Computational bioengineering [[electronic resource] ] : current trends and applications / / editors, M. Cerrolaza ... [et al.] |
Pubbl/distr/stampa | London, : Imperial College Press, c2004 |
Descrizione fisica | 1 online resource (254 p.) |
Disciplina | 610.28 |
Altri autori (Persone) | CerrolazaM |
Soggetto topico |
Bioengineering - Computer simulation
Computational biology |
ISBN |
1-281-86646-6
9786611866464 1-86094-540-6 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Computational Bioengineering: Current Trends and Applications; Preface; CONTENTS; The Living Human Project: The Grand Challenge of European Biomechanics? Marco Viceconti, Fulvia Taddei, Alessandro Chiarini, Alberto Leardini and Debora Testi; Use of Explicit FE in the Pre-clinical Testing of Total Knee Replacement Mark Taylor, Rachel Tan, Jason Halloran and Paul Rullkoetter; The Plumbing of Long Bones S. C. Cowin; An Analysis of the Performance of Meshless Methods in Biomechanics M. Doblare, E. Cueto, B. Calvo, M. A . Martinez, J . M. Garcia and E. Pena
Assessment of Plaque Stability Based on High-Resolution Magnetic Resonance Imaging of Human Atherosclerotic Lesions and Computational Mechanical Analysis Christian A . J. Schulze-Bauer, Michael StadleComputational Mechanobiology P. J. Prendergast; Optimization Models in the Simulation of the Bone Adaptation Process H. Rodrigues and P. R. Fernandes; Analysis of Blood Flow in Arteries by Means of Hagen - Poiseuille's Model J . Wojnarowski Thermomechanics of Bone-Implant Interfaces after Cemented Joint Arthroplasty: Theoretical Models and Computational Aspects L. R. Rakotomanana and N. A. RamanirakaAnalysis of Transient Blood Flow Passing through Mechanical Heart Valves by Lattice Boltzmann Methods O. Pelliccioni, M. Cerrolaza and M. Herrera |
Record Nr. | UNINA-9910783483003321 |
London, : Imperial College Press, c2004 | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational bioengineering [[electronic resource] ] : current trends and applications / / editors, M. Cerrolaza ... [et al.] |
Edizione | [1st ed.] |
Pubbl/distr/stampa | London, : Imperial College Press, c2004 |
Descrizione fisica | 1 online resource (254 p.) |
Disciplina | 610.28 |
Altri autori (Persone) | CerrolazaM |
Soggetto topico |
Bioengineering - Computer simulation
Computational biology |
ISBN |
1-281-86646-6
9786611866464 1-86094-540-6 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Computational Bioengineering: Current Trends and Applications; Preface; CONTENTS; The Living Human Project: The Grand Challenge of European Biomechanics? Marco Viceconti, Fulvia Taddei, Alessandro Chiarini, Alberto Leardini and Debora Testi; Use of Explicit FE in the Pre-clinical Testing of Total Knee Replacement Mark Taylor, Rachel Tan, Jason Halloran and Paul Rullkoetter; The Plumbing of Long Bones S. C. Cowin; An Analysis of the Performance of Meshless Methods in Biomechanics M. Doblare, E. Cueto, B. Calvo, M. A . Martinez, J . M. Garcia and E. Pena
Assessment of Plaque Stability Based on High-Resolution Magnetic Resonance Imaging of Human Atherosclerotic Lesions and Computational Mechanical Analysis Christian A . J. Schulze-Bauer, Michael StadleComputational Mechanobiology P. J. Prendergast; Optimization Models in the Simulation of the Bone Adaptation Process H. Rodrigues and P. R. Fernandes; Analysis of Blood Flow in Arteries by Means of Hagen - Poiseuille's Model J . Wojnarowski Thermomechanics of Bone-Implant Interfaces after Cemented Joint Arthroplasty: Theoretical Models and Computational Aspects L. R. Rakotomanana and N. A. RamanirakaAnalysis of Transient Blood Flow Passing through Mechanical Heart Valves by Lattice Boltzmann Methods O. Pelliccioni, M. Cerrolaza and M. Herrera |
Record Nr. | UNINA-9910824226203321 |
London, : Imperial College Press, c2004 | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational intelligence and its applications [[electronic resource] ] : evolutionary computation, fuzzy logic, neural network and support vector machine techniques / / H.K. Lam, Steve S.H. Ling, Hung T. Nguyen, editors |
Pubbl/distr/stampa | London, : Imperial College Press, c2012 |
Descrizione fisica | 1 online resource (318 p.) |
Disciplina | 006.3 |
Altri autori (Persone) |
LamH. K
NguyenHung T LingSteve S. H |
Soggetto topico |
Computational intelligence
Artificial intelligence |
Soggetto genere / forma | Electronic books. |
ISBN |
1-283-59351-3
9786613905963 1-84816-692-3 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Preface; Contents; Evolutionary Computation and its Applications; 1. Maximal Margin Algorithms for Pose Estimation Ying Guo and Jiaming Li; Contents; 1.1. Introduction; 1.2. Pose Detection Algorithm; 1.2.1. Procedure of pose detection; 1.2.2. Eigen Pose Space; 1.3. Maximal Margin Algorithms for Classification; 1.3.1. Support vector machines; 1.3.2. Boosting; 1.3.3. Soft margin AdaBoost; 1.3.4. Margin distribution; 1.4. Experiments and Discussions; 1.4.1. Data preparation; 1.4.2. Data preprocessing; 1.4.3. Experiment results of Group A; 1.4.4. Margin distribution graphs
1.4.5. Experiment results of Group B1.5. Conclusion; References; 2. Polynomial Modeling in a Dynamic Environment based on a Particle Swarm Optimization Kit Yan Chan and Tharam S. Dillon; Contents; 2.1. Introduction; 2.2. PSO for Polynomial Modeling; 2.3. PSO vs. GP; References; 3. Restoration of Half-toned Color-quantized Images Using Particle Swarm Optimization with Multi-wavelet Mutation Frank H.F. Leung, Benny C.W. Yeung and Y.H. Chan; Contents; 3.1. Introduction; 3.2. Color Quantization With Half-toning; 3.3. Formulation of Restoration Algorithm 3.3.1. PSO with multi-wavelet mutation (MWPSO)3.3.2. The tness function; 3.3.3. Restoration with MWPSO; 3.3.4. Experimental setup; 3.4. Result and Analysis; 3.5. Conclusion; References; Fuzzy Logics and their Applications; 4. Hypoglycemia Detection for Insulin-dependent Diabetes Mellitus: Evolved Fuzzy Inference System Approach S.H. Ling, P.P. San and H.T. Nguyen; Contents; 4.1. Introduction; 4.2. Hypoglycemia Detection System: Evolved Fuzzy Inference System Approach; 4.2.1. Fuzzy inference system; 4.2.1.1. Fuzzification; 4.2.1.2. Fuzzy reasoning; 4.2.1.3. Defuzzification 4.2.2. Particle swarm optimization with wavelet mutation4.2.2.1. Wavelet mutation; 4.2.3. Choosing the HPSOWM parameters; 4.2.4. Fitness function and training; 4.3. Results and Discussion; 4.4. Conclusion; References; Neural Networks and their Applications; 5. Study of Limit Cycle Behavior of Weights of Perceptron C.Y.F. Ho and B.W.K. Ling; Contents; 5.1. Introduction; 5.2. Notations; 5.3. Global Boundness Property; 5.4. Limit Cycle Behavior; 5.5. Application of Perceptron Exhibiting Limit Cycle Behavior; 5.6. Conclusion; References 6. Artificial Neural Network Modeling with Application to Nonlinear Dynamics Yi ZhaoContents; 6.1. Introduction; 6.2. Model Structure; 6.3. Avoid Overfitting by Model Selection; 6.3.1. How it works; 6.3.2. Case study; A. Computational experiments; B. Experimental data; 6.4. Surrogate Data Method for Model Residual; 6.4.1. Linear surrogate data; 6.4.2. Systematic flowchart; 6.4.3. Identification of model residual; 6.4.4. Further investigation; 6.5. The Diploid Model Based on Neural Networks; 6.6. Conclusion; Acknowledgments; References 7. Solving Eigen-problems of Matrices by Neural Networks Yiguang Liu, Zhisheng You, Bingbing Liu and Jiliu Zhou |
Record Nr. | UNINA-9910464980803321 |
London, : Imperial College Press, c2012 | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational intelligence and its applications [[electronic resource] ] : evolutionary computation, fuzzy logic, neural network and support vector machine techniques / / H.K. Lam, Steve S.H. Ling, Hung T. Nguyen, editors |
Pubbl/distr/stampa | London, : Imperial College Press, c2012 |
Descrizione fisica | 1 online resource (318 p.) |
Disciplina | 006.3 |
Altri autori (Persone) |
LamH. K
NguyenHung T LingSteve S. H |
Soggetto topico |
Computational intelligence
Artificial intelligence |
ISBN |
1-283-59351-3
9786613905963 1-84816-692-3 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Preface; Contents; Evolutionary Computation and its Applications; 1. Maximal Margin Algorithms for Pose Estimation Ying Guo and Jiaming Li; Contents; 1.1. Introduction; 1.2. Pose Detection Algorithm; 1.2.1. Procedure of pose detection; 1.2.2. Eigen Pose Space; 1.3. Maximal Margin Algorithms for Classification; 1.3.1. Support vector machines; 1.3.2. Boosting; 1.3.3. Soft margin AdaBoost; 1.3.4. Margin distribution; 1.4. Experiments and Discussions; 1.4.1. Data preparation; 1.4.2. Data preprocessing; 1.4.3. Experiment results of Group A; 1.4.4. Margin distribution graphs
1.4.5. Experiment results of Group B1.5. Conclusion; References; 2. Polynomial Modeling in a Dynamic Environment based on a Particle Swarm Optimization Kit Yan Chan and Tharam S. Dillon; Contents; 2.1. Introduction; 2.2. PSO for Polynomial Modeling; 2.3. PSO vs. GP; References; 3. Restoration of Half-toned Color-quantized Images Using Particle Swarm Optimization with Multi-wavelet Mutation Frank H.F. Leung, Benny C.W. Yeung and Y.H. Chan; Contents; 3.1. Introduction; 3.2. Color Quantization With Half-toning; 3.3. Formulation of Restoration Algorithm 3.3.1. PSO with multi-wavelet mutation (MWPSO)3.3.2. The tness function; 3.3.3. Restoration with MWPSO; 3.3.4. Experimental setup; 3.4. Result and Analysis; 3.5. Conclusion; References; Fuzzy Logics and their Applications; 4. Hypoglycemia Detection for Insulin-dependent Diabetes Mellitus: Evolved Fuzzy Inference System Approach S.H. Ling, P.P. San and H.T. Nguyen; Contents; 4.1. Introduction; 4.2. Hypoglycemia Detection System: Evolved Fuzzy Inference System Approach; 4.2.1. Fuzzy inference system; 4.2.1.1. Fuzzification; 4.2.1.2. Fuzzy reasoning; 4.2.1.3. Defuzzification 4.2.2. Particle swarm optimization with wavelet mutation4.2.2.1. Wavelet mutation; 4.2.3. Choosing the HPSOWM parameters; 4.2.4. Fitness function and training; 4.3. Results and Discussion; 4.4. Conclusion; References; Neural Networks and their Applications; 5. Study of Limit Cycle Behavior of Weights of Perceptron C.Y.F. Ho and B.W.K. Ling; Contents; 5.1. Introduction; 5.2. Notations; 5.3. Global Boundness Property; 5.4. Limit Cycle Behavior; 5.5. Application of Perceptron Exhibiting Limit Cycle Behavior; 5.6. Conclusion; References 6. Artificial Neural Network Modeling with Application to Nonlinear Dynamics Yi ZhaoContents; 6.1. Introduction; 6.2. Model Structure; 6.3. Avoid Overfitting by Model Selection; 6.3.1. How it works; 6.3.2. Case study; A. Computational experiments; B. Experimental data; 6.4. Surrogate Data Method for Model Residual; 6.4.1. Linear surrogate data; 6.4.2. Systematic flowchart; 6.4.3. Identification of model residual; 6.4.4. Further investigation; 6.5. The Diploid Model Based on Neural Networks; 6.6. Conclusion; Acknowledgments; References 7. Solving Eigen-problems of Matrices by Neural Networks Yiguang Liu, Zhisheng You, Bingbing Liu and Jiliu Zhou |
Record Nr. | UNINA-9910792092403321 |
London, : Imperial College Press, c2012 | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational intelligence and its applications [[electronic resource] ] : evolutionary computation, fuzzy logic, neural network and support vector machine techniques / / H.K. Lam, Steve S.H. Ling, Hung T. Nguyen, editors |
Pubbl/distr/stampa | London, : Imperial College Press, c2012 |
Descrizione fisica | 1 online resource (318 p.) |
Disciplina | 006.3 |
Altri autori (Persone) |
LamH. K
NguyenHung T LingSteve S. H |
Soggetto topico |
Computational intelligence
Artificial intelligence |
ISBN |
1-283-59351-3
9786613905963 1-84816-692-3 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Preface; Contents; Evolutionary Computation and its Applications; 1. Maximal Margin Algorithms for Pose Estimation Ying Guo and Jiaming Li; Contents; 1.1. Introduction; 1.2. Pose Detection Algorithm; 1.2.1. Procedure of pose detection; 1.2.2. Eigen Pose Space; 1.3. Maximal Margin Algorithms for Classification; 1.3.1. Support vector machines; 1.3.2. Boosting; 1.3.3. Soft margin AdaBoost; 1.3.4. Margin distribution; 1.4. Experiments and Discussions; 1.4.1. Data preparation; 1.4.2. Data preprocessing; 1.4.3. Experiment results of Group A; 1.4.4. Margin distribution graphs
1.4.5. Experiment results of Group B1.5. Conclusion; References; 2. Polynomial Modeling in a Dynamic Environment based on a Particle Swarm Optimization Kit Yan Chan and Tharam S. Dillon; Contents; 2.1. Introduction; 2.2. PSO for Polynomial Modeling; 2.3. PSO vs. GP; References; 3. Restoration of Half-toned Color-quantized Images Using Particle Swarm Optimization with Multi-wavelet Mutation Frank H.F. Leung, Benny C.W. Yeung and Y.H. Chan; Contents; 3.1. Introduction; 3.2. Color Quantization With Half-toning; 3.3. Formulation of Restoration Algorithm 3.3.1. PSO with multi-wavelet mutation (MWPSO)3.3.2. The tness function; 3.3.3. Restoration with MWPSO; 3.3.4. Experimental setup; 3.4. Result and Analysis; 3.5. Conclusion; References; Fuzzy Logics and their Applications; 4. Hypoglycemia Detection for Insulin-dependent Diabetes Mellitus: Evolved Fuzzy Inference System Approach S.H. Ling, P.P. San and H.T. Nguyen; Contents; 4.1. Introduction; 4.2. Hypoglycemia Detection System: Evolved Fuzzy Inference System Approach; 4.2.1. Fuzzy inference system; 4.2.1.1. Fuzzification; 4.2.1.2. Fuzzy reasoning; 4.2.1.3. Defuzzification 4.2.2. Particle swarm optimization with wavelet mutation4.2.2.1. Wavelet mutation; 4.2.3. Choosing the HPSOWM parameters; 4.2.4. Fitness function and training; 4.3. Results and Discussion; 4.4. Conclusion; References; Neural Networks and their Applications; 5. Study of Limit Cycle Behavior of Weights of Perceptron C.Y.F. Ho and B.W.K. Ling; Contents; 5.1. Introduction; 5.2. Notations; 5.3. Global Boundness Property; 5.4. Limit Cycle Behavior; 5.5. Application of Perceptron Exhibiting Limit Cycle Behavior; 5.6. Conclusion; References 6. Artificial Neural Network Modeling with Application to Nonlinear Dynamics Yi ZhaoContents; 6.1. Introduction; 6.2. Model Structure; 6.3. Avoid Overfitting by Model Selection; 6.3.1. How it works; 6.3.2. Case study; A. Computational experiments; B. Experimental data; 6.4. Surrogate Data Method for Model Residual; 6.4.1. Linear surrogate data; 6.4.2. Systematic flowchart; 6.4.3. Identification of model residual; 6.4.4. Further investigation; 6.5. The Diploid Model Based on Neural Networks; 6.6. Conclusion; Acknowledgments; References 7. Solving Eigen-problems of Matrices by Neural Networks Yiguang Liu, Zhisheng You, Bingbing Liu and Jiliu Zhou |
Record Nr. | UNINA-9910807056503321 |
London, : Imperial College Press, c2012 | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational rheology / R.G. Owens, T.N. Phillips |
Autore | Owens, Robert G. |
Pubbl/distr/stampa | London : Imperial College Press, c2002 |
Descrizione fisica | XVII, 417 p. : ill. ; 27 cm |
Altri autori (Persone) | Phillips, Timothy N. |
Soggetto non controllato | Reologia computazionale |
ISBN | 1-86094-186-9 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Record Nr. | UNINA-990008503540403321 |
Owens, Robert G. | ||
London : Imperial College Press, c2002 | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational rheology / R. G. Owens, T. N. Phillips |
Autore | Owens, Robert G. |
Pubbl/distr/stampa | London : Imperial College Press, c2002 |
Descrizione fisica | xv, 417 p. : ill. (some col.), ports. ; 27 cm |
Altri autori (Persone) | Phillips, Timothy N. |
Soggetto topico |
Non-Newtonian fluids - Mathematical models
Viscoelasticity - Mathematical models |
ISBN | 1860941869 |
Classificazione | LC QC189.5.A1O94 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Record Nr. | UNISALENTO-991004075839707536 |
Owens, Robert G. | ||
London : Imperial College Press, c2002 | ||
Materiale a stampa | ||
Lo trovi qui: Univ. del Salento | ||
|
Computational systems bioinformatics [[electronic resource] ] : CSB2007 Conference proceedings, volume 6, University of California, San Diego, 13-17 August 2007 / / editors, Peter Markstein, Ying Xu |
Pubbl/distr/stampa | London, : Imperial College Press |
Descrizione fisica | 1 online resource (472 p.) |
Disciplina | 572.80285 |
Altri autori (Persone) |
MarksteinPeter
XuYing <1960-> |
Collana |
Series on Advances in Bioinformatics and Computational Biology
Series on advances in bioinformatics and computational biology |
Soggetto topico |
Bioinformatics
Biological systems - Computer simulation Biological systems - Simulation methods Computational biology |
Soggetto genere / forma | Electronic books. |
ISBN |
1-281-86759-4
9786611867591 1-86094-873-1 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
CONTENTS; Preface; Committees; Referees; Keynote Address; Quantitative Aspects of Gene Regulation in Bacteria: Amplification. Threshold, and Combinatorial Control Terry Hwa; Whole-Genome Analysis of Dorsal Gradient Thresholds in the Drosophila Embryo Julia ZeitlingeK Rob Zinzen, Dmitri Papatsenko et al.; Invited Talks; Learning Predictive Models of Gene Regulation Christina Leslie; The Phylofacts Phylogenomic Encyclopedias: Structural Phylogenomic Analysis Across the Tree of Life Kimmen Golander; Mapping and Analysis of the Human Interactome Network Kavitha Venkatesan; 1. INTRODUCTION
Gene-Centered Protein-DNA lnteractome Mapping A.J. Marian WalhoutProteomics; Algorithm for Peptide Sequencing by Tandem Mass Spectrometry Based on Better Preprocessing and Anti-S ymmetric Computational Model Kang Ning and Hon Wai Leong; 1. INTRODUCTION; Preprocessing to remove noisy peaks; The anti-symmetric problem; 2. ANALYSIS OF PROBLEMS AND CURRENT ALGORITHMS; 2.1. General Terminologies; 2.2. Datasets; 2.3. Problems Analysis; 3. NEW COMPUTATIONAL MODELS AND ALGORITHM; 3.1. Preprocessing to remove noisy peaks and introduce pseudo peaks; 3.2. The Anti-symmetric Problem 3.3. Novel Peptide Sequencing Algorithm4. EXPERIMENTS; 4.1. Experiment Settings; 4.2. Results; 5. CONCLUSIONS; References; Algorithms for Selecting Breakpoint Locations to Optimize Diversity in Protein Engineering by Site-Directed Protein Recombination Wei Zheng, Xiaoduan Ye, Alan A4 Friedman and Chris Bailey-Kellogg; 1. INTRODUCTION; 2. METHODS; 2.1. Library Diversity; 2.2. Metrics for Breakpoint Selection; 2.3. Dynamic Programming for Breakpoint Selection; 3. RESULTS A N D DISCUSSION; 4. CONCLUSION; ACKNOWLEDGMENTS; References An Algorithmic Approach to Automated High-Throughput Identification of Disulfide Connectivity in Proteins Using Tandem Mass Spectrometry Timothy Lee, Rahul Singh, Ten-Yang Yen and Bruce Macher1. INTRODUCTION; 1.1. Comparison of the Proposed Approach with Related Works; 2. THE PROPOSED METHOD; 2.1. Problem Formulation; 2.2. Algorithmic Framework; 2.2.1. Finding the MS spectrum match; 2.2.2. Finding the MS/MS spectrum match; 2.2.3. Finding a perfect matching of maximum weight for a fully connected graph; 2.2.4. Consideration of missed proteolytic cleavages and intra-molecular bonded cysteines 2.2.5. Peak finding in the presence of noise2.2.6. Addressing isotopic variation and neutral loss; 2.2.7. Interpretation of peaks given charge state uncertainty; 2.2.8. Overall complexity; 3. EXPERIMENTAL RESULTS; 3.1. Description of the Data and Experimental Procedures; 3.2. Summary of Results; 3.2.1. Analysis of the effect of varying threshold t on results; 3.2.2. Comparison with MS2Assign program; 4. CONCLUSIONS AND DISCUSSION; Acknowledgments; References; Biomedical Application; Cancer Molecular Pattern Discovery by Subspace Consensus Kernel Classification Xiaoxu Hun; 1. INTRODUCTION 1 .1. Nonnegative matrix factorization |
Record Nr. | UNINA-9910451116403321 |
London, : Imperial College Press | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational systems bioinformatics [[electronic resource] ] : CSB2007 Conference proceedings, volume 6, University of California, San Diego, 13-17 August 2007 / / editors, Peter Markstein, Ying Xu |
Pubbl/distr/stampa | London, : Imperial College Press |
Descrizione fisica | 1 online resource (472 p.) |
Disciplina | 572.80285 |
Altri autori (Persone) |
MarksteinPeter
XuYing <1960-> |
Collana |
Series on Advances in Bioinformatics and Computational Biology
Series on advances in bioinformatics and computational biology |
Soggetto topico |
Bioinformatics
Biological systems - Computer simulation Biological systems - Simulation methods Computational biology |
ISBN |
1-281-86759-4
9786611867591 1-86094-873-1 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
CONTENTS; Preface; Committees; Referees; Keynote Address; Quantitative Aspects of Gene Regulation in Bacteria: Amplification. Threshold, and Combinatorial Control Terry Hwa; Whole-Genome Analysis of Dorsal Gradient Thresholds in the Drosophila Embryo Julia ZeitlingeK Rob Zinzen, Dmitri Papatsenko et al.; Invited Talks; Learning Predictive Models of Gene Regulation Christina Leslie; The Phylofacts Phylogenomic Encyclopedias: Structural Phylogenomic Analysis Across the Tree of Life Kimmen Golander; Mapping and Analysis of the Human Interactome Network Kavitha Venkatesan; 1. INTRODUCTION
Gene-Centered Protein-DNA lnteractome Mapping A.J. Marian WalhoutProteomics; Algorithm for Peptide Sequencing by Tandem Mass Spectrometry Based on Better Preprocessing and Anti-S ymmetric Computational Model Kang Ning and Hon Wai Leong; 1. INTRODUCTION; Preprocessing to remove noisy peaks; The anti-symmetric problem; 2. ANALYSIS OF PROBLEMS AND CURRENT ALGORITHMS; 2.1. General Terminologies; 2.2. Datasets; 2.3. Problems Analysis; 3. NEW COMPUTATIONAL MODELS AND ALGORITHM; 3.1. Preprocessing to remove noisy peaks and introduce pseudo peaks; 3.2. The Anti-symmetric Problem 3.3. Novel Peptide Sequencing Algorithm4. EXPERIMENTS; 4.1. Experiment Settings; 4.2. Results; 5. CONCLUSIONS; References; Algorithms for Selecting Breakpoint Locations to Optimize Diversity in Protein Engineering by Site-Directed Protein Recombination Wei Zheng, Xiaoduan Ye, Alan A4 Friedman and Chris Bailey-Kellogg; 1. INTRODUCTION; 2. METHODS; 2.1. Library Diversity; 2.2. Metrics for Breakpoint Selection; 2.3. Dynamic Programming for Breakpoint Selection; 3. RESULTS A N D DISCUSSION; 4. CONCLUSION; ACKNOWLEDGMENTS; References An Algorithmic Approach to Automated High-Throughput Identification of Disulfide Connectivity in Proteins Using Tandem Mass Spectrometry Timothy Lee, Rahul Singh, Ten-Yang Yen and Bruce Macher1. INTRODUCTION; 1.1. Comparison of the Proposed Approach with Related Works; 2. THE PROPOSED METHOD; 2.1. Problem Formulation; 2.2. Algorithmic Framework; 2.2.1. Finding the MS spectrum match; 2.2.2. Finding the MS/MS spectrum match; 2.2.3. Finding a perfect matching of maximum weight for a fully connected graph; 2.2.4. Consideration of missed proteolytic cleavages and intra-molecular bonded cysteines 2.2.5. Peak finding in the presence of noise2.2.6. Addressing isotopic variation and neutral loss; 2.2.7. Interpretation of peaks given charge state uncertainty; 2.2.8. Overall complexity; 3. EXPERIMENTAL RESULTS; 3.1. Description of the Data and Experimental Procedures; 3.2. Summary of Results; 3.2.1. Analysis of the effect of varying threshold t on results; 3.2.2. Comparison with MS2Assign program; 4. CONCLUSIONS AND DISCUSSION; Acknowledgments; References; Biomedical Application; Cancer Molecular Pattern Discovery by Subspace Consensus Kernel Classification Xiaoxu Hun; 1. INTRODUCTION 1 .1. Nonnegative matrix factorization |
Record Nr. | UNINA-9910784980403321 |
London, : Imperial College Press | ||
Materiale a stampa | ||
Lo trovi qui: Univ. Federico II | ||
|
Computational systems bioinformatics [[electronic resource] ] : CSB2007 Conference proceedings, volume 6, University of California, San Diego, 13-17 August 2007 / / editors, Peter Markstein, Ying Xu |
Pubbl/distr/stampa | London, : Imperial College Press |
Descrizione fisica | 1 online resource (472 p.) |
Disciplina | 572.80285 |
Altri autori (Persone) |
MarksteinPeter
XuYing <1960-> |
Collana |
Series on Advances in Bioinformatics and Computational Biology
Series on advances in bioinformatics and computational biology |
Soggetto topico |
Bioinformatics
Biological systems - Computer simulation Biological systems - Simulation methods Computational biology |
ISBN |
1-281-86759-4
9786611867591 1-86094-873-1 |
Formato | Materiale a stampa |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
CONTENTS; Preface; Committees; Referees; Keynote Address; Quantitative Aspects of Gene Regulation in Bacteria: Amplification. Threshold, and Combinatorial Control Terry Hwa; Whole-Genome Analysis of Dorsal Gradient Thresholds in the Drosophila Embryo Julia ZeitlingeK Rob Zinzen, Dmitri Papatsenko et al.; Invited Talks; Learning Predictive Models of Gene Regulation Christina Leslie; The Phylofacts Phylogenomic Encyclopedias: Structural Phylogenomic Analysis Across the Tree of Life Kimmen Golander; Mapping and Analysis of the Human Interactome Network Kavitha Venkatesan; 1. INTRODUCTION
Gene-Centered Protein-DNA lnteractome Mapping A.J. Marian WalhoutProteomics; Algorithm for Peptide Sequencing by Tandem Mass Spectrometry Based on Better Preprocessing and Anti-S ymmetric Computational Model Kang Ning and Hon Wai Leong; 1. INTRODUCTION; Preprocessing to remove noisy peaks; The anti-symmetric problem; 2. ANALYSIS OF PROBLEMS AND CURRENT ALGORITHMS; 2.1. General Terminologies; 2.2. Datasets; 2.3. Problems Analysis; 3. NEW COMPUTATIONAL MODELS AND ALGORITHM; 3.1. Preprocessing to remove noisy peaks and introduce pseudo peaks; 3.2. The Anti-symmetric Problem 3.3. Novel Peptide Sequencing Algorithm4. EXPERIMENTS; 4.1. Experiment Settings; 4.2. Results; 5. CONCLUSIONS; References; Algorithms for Selecting Breakpoint Locations to Optimize Diversity in Protein Engineering by Site-Directed Protein Recombination Wei Zheng, Xiaoduan Ye, Alan A4 Friedman and Chris Bailey-Kellogg; 1. INTRODUCTION; 2. METHODS; 2.1. Library Diversity; 2.2. Metrics for Breakpoint Selection; 2.3. Dynamic Programming for Breakpoint Selection; 3. RESULTS A N D DISCUSSION; 4. CONCLUSION; ACKNOWLEDGMENTS; References An Algorithmic Approach to Automated High-Throughput Identification of Disulfide Connectivity in Proteins Using Tandem Mass Spectrometry Timothy Lee, Rahul Singh, Ten-Yang Yen and Bruce Macher1. INTRODUCTION; 1.1. Comparison of the Proposed Approach with Related Works; 2. THE PROPOSED METHOD; 2.1. Problem Formulation; 2.2. Algorithmic Framework; 2.2.1. Finding the MS spectrum match; 2.2.2. Finding the MS/MS spectrum match; 2.2.3. Finding a perfect matching of maximum weight for a fully connected graph; 2.2.4. Consideration of missed proteolytic cleavages and intra-molecular bonded cysteines 2.2.5. Peak finding in the presence of noise2.2.6. Addressing isotopic variation and neutral loss; 2.2.7. Interpretation of peaks given charge state uncertainty; 2.2.8. Overall complexity; 3. EXPERIMENTAL RESULTS; 3.1. Description of the Data and Experimental Procedures; 3.2. Summary of Results; 3.2.1. Analysis of the effect of varying threshold t on results; 3.2.2. Comparison with MS2Assign program; 4. CONCLUSIONS AND DISCUSSION; Acknowledgments; References; Biomedical Application; Cancer Molecular Pattern Discovery by Subspace Consensus Kernel Classification Xiaoxu Hun; 1. INTRODUCTION 1 .1. Nonnegative matrix factorization |
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London, : Imperial College Press | ||
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