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Algorithmic and artificial intelligence methods for protein bioinformatics / / edited by Yi Pan, Jianxin Wang, Min Li
| Algorithmic and artificial intelligence methods for protein bioinformatics / / edited by Yi Pan, Jianxin Wang, Min Li |
| Edizione | [First edition.] |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley : , : IEEE Computer Society, , [2014] |
| Descrizione fisica | 1 online resource (708 p.) |
| Disciplina | 572/.6 |
| Collana | Wiley series in bioinformatics |
| Soggetto topico |
Proteins - Analysis - Mathematics
Bioinformatics Artificial intelligence |
| ISBN |
1-118-56781-1
1-118-56786-2 1-118-56792-7 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
PREFACE ix -- CONTRIBUTORS xv -- I FROM PROTEIN SEQUENCE TO STRUCTURE -- 1 EMPHASIZING THE ROLE OF PROTEINS IN CONSTRUCTION OF THE DEVELOPMENTAL GENETIC TOOLKIT IN PLANTS 3 -- Anamika Basu and Anasua Sarkar -- 2 PROTEIN SEQUENCE MOTIF INFORMATION DISCOVERY 41 -- Bernard Chen -- 3 IDENTIFYING CALCIUM BINDING SITES IN PROTEINS 57 -- Hui Liu and Hai Deng -- 4 REVIEW OF IMBALANCED DATA LEARNING FOR PROTEIN METHYLATION PREDICTION 71 -- Zejin Ding and Yan-Qing Zhang -- 5 ANALYSIS AND PREDICTION OF PROTEIN POSTTRANSLATIONAL MODIFICATION SITES 91 -- Jianjiong Gao, Qiuming Yao, Curtis Harrison Bollinger, and Dong Xu -- II PROTEIN ANALYSIS AND PREDICTION -- 6 PROTEIN LOCAL STRUCTURE PREDICTION 109 -- Wei Zhong, Jieyue He, Robert W. Harrison, Phang C. Tai, and Yi Pan -- 7 PROTEIN STRUCTURAL BOUNDARY PREDICTION 125 -- Gulsah Altun -- 8 PREDICTION OF RNA BINDING SITES IN PROTEINS 153 -- Zhi-Ping Liu and Luonan Chen -- 9 ALGORITHMIC FRAMEWORKS FOR PROTEIN DISULFIDE CONNECTIVITY DETERMINATION 171 -- Rahul Singh, William Murad, and Timothy Lee -- 10 PROTEIN CONTACT ORDER PREDICTION: UPDATE 205 -- Yi Shi, Jianjun Zhou, David S. Wishart, and Guohui Lin -- 11 PROGRESS IN PREDICTION OF OXIDATION STATES OF CYSTEINES VIA COMPUTATIONAL APPROACHES 217 -- Aiguo Du, Hui Liu, Hai Deng, and Yi Pan -- 12 COMPUTATIONAL METHODS IN CRYOELECTRON MICROSCOPY 3D STRUCTURE RECONSTRUCTION 231 -- Fa Zhang, Xiaohua Wan, and Zhiyong Liu -- III PROTEIN STRUCTURE ALIGNMENT AND ASSESSMENT -- 13 FUNDAMENTALS OF PROTEIN STRUCTURE ALIGNMENT 255 -- Mark Brandt, Allen Holder, and Yosi Shibberu -- 14 DISCOVERING 3D PROTEIN STRUCTURES FOR OPTIMAL STRUCTURE ALIGNMENT 281 -- TomáS Novosád, Václav Sna-Sel, Ajith Abraham, and Jack Y. Yang -- 15 ALGORITHMIC METHODOLOGIES FOR DISCOVERY OF NONSEQUENTIAL PROTEIN STRUCTURE SIMILARITIES 299 -- Bhaskar DasGupta, Joseph Dundas, and Jie Liang -- 16 FRACTAL RELATED METHODS FOR PREDICTING PROTEIN STRUCTURE CLASSES AND FUNCTIONS 317 -- Zu-Guo Yu, Vo Anh, Jian-Yi Yang, and Shao-Ming Zhu.
17 PROTEIN TERTIARY MODEL ASSESSMENT 339 -- Anjum Chida, Robert W. Harrison, and Yan-Qing Zhang -- IV PROTEIN-PROTEIN ANALYSIS OF BIOLOGICAL NETWORKS -- 18 NETWORK ALGORITHMS FOR PROTEIN INTERACTIONS 357 -- Suely Oliveira -- 19 IDENTIFYING PROTEIN COMPLEXES FROM PROTEIN-PROTEIN INTERACTION NETWORKS 377 -- Jianxin Wang, Min Li, and Xiaoqing Peng -- 20 PROTEIN FUNCTIONAL MODULE ANALYSIS WITH PROTEIN-PROTEIN INTERACTION (PPI) NETWORKS 393 -- Lei Shi, Xiujuan Lei, and Aidong Zhang -- 21 EFFICIENT ALIGNMENTS OF METABOLIC NETWORKS WITH BOUNDED TREEWIDTH 413 -- Qiong Cheng, Piotr Berman, Robert W. Harrison, and Alexander Zelikovsky -- 22 PROTEIN-PROTEIN INTERACTION NETWORK ALIGNMENT: ALGORITHMS AND TOOLS 431 -- Valeria Fionda -- V APPLICATION OF PROTEIN BIOINFORMATICS -- 23 PROTEIN-RELATED DRUG ACTIVITY COMPARISON USING SUPPORT VECTOR MACHINES 451 -- Wei Zhong and Jieyue He -- 24 FINDING REPETITIONS IN BIOLOGICAL NETWORKS: CHALLENGES, TRENDS, AND APPLICATIONS 461 -- Simona E. Rombo -- 25 MeTaDoR: ONLINE RESOURCE AND PREDICTION SERVER FOR MEMBRANE TARGETING PERIPHERAL PROTEINS 481 -- Nitin Bhardwaj, Morten Källberg, Wonhwa Cho, and Hui Lu -- 26 BIOLOGICAL NETWORKS-BASED ANALYSIS OF GENE EXPRESSION SIGNATURES 495 -- Gang Chen and Jianxin Wang -- INDEX 507. |
| Record Nr. | UNINA-9910138993603321 |
| Hoboken, New Jersey : , : Wiley : , : IEEE Computer Society, , [2014] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Algorithmic and artificial intelligence methods for protein bioinformatics / / edited by Yi Pan, Jianxin Wang, Min Li
| Algorithmic and artificial intelligence methods for protein bioinformatics / / edited by Yi Pan, Jianxin Wang, Min Li |
| Edizione | [First edition.] |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley : , : IEEE Computer Society, , [2014] |
| Descrizione fisica | 1 online resource (708 p.) |
| Disciplina | 572/.6 |
| Collana | Wiley series in bioinformatics |
| Soggetto topico |
Proteins - Analysis - Mathematics
Bioinformatics Artificial intelligence |
| ISBN |
1-118-56781-1
1-118-56786-2 1-118-56792-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
PREFACE ix -- CONTRIBUTORS xv -- I FROM PROTEIN SEQUENCE TO STRUCTURE -- 1 EMPHASIZING THE ROLE OF PROTEINS IN CONSTRUCTION OF THE DEVELOPMENTAL GENETIC TOOLKIT IN PLANTS 3 -- Anamika Basu and Anasua Sarkar -- 2 PROTEIN SEQUENCE MOTIF INFORMATION DISCOVERY 41 -- Bernard Chen -- 3 IDENTIFYING CALCIUM BINDING SITES IN PROTEINS 57 -- Hui Liu and Hai Deng -- 4 REVIEW OF IMBALANCED DATA LEARNING FOR PROTEIN METHYLATION PREDICTION 71 -- Zejin Ding and Yan-Qing Zhang -- 5 ANALYSIS AND PREDICTION OF PROTEIN POSTTRANSLATIONAL MODIFICATION SITES 91 -- Jianjiong Gao, Qiuming Yao, Curtis Harrison Bollinger, and Dong Xu -- II PROTEIN ANALYSIS AND PREDICTION -- 6 PROTEIN LOCAL STRUCTURE PREDICTION 109 -- Wei Zhong, Jieyue He, Robert W. Harrison, Phang C. Tai, and Yi Pan -- 7 PROTEIN STRUCTURAL BOUNDARY PREDICTION 125 -- Gulsah Altun -- 8 PREDICTION OF RNA BINDING SITES IN PROTEINS 153 -- Zhi-Ping Liu and Luonan Chen -- 9 ALGORITHMIC FRAMEWORKS FOR PROTEIN DISULFIDE CONNECTIVITY DETERMINATION 171 -- Rahul Singh, William Murad, and Timothy Lee -- 10 PROTEIN CONTACT ORDER PREDICTION: UPDATE 205 -- Yi Shi, Jianjun Zhou, David S. Wishart, and Guohui Lin -- 11 PROGRESS IN PREDICTION OF OXIDATION STATES OF CYSTEINES VIA COMPUTATIONAL APPROACHES 217 -- Aiguo Du, Hui Liu, Hai Deng, and Yi Pan -- 12 COMPUTATIONAL METHODS IN CRYOELECTRON MICROSCOPY 3D STRUCTURE RECONSTRUCTION 231 -- Fa Zhang, Xiaohua Wan, and Zhiyong Liu -- III PROTEIN STRUCTURE ALIGNMENT AND ASSESSMENT -- 13 FUNDAMENTALS OF PROTEIN STRUCTURE ALIGNMENT 255 -- Mark Brandt, Allen Holder, and Yosi Shibberu -- 14 DISCOVERING 3D PROTEIN STRUCTURES FOR OPTIMAL STRUCTURE ALIGNMENT 281 -- TomáS Novosád, Václav Sna-Sel, Ajith Abraham, and Jack Y. Yang -- 15 ALGORITHMIC METHODOLOGIES FOR DISCOVERY OF NONSEQUENTIAL PROTEIN STRUCTURE SIMILARITIES 299 -- Bhaskar DasGupta, Joseph Dundas, and Jie Liang -- 16 FRACTAL RELATED METHODS FOR PREDICTING PROTEIN STRUCTURE CLASSES AND FUNCTIONS 317 -- Zu-Guo Yu, Vo Anh, Jian-Yi Yang, and Shao-Ming Zhu.
17 PROTEIN TERTIARY MODEL ASSESSMENT 339 -- Anjum Chida, Robert W. Harrison, and Yan-Qing Zhang -- IV PROTEIN-PROTEIN ANALYSIS OF BIOLOGICAL NETWORKS -- 18 NETWORK ALGORITHMS FOR PROTEIN INTERACTIONS 357 -- Suely Oliveira -- 19 IDENTIFYING PROTEIN COMPLEXES FROM PROTEIN-PROTEIN INTERACTION NETWORKS 377 -- Jianxin Wang, Min Li, and Xiaoqing Peng -- 20 PROTEIN FUNCTIONAL MODULE ANALYSIS WITH PROTEIN-PROTEIN INTERACTION (PPI) NETWORKS 393 -- Lei Shi, Xiujuan Lei, and Aidong Zhang -- 21 EFFICIENT ALIGNMENTS OF METABOLIC NETWORKS WITH BOUNDED TREEWIDTH 413 -- Qiong Cheng, Piotr Berman, Robert W. Harrison, and Alexander Zelikovsky -- 22 PROTEIN-PROTEIN INTERACTION NETWORK ALIGNMENT: ALGORITHMS AND TOOLS 431 -- Valeria Fionda -- V APPLICATION OF PROTEIN BIOINFORMATICS -- 23 PROTEIN-RELATED DRUG ACTIVITY COMPARISON USING SUPPORT VECTOR MACHINES 451 -- Wei Zhong and Jieyue He -- 24 FINDING REPETITIONS IN BIOLOGICAL NETWORKS: CHALLENGES, TRENDS, AND APPLICATIONS 461 -- Simona E. Rombo -- 25 MeTaDoR: ONLINE RESOURCE AND PREDICTION SERVER FOR MEMBRANE TARGETING PERIPHERAL PROTEINS 481 -- Nitin Bhardwaj, Morten Källberg, Wonhwa Cho, and Hui Lu -- 26 BIOLOGICAL NETWORKS-BASED ANALYSIS OF GENE EXPRESSION SIGNATURES 495 -- Gang Chen and Jianxin Wang -- INDEX 507. |
| Record Nr. | UNINA-9910828144803321 |
| Hoboken, New Jersey : , : Wiley : , : IEEE Computer Society, , [2014] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
