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Managing biogeochemical cycles and rhizosphere ecology for sustainable production of Appalachian pasture and amenity grasses ... annual report
| Managing biogeochemical cycles and rhizosphere ecology for sustainable production of Appalachian pasture and amenity grasses ... annual report |
| Pubbl/distr/stampa | Washington, D.C., : U.S. Dept. of Agriculture, Agricultural Research Service |
| Descrizione fisica | : HTML files |
| Disciplina | 631 |
| Soggetto topico |
Biogeochemical cycles - Appalachian Region
Rhizosphere Soil ecology - Appalachian Region Biogeochemical cycles Soil ecology |
| Soggetto genere / forma | Periodicals. |
| ISSN | 1948-9005 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Periodico |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910693471303321 |
| Washington, D.C., : U.S. Dept. of Agriculture, Agricultural Research Service | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Minirhizotron observation tubes : methods and applications for measuring rhizosphere dynamics / / editor, H. M. Taylor ; sponsored by Soil Science Society of America and Crop Science Society of America
| Minirhizotron observation tubes : methods and applications for measuring rhizosphere dynamics / / editor, H. M. Taylor ; sponsored by Soil Science Society of America and Crop Science Society of America |
| Pubbl/distr/stampa | Madison, Wisconsin : , : American Society of Agronomy : , : Crop Science Society of America : , : Soil Science Society of America, , 1987 |
| Descrizione fisica | 1 online resource (xiv, 143 pages) |
| Disciplina | 581.10428 |
| Collana | ASA Special Publication |
| Soggetto topico |
Rhizosphere
Minirhizotrons |
| Soggetto genere / forma | Electronic books. |
| ISBN | 0-89118-316-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910555023303321 |
| Madison, Wisconsin : , : American Society of Agronomy : , : Crop Science Society of America : , : Soil Science Society of America, , 1987 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Minirhizotron observation tubes : methods and applications for measuring rhizosphere dynamics / / editor, H. M. Taylor ; sponsored by Soil Science Society of America and Crop Science Society of America
| Minirhizotron observation tubes : methods and applications for measuring rhizosphere dynamics / / editor, H. M. Taylor ; sponsored by Soil Science Society of America and Crop Science Society of America |
| Pubbl/distr/stampa | Madison, Wisconsin : , : American Society of Agronomy : , : Crop Science Society of America : , : Soil Science Society of America, , 1987 |
| Descrizione fisica | 1 online resource (xiv, 143 pages) |
| Disciplina | 581.10428 |
| Collana | ASA Special Publication |
| Soggetto topico |
Rhizosphere
Minirhizotrons |
| ISBN | 0-89118-316-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910829867203321 |
| Madison, Wisconsin : , : American Society of Agronomy : , : Crop Science Society of America : , : Soil Science Society of America, , 1987 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular ecology of rhizosphere microorganisms : biotechnology and the release of GMOs / / edited by F. O'Gara, D. N. Dowling, B. Boesten
| Molecular ecology of rhizosphere microorganisms : biotechnology and the release of GMOs / / edited by F. O'Gara, D. N. Dowling, B. Boesten |
| Pubbl/distr/stampa | Weinheim, Germany : , : VCH, , 1994 |
| Descrizione fisica | 1 online resource (193 p.) |
| Disciplina |
576
576.15 |
| Soggetto topico |
Rhizosphere
Microbial ecology |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-281-84290-7
9786611842901 3-527-61581-4 3-527-61580-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Molecular Ecology of Rhizosphere Microorganisms; Preface; List of Contributors; Content; 1 Current Challenges in Introducing Beneficial Microorganisms into the Rhizosphere; 1.1 Introduction and Definitions; 1.2 Relationship of Root Colonization to Biocontrol and Growth Promotion; 1.3 The Process of Colonization; 1.4 Effect of Biotic and Abiotic Factors; 1.5 Bacterial Traits Contributing to Rhizosphere Competence; 1.6 Population Dynamics of PGPR in the Field; 1.7 Release of Genetically Engineered Rhizobacteria; 1.8 Mechanisms of Biological Control by PGPR; 1.9 Inconsistant Performance of PGPR
1.10 Improving Root Colonizing and Biological Control1.11 Conclusion; 1.12 References; 2 Studies on Indigenous Endophytic Bacteria of Sweet Corn and Cotton; 2.1 Introduction; 2.2 Materials and Methods; 2.2.1 Media; 2.2.2 Field Experiments; 2.2.3 Sample Preparation and Surface Sterilization; 2.2.4 Growth Conditions, Bacterial Counts and Data Analysis; 2.2.5 Isolation and Preservation of Endophytes; 2.2.6 Strain Identification; 2.3 Results; 2.3.1 Population Dynamics; 2.3.2 Bacterial Identification; 2.4 Discussion; 2.5 References 3 Detection of Introduced Bacteria in the Rhizosphere Using Marker Genes and DNA Probes3.1 Introduction; 3.2 Methods; 3.2.1 Spontaneous Antibiotic Resistance; 3.2.2 Marker Genes; 3.2.2.1 New metabolic capability; 3.2.2.2 Heavy metal resistance; 3.2.2.3 Bioluminescence; 3.2.2.4 Herbicide resistance; 3.2.2.5 Transposons carrying antibiotic resistance; 3.2.3 DNA Probes; 3.2.4 Detection Limits, Amplification and Enrichment; 3.2.4.1 Increased Sensitivity by PCR Amplification; 3.2.4.2 Enrichment; 3.3 Case Study : ""kicking LacZY-labelled Pseudomonus cormgutu in the Field; 3.3.1 Pre-release Testing 3.3.2 Field Release3.4 The Ecological Fitness of Genetically-Engineered Bacteria; 3.4.1 Metabolic Load; 3.4.2 Reduced Fitness; 3.5 Conclusions; 3.6 References; 4 Impact of GEMMOs on Rhizosphere Population Dynamics; 4.1 Introduction; 4.2 A Most Probable Number (MPN) Recovery Technique; 4.3 The Need for an Eco-Physiological Index (EPI); 4.4 Conclusions; 4.5 References; 5 Developing Concepts in Biological Control: A Molecular Ecology Approach; 5.1 Introduction; 5.2 Siderophore-Mediated Competitive Exclusion of Phytopathogens; 5.3 Exploiting Antifungal Metabolites to Enhance Biological Control 5.4 Stability of Introduced Genes and Biological Containment Systems for GMO's5.5 Conclusion; 5.6 References; 6 Biocontrol of Root Diseases by Pseudomonas fluorescens CHAO: Current Concepts and Experimental Approaches; 6.1 Introduction; 6.2 Mechanistic Studies on Biocontrol Traits of Pseudomonus Fluorescens CHAO; 6.2.1 Chemical Identification of Extracellular Metabolites; 6.2.2 Genetic Manipulation of Strain CHAO; 6.2.3 Gnotobiotic System; 6.2.4 Mutations Affecting Biocontrol Efficacy, Regulation of Secondary Metabolism, and some Caveats; 6.2.5 Induced Systemic Resistance in Plants 6.2.6 Genetic Instability of Strain CHAO: Effects on Secondary Metabolism and Biological Control |
| Record Nr. | UNINA-9910144558103321 |
| Weinheim, Germany : , : VCH, , 1994 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular ecology of rhizosphere microorganisms : biotechnology and the release of GMOs / / edited by F. O'Gara, D. N. Dowling, B. Boesten
| Molecular ecology of rhizosphere microorganisms : biotechnology and the release of GMOs / / edited by F. O'Gara, D. N. Dowling, B. Boesten |
| Pubbl/distr/stampa | Weinheim, Germany : , : VCH, , 1994 |
| Descrizione fisica | 1 online resource (193 p.) |
| Disciplina |
576
576.15 |
| Soggetto topico |
Rhizosphere
Microbial ecology |
| ISBN |
1-281-84290-7
9786611842901 3-527-61581-4 3-527-61580-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Molecular Ecology of Rhizosphere Microorganisms; Preface; List of Contributors; Content; 1 Current Challenges in Introducing Beneficial Microorganisms into the Rhizosphere; 1.1 Introduction and Definitions; 1.2 Relationship of Root Colonization to Biocontrol and Growth Promotion; 1.3 The Process of Colonization; 1.4 Effect of Biotic and Abiotic Factors; 1.5 Bacterial Traits Contributing to Rhizosphere Competence; 1.6 Population Dynamics of PGPR in the Field; 1.7 Release of Genetically Engineered Rhizobacteria; 1.8 Mechanisms of Biological Control by PGPR; 1.9 Inconsistant Performance of PGPR
1.10 Improving Root Colonizing and Biological Control1.11 Conclusion; 1.12 References; 2 Studies on Indigenous Endophytic Bacteria of Sweet Corn and Cotton; 2.1 Introduction; 2.2 Materials and Methods; 2.2.1 Media; 2.2.2 Field Experiments; 2.2.3 Sample Preparation and Surface Sterilization; 2.2.4 Growth Conditions, Bacterial Counts and Data Analysis; 2.2.5 Isolation and Preservation of Endophytes; 2.2.6 Strain Identification; 2.3 Results; 2.3.1 Population Dynamics; 2.3.2 Bacterial Identification; 2.4 Discussion; 2.5 References 3 Detection of Introduced Bacteria in the Rhizosphere Using Marker Genes and DNA Probes3.1 Introduction; 3.2 Methods; 3.2.1 Spontaneous Antibiotic Resistance; 3.2.2 Marker Genes; 3.2.2.1 New metabolic capability; 3.2.2.2 Heavy metal resistance; 3.2.2.3 Bioluminescence; 3.2.2.4 Herbicide resistance; 3.2.2.5 Transposons carrying antibiotic resistance; 3.2.3 DNA Probes; 3.2.4 Detection Limits, Amplification and Enrichment; 3.2.4.1 Increased Sensitivity by PCR Amplification; 3.2.4.2 Enrichment; 3.3 Case Study : ""kicking LacZY-labelled Pseudomonus cormgutu in the Field; 3.3.1 Pre-release Testing 3.3.2 Field Release3.4 The Ecological Fitness of Genetically-Engineered Bacteria; 3.4.1 Metabolic Load; 3.4.2 Reduced Fitness; 3.5 Conclusions; 3.6 References; 4 Impact of GEMMOs on Rhizosphere Population Dynamics; 4.1 Introduction; 4.2 A Most Probable Number (MPN) Recovery Technique; 4.3 The Need for an Eco-Physiological Index (EPI); 4.4 Conclusions; 4.5 References; 5 Developing Concepts in Biological Control: A Molecular Ecology Approach; 5.1 Introduction; 5.2 Siderophore-Mediated Competitive Exclusion of Phytopathogens; 5.3 Exploiting Antifungal Metabolites to Enhance Biological Control 5.4 Stability of Introduced Genes and Biological Containment Systems for GMO's5.5 Conclusion; 5.6 References; 6 Biocontrol of Root Diseases by Pseudomonas fluorescens CHAO: Current Concepts and Experimental Approaches; 6.1 Introduction; 6.2 Mechanistic Studies on Biocontrol Traits of Pseudomonus Fluorescens CHAO; 6.2.1 Chemical Identification of Extracellular Metabolites; 6.2.2 Genetic Manipulation of Strain CHAO; 6.2.3 Gnotobiotic System; 6.2.4 Mutations Affecting Biocontrol Efficacy, Regulation of Secondary Metabolism, and some Caveats; 6.2.5 Induced Systemic Resistance in Plants 6.2.6 Genetic Instability of Strain CHAO: Effects on Secondary Metabolism and Biological Control |
| Record Nr. | UNISA-996198777903316 |
| Weinheim, Germany : , : VCH, , 1994 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Molecular ecology of rhizosphere microorganisms : biotechnology and the release of GMOs / / edited by F. O'Gara, D. N. Dowling, B. Boesten
| Molecular ecology of rhizosphere microorganisms : biotechnology and the release of GMOs / / edited by F. O'Gara, D. N. Dowling, B. Boesten |
| Pubbl/distr/stampa | Weinheim, Germany : , : VCH, , 1994 |
| Descrizione fisica | 1 online resource (193 p.) |
| Disciplina |
576
576.15 |
| Soggetto topico |
Rhizosphere
Microbial ecology |
| ISBN |
1-281-84290-7
9786611842901 3-527-61581-4 3-527-61580-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Molecular Ecology of Rhizosphere Microorganisms; Preface; List of Contributors; Content; 1 Current Challenges in Introducing Beneficial Microorganisms into the Rhizosphere; 1.1 Introduction and Definitions; 1.2 Relationship of Root Colonization to Biocontrol and Growth Promotion; 1.3 The Process of Colonization; 1.4 Effect of Biotic and Abiotic Factors; 1.5 Bacterial Traits Contributing to Rhizosphere Competence; 1.6 Population Dynamics of PGPR in the Field; 1.7 Release of Genetically Engineered Rhizobacteria; 1.8 Mechanisms of Biological Control by PGPR; 1.9 Inconsistant Performance of PGPR
1.10 Improving Root Colonizing and Biological Control1.11 Conclusion; 1.12 References; 2 Studies on Indigenous Endophytic Bacteria of Sweet Corn and Cotton; 2.1 Introduction; 2.2 Materials and Methods; 2.2.1 Media; 2.2.2 Field Experiments; 2.2.3 Sample Preparation and Surface Sterilization; 2.2.4 Growth Conditions, Bacterial Counts and Data Analysis; 2.2.5 Isolation and Preservation of Endophytes; 2.2.6 Strain Identification; 2.3 Results; 2.3.1 Population Dynamics; 2.3.2 Bacterial Identification; 2.4 Discussion; 2.5 References 3 Detection of Introduced Bacteria in the Rhizosphere Using Marker Genes and DNA Probes3.1 Introduction; 3.2 Methods; 3.2.1 Spontaneous Antibiotic Resistance; 3.2.2 Marker Genes; 3.2.2.1 New metabolic capability; 3.2.2.2 Heavy metal resistance; 3.2.2.3 Bioluminescence; 3.2.2.4 Herbicide resistance; 3.2.2.5 Transposons carrying antibiotic resistance; 3.2.3 DNA Probes; 3.2.4 Detection Limits, Amplification and Enrichment; 3.2.4.1 Increased Sensitivity by PCR Amplification; 3.2.4.2 Enrichment; 3.3 Case Study : ""kicking LacZY-labelled Pseudomonus cormgutu in the Field; 3.3.1 Pre-release Testing 3.3.2 Field Release3.4 The Ecological Fitness of Genetically-Engineered Bacteria; 3.4.1 Metabolic Load; 3.4.2 Reduced Fitness; 3.5 Conclusions; 3.6 References; 4 Impact of GEMMOs on Rhizosphere Population Dynamics; 4.1 Introduction; 4.2 A Most Probable Number (MPN) Recovery Technique; 4.3 The Need for an Eco-Physiological Index (EPI); 4.4 Conclusions; 4.5 References; 5 Developing Concepts in Biological Control: A Molecular Ecology Approach; 5.1 Introduction; 5.2 Siderophore-Mediated Competitive Exclusion of Phytopathogens; 5.3 Exploiting Antifungal Metabolites to Enhance Biological Control 5.4 Stability of Introduced Genes and Biological Containment Systems for GMO's5.5 Conclusion; 5.6 References; 6 Biocontrol of Root Diseases by Pseudomonas fluorescens CHAO: Current Concepts and Experimental Approaches; 6.1 Introduction; 6.2 Mechanistic Studies on Biocontrol Traits of Pseudomonus Fluorescens CHAO; 6.2.1 Chemical Identification of Extracellular Metabolites; 6.2.2 Genetic Manipulation of Strain CHAO; 6.2.3 Gnotobiotic System; 6.2.4 Mutations Affecting Biocontrol Efficacy, Regulation of Secondary Metabolism, and some Caveats; 6.2.5 Induced Systemic Resistance in Plants 6.2.6 Genetic Instability of Strain CHAO: Effects on Secondary Metabolism and Biological Control |
| Record Nr. | UNINA-9910829855603321 |
| Weinheim, Germany : , : VCH, , 1994 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn
| Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2013 |
| Descrizione fisica | 1 online resource (1312 p.) |
| Disciplina | 577.57 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Soil microbiology
Microbial genetics Microbial ecology Rhizosphere |
| ISBN |
1-118-29767-9
1-118-29766-0 1-299-40217-8 1-118-29773-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | section 1. Focus chapters -- section 2. Plant-mediated structuring of bacterial communities in the rhizosphere -- section 3. Plant genetics and rhizobacterial communities -- section 4. Hormones and other signals and rhizomicrobes -- section 5. Endophytes -- section 6. Symbiotic plant-microbe interactions -- section 7. PGPR, biocontrol, and disease-suppressive bacteria -- section 8. Biofilm formation and attachment to roots -- section 9. Quorum sensing and signaling -- section 10. Genomic sequencing and screening of genes/promoters activated in the natural environment -- section 11. Marker and reporter genes for plant-host interaction studies -- section 12. Phytoremediation and heavy-metal tolerance in the rhizosphere -- section 13. Climate change effects on soil/rhizosphere microbial communities -- section 14. Metagenomics and the soil/rhizosphere -- section 15. Engineering the rhizosphere : the "biased rhizosphere" concept -- section 16. Concluding chapters. |
| Record Nr. | UNINA-9910139037203321 |
| Hoboken, N.J., : Wiley-Blackwell, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn
| Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2013 |
| Descrizione fisica | 1 online resource (1312 p.) |
| Disciplina | 577.57 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Soil microbiology
Microbial genetics Microbial ecology Rhizosphere |
| ISBN |
1-118-29767-9
1-118-29766-0 1-299-40217-8 1-118-29773-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | section 1. Focus chapters -- section 2. Plant-mediated structuring of bacterial communities in the rhizosphere -- section 3. Plant genetics and rhizobacterial communities -- section 4. Hormones and other signals and rhizomicrobes -- section 5. Endophytes -- section 6. Symbiotic plant-microbe interactions -- section 7. PGPR, biocontrol, and disease-suppressive bacteria -- section 8. Biofilm formation and attachment to roots -- section 9. Quorum sensing and signaling -- section 10. Genomic sequencing and screening of genes/promoters activated in the natural environment -- section 11. Marker and reporter genes for plant-host interaction studies -- section 12. Phytoremediation and heavy-metal tolerance in the rhizosphere -- section 13. Climate change effects on soil/rhizosphere microbial communities -- section 14. Metagenomics and the soil/rhizosphere -- section 15. Engineering the rhizosphere : the "biased rhizosphere" concept -- section 16. Concluding chapters. |
| Record Nr. | UNINA-9910830253503321 |
| Hoboken, N.J., : Wiley-Blackwell, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular microbial ecology of the rhizosphere / / edited by Frans J. de Bruijn
| Molecular microbial ecology of the rhizosphere / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2013 |
| Descrizione fisica | 1 online resource (1312 p.) |
| Disciplina | 577.57 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Soil microbiology
Microbial genetics Microbial ecology Rhizosphere |
| ISBN |
1-118-29767-9
1-118-29766-0 1-299-40217-8 1-118-29773-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | section 1. Focus chapters -- section 2. Plant-mediated structuring of bacterial communities in the rhizosphere -- section 3. Plant genetics and rhizobacterial communities -- section 4. Hormones and other signals and rhizomicrobes -- section 5. Endophytes -- section 6. Symbiotic plant-microbe interactions -- section 7. PGPR, biocontrol, and disease-suppressive bacteria -- section 8. Biofilm formation and attachment to roots -- section 9. Quorum sensing and signaling -- section 10. Genomic sequencing and screening of genes/promoters activated in the natural environment -- section 11. Marker and reporter genes for plant-host interaction studies -- section 12. Phytoremediation and heavy-metal tolerance in the rhizosphere -- section 13. Climate change effects on soil/rhizosphere microbial communities -- section 14. Metagenomics and the soil/rhizosphere -- section 15. Engineering the rhizosphere : the "biased rhizosphere" concept -- section 16. Concluding chapters. |
| Record Nr. | UNINA-9911019435903321 |
| Hoboken, N.J., : Wiley-Blackwell, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Omics in soil science / / edied by Paolo Nannipieri, Giacomo Pietramellara and Giancarlo Renella, Department of Agrifood Production and Environmental Sciences, University of Florence, Italy
| Omics in soil science / / edied by Paolo Nannipieri, Giacomo Pietramellara and Giancarlo Renella, Department of Agrifood Production and Environmental Sciences, University of Florence, Italy |
| Pubbl/distr/stampa | Norfolk, England : , : Caister Academic Press, , [2014] |
| Descrizione fisica | 1 online resource (210 p.) |
| Disciplina | 631.4 |
| Soggetto topico |
Rhizosphere
Soil biochemistry Soil microbiology Soils |
| Soggetto genere / forma | Electronic books. |
| ISBN | 1-908230-94-0 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Contents; Contributors; Preface; 1: Soil as a Biological System; Introduction; Main characteristics of soil as a biological system; Soil biota and their functions in soil; Microbial diversity, soil functions and the holistic approach; The omics approaches in soil; 2: Functional Genomics Analysis of Key Bacterial Traits Involved in Rhizosphere Competence; Introduction; Bacterial species specifically selected by the rhizosphere; Bacterial functions enriched in the rhizosphere; Motility and chemotaxis: early phase traits required for rhizocompetence
Microbial growth in the rhizosphere: the contribution and relevance of central metabolismDenitrification: a promising model linking microbial metabolic flexibility and community structure; Surviving in the rhizosphere: the relevance of stress and detoxification traits; Secretion systems: important functional traits involved in rhizosphere competence; Secondary metabolism: specialized functions involved in competitive rhizosphere fitness; Conclusions and future directions; 3: Soil Metagenomics - Potential Applications and Methodological Problems; Introduction Metagenomics for fostering our understanding of soil habitatsA case study - the metagenomics assessment of the chitinolytic process in soil; Metagenomics for bioexploration; The search for novel chitin-degrading enzymes - a case study; Outlook; 4: Screening Phylogenetic and Functional Marker Genes in Soil Microbial Ecology; Introduction; Marker genes as biomarkers; Phylogenetic and functional marker genes; Methodologies for marker gene screening in soil samples; Primer and probe designing (non-protein-coding sequences and protein-coding sequences) strategies Experimental design for screening of the bacterial 16S rDNA marker gene with short read producing high-throughput sequencing technologiesConcluding remarks and potentials; 5: Soil Metatranscriptomics; Introduction; The experimental and bioinformatic workflow; Recent achievements in metatranscriptomics; Conclusions and outlook; 6: Soil Proteomics; Introduction; Soil proteomics; Specificity of soil proteomics; Conclusions; 7: Soil Volatile Organic Compounds as Tracers for Microbial Activities in Soils; Introduction; Soil smells?; Volatiles produced by microorganisms; Volatiles from plant roots Microbial volatiles affecting plant growthDegradation of VOCs; Retention, emission and measurement; Methods of VOC measurement; Microbial mass products; Conclusions; 8: Proteogenomics: A New Integrative Approach for a Better Description of Protein Diversity; Introduction; The current proteomic tools and approaches; Genome annotation of soil microflora gains in number but not in quality; Proteogenomics, mapping proteome data onto genome sequence; N-terminomics, new tools for an avalanche of results.; Contribution of proteogenomics to a better assessment of soil microflora; Concluding remarks 9: Analysis of Soil Metagenomes using the MEtaGenome ANalyser (MEGAN) |
| Record Nr. | UNINA-9910463032503321 |
| Norfolk, England : , : Caister Academic Press, , [2014] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Soggetto topico
-
Rhizosphere
(15)
- Microbial ecology (6)
- Soil microbiology (6)
- Microbial genetics (3)
- Soil biochemistry (3)