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Algorithms in Bioinformatics [[electronic resource] ] : 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings / / edited by Rita Casadio, Gene Myers
| Algorithms in Bioinformatics [[electronic resource] ] : 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings / / edited by Rita Casadio, Gene Myers |
| Edizione | [1st ed. 2005.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2005 |
| Descrizione fisica | 1 online resource (X, 436 p.) |
| Disciplina | 572.0285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computer programming Algorithms Data structures (Computer science) Computers Computer science—Mathematics Life Sciences, general Programming Techniques Algorithm Analysis and Problem Complexity Data Structures Computation by Abstract Devices Discrete Mathematics in Computer Science |
| Soggetto non controllato | WABI |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Expression -- Spectral Clustering Gene Ontology Terms to Group Genes by Function -- Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: A Search Pruned by Expression -- Clustering Gene Expression Series with Prior Knowledge -- A Linear Time Biclustering Algorithm for Time Series Gene Expression Data -- Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds -- Phylogeny -- A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem -- Computing the Quartet Distance Between Trees of Arbitrary Degree -- Using Semi-definite Programming to Enhance Supertree Resolvability -- An Efficient Reduction from Constrained to Unconstrained Maximum Agreement Subtree -- Pattern Identification in Biogeography -- On the Complexity of Several Haplotyping Problems -- A Hidden Markov Technique for Haplotype Reconstruction -- Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event -- Networks -- A Faster Algorithm for Detecting Network Motifs -- Reaction Motifs in Metabolic Networks -- Reconstructing Metabolic Networks Using Interval Analysis -- Genome Rearrangements -- A 1.375-Approximation Algorithm for Sorting by Transpositions -- A New Tight Upper Bound on the Transposition Distance -- Perfect Sorting by Reversals Is Not Always Difficult -- Minimum Recombination Histories by Branch and Bound -- Sequences -- A Unifying Framework for Seed Sensitivity and Its Application to Subset Seeds -- Generalized Planted (l,d)-Motif Problem with Negative Set -- Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI) -- The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity -- Multiple Structural RNA Alignment with Lagrangian Relaxation -- Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons -- Ortholog Clustering on a Multipartite Graph -- Linear Time Algorithm for Parsing RNA Secondary Structure -- A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance -- Structure -- Optimal Protein Threading by Cost-Splitting -- Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment -- Rotamer-Pair Energy Calculations Using a Trie Data Structure -- Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity -- The Main Structural Regularities of the Sandwich Proteins -- Discovery of Protein Substructures in EM Maps. |
| Record Nr. | UNINA-9910482997403321 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2005 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Algorithms in Bioinformatics [[electronic resource] ] : 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings / / edited by Rita Casadio, Gene Myers
| Algorithms in Bioinformatics [[electronic resource] ] : 5th International Workshop, WABI 2005, Mallorca, Spain, October 3-6, 2005, Proceedings / / edited by Rita Casadio, Gene Myers |
| Edizione | [1st ed. 2005.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2005 |
| Descrizione fisica | 1 online resource (X, 436 p.) |
| Disciplina | 572.0285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computer programming Algorithms Data structures (Computer science) Computers Computer science—Mathematics Life Sciences, general Programming Techniques Algorithm Analysis and Problem Complexity Data Structures Computation by Abstract Devices Discrete Mathematics in Computer Science |
| Soggetto non controllato | WABI |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Expression -- Spectral Clustering Gene Ontology Terms to Group Genes by Function -- Dynamic De-Novo Prediction of microRNAs Associated with Cell Conditions: A Search Pruned by Expression -- Clustering Gene Expression Series with Prior Knowledge -- A Linear Time Biclustering Algorithm for Time Series Gene Expression Data -- Time-Window Analysis of Developmental Gene Expression Data with Multiple Genetic Backgrounds -- Phylogeny -- A Lookahead Branch-and-Bound Algorithm for the Maximum Quartet Consistency Problem -- Computing the Quartet Distance Between Trees of Arbitrary Degree -- Using Semi-definite Programming to Enhance Supertree Resolvability -- An Efficient Reduction from Constrained to Unconstrained Maximum Agreement Subtree -- Pattern Identification in Biogeography -- On the Complexity of Several Haplotyping Problems -- A Hidden Markov Technique for Haplotype Reconstruction -- Algorithms for Imperfect Phylogeny Haplotyping (IPPH) with a Single Homoplasy or Recombination Event -- Networks -- A Faster Algorithm for Detecting Network Motifs -- Reaction Motifs in Metabolic Networks -- Reconstructing Metabolic Networks Using Interval Analysis -- Genome Rearrangements -- A 1.375-Approximation Algorithm for Sorting by Transpositions -- A New Tight Upper Bound on the Transposition Distance -- Perfect Sorting by Reversals Is Not Always Difficult -- Minimum Recombination Histories by Branch and Bound -- Sequences -- A Unifying Framework for Seed Sensitivity and Its Application to Subset Seeds -- Generalized Planted (l,d)-Motif Problem with Negative Set -- Alignment of Tandem Repeats with Excision, Duplication, Substitution and Indels (EDSI) -- The Peres-Shields Order Estimator for Fixed and Variable Length Markov Models with Applications to DNA Sequence Similarity -- Multiple Structural RNA Alignment with Lagrangian Relaxation -- Faster Algorithms for Optimal Multiple Sequence Alignment Based on Pairwise Comparisons -- Ortholog Clustering on a Multipartite Graph -- Linear Time Algorithm for Parsing RNA Secondary Structure -- A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance -- Structure -- Optimal Protein Threading by Cost-Splitting -- Efficient Parameterized Algorithm for Biopolymer Structure-Sequence Alignment -- Rotamer-Pair Energy Calculations Using a Trie Data Structure -- Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity -- The Main Structural Regularities of the Sandwich Proteins -- Discovery of Protein Substructures in EM Maps. |
| Record Nr. | UNISA-996465841003316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2005 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Algorithms in Bioinformatics [[electronic resource] ] : 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings / / edited by Inge Jonassen, Junhyong Kim
| Algorithms in Bioinformatics [[electronic resource] ] : 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings / / edited by Inge Jonassen, Junhyong Kim |
| Edizione | [1st ed. 2004.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2004 |
| Descrizione fisica | 1 online resource (IX, 477 p.) |
| Disciplina | 572.0285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Biochemistry
Computer programming Algorithms Computers Data structures (Computer science) Computer science—Mathematics Biochemistry, general Programming Techniques Algorithm Analysis and Problem Complexity Computation by Abstract Devices Data Structures Discrete Mathematics in Computer Science |
| Soggetto non controllato |
WABI
Algorithms Bioinformatics |
| ISBN | 3-540-30219-0 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Papers -- Reversing Gene Erosion – Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data -- Reconstructing Ancestral Gene Orders Using Conserved Intervals -- Sorting by Reversals with Common Intervals -- A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns -- A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals -- Algorithms for Finding Maximal-Scoring Segment Sets -- Gapped Local Similarity Search with Provable Guarantees -- Monotone Scoring of Patterns with Mismatches -- Suboptimal Local Alignments Across Multiple Scoring Schemes -- A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic -- Adding Hidden Nodes to Gene Networks -- Joint Analysis of DNA Copy Numbers and Gene Expression Levels -- Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting -- Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation -- Multiple Vector Seeds for Protein Alignment -- Solving the Protein Threading Problem by Lagrangian Relaxation -- Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations -- ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences -- Local Search Heuristic for Rigid Protein Docking -- Sequence Database Compression for Peptide Identification from Tandem Mass Spectra -- Linear Reduction for Haplotype Inference -- A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis -- Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype Reconstruction -- Approximation Algorithms for the Selection of Robust Tag SNPs -- The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach -- A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment -- New Algorithms for Multiple DNA Sequence Alignment -- Chaining Algorithms for Alignment of Draft Sequence -- Translation Initiation Sites Prediction with Mixture Gaussian Models -- Online Consensus and Agreement of Phylogenetic Trees -- Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-Specificity -- Topological Rearrangements and Local Search Method for Tandem Duplication Trees -- Phylogenetic Super-networks from Partial Trees -- Genome Identification and Classification by Short Oligo Arrays -- Novel Tree Edit Operations for RNA Secondary Structure Comparison -- The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics -- Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding -- Finding Optimal Pairs of Patterns -- Finding Missing Patterns. |
| Record Nr. | UNISA-996465434003316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2004 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Algorithms in Bioinformatics [[electronic resource] ] : 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings / / edited by Inge Jonassen, Junhyong Kim
| Algorithms in Bioinformatics [[electronic resource] ] : 4th International Workshop, WABI 2004, Bergen, Norway, September 17-21, 2004, Proceedings / / edited by Inge Jonassen, Junhyong Kim |
| Edizione | [1st ed. 2004.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2004 |
| Descrizione fisica | 1 online resource (IX, 477 p.) |
| Disciplina | 572.0285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Biochemistry
Computer programming Algorithms Computers Data structures (Computer science) Computer science—Mathematics Biochemistry, general Programming Techniques Algorithm Analysis and Problem Complexity Computation by Abstract Devices Data Structures Discrete Mathematics in Computer Science |
| Soggetto non controllato |
WABI
Algorithms Bioinformatics |
| ISBN | 3-540-30219-0 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Papers -- Reversing Gene Erosion – Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data -- Reconstructing Ancestral Gene Orders Using Conserved Intervals -- Sorting by Reversals with Common Intervals -- A Polynomial-Time Algorithm for the Matching of Crossing Contact-Map Patterns -- A 1.5-Approximation Algorithm for Sorting by Transpositions and Transreversals -- Algorithms for Finding Maximal-Scoring Segment Sets -- Gapped Local Similarity Search with Provable Guarantees -- Monotone Scoring of Patterns with Mismatches -- Suboptimal Local Alignments Across Multiple Scoring Schemes -- A Faster Reliable Algorithm to Estimate the p-Value of the Multinomial llr Statistic -- Adding Hidden Nodes to Gene Networks -- Joint Analysis of DNA Copy Numbers and Gene Expression Levels -- Searching for Regulatory Elements of Alternative Splicing Events Using Phylogenetic Footprinting -- Supervised Learning-Aided Optimization of Expert-Driven Functional Protein Sequence Annotation -- Multiple Vector Seeds for Protein Alignment -- Solving the Protein Threading Problem by Lagrangian Relaxation -- Protein-Protein Interfaces: Recognition of Similar Spatial and Chemical Organizations -- ATDD: An Algorithmic Tool for Domain Discovery in Protein Sequences -- Local Search Heuristic for Rigid Protein Docking -- Sequence Database Compression for Peptide Identification from Tandem Mass Spectra -- Linear Reduction for Haplotype Inference -- A New Integer Programming Formulation for the Pure Parsimony Problem in Haplotype Analysis -- Fast Hare: A Fast Heuristic for Single Individual SNP Haplotype Reconstruction -- Approximation Algorithms for the Selection of Robust Tag SNPs -- The Minisatellite Transformation Problem Revisited: A Run Length Encoded Approach -- A Faster and More Space-Efficient Algorithm for Inferring Arc-Annotations of RNA Sequences Through Alignment -- New Algorithms for Multiple DNA Sequence Alignment -- Chaining Algorithms for Alignment of Draft Sequence -- Translation Initiation Sites Prediction with Mixture Gaussian Models -- Online Consensus and Agreement of Phylogenetic Trees -- Relation of Residues in the Variable Region of 16S rDNA Sequences and Their Relevance to Genus-Specificity -- Topological Rearrangements and Local Search Method for Tandem Duplication Trees -- Phylogenetic Super-networks from Partial Trees -- Genome Identification and Classification by Short Oligo Arrays -- Novel Tree Edit Operations for RNA Secondary Structure Comparison -- The Most Probable Labeling Problem in HMMs and Its Application to Bioinformatics -- Integrating Sample-Driven and Pattern-Driven Approaches in Motif Finding -- Finding Optimal Pairs of Patterns -- Finding Missing Patterns. |
| Record Nr. | UNINA-9910768471403321 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2004 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||