Advances in Bioinformatics [[electronic resource] /] / edited by Vijai Singh, Ajay Kumar |
Autore | Singh Vijai |
Edizione | [2nd ed. 2024.] |
Pubbl/distr/stampa | Singapore : , : Springer Nature Singapore : , : Imprint : Springer, , 2024 |
Descrizione fisica | 1 online resource (364 pages) |
Disciplina | 570.285 |
Altri autori (Persone) | KumarAjay |
Soggetto topico |
Bioinformatics
Proteins Genomics Chemoinformatics Artificial intelligence Cheminformatics Artificial Intelligence |
ISBN | 981-9984-01-7 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | Ch 1 Revolutionizing Genomics: Exploring the Potential of Next-Generation Sequencing -- Ch 2 Advances in structural bioinformatics -- Ch 3 Functional genomics and network biology -- Ch 4 Bioinformatics in gene and genome analysis -- Ch 5 Role of bioinformatics in non-coding RNA analysis -- Ch 6 Next generation sequencing in healthcare -- Ch 7 Genome scale modelling for novel drug targets -- Ch 8 Role of bioinformatics in genome editing -- Ch 9 Bioinformatics in pathway identification, design, modelling and simulation -- Ch 10 Integration of Metabolomics and Flux Balance Analysis: Applications and Challenges -- Ch 11 Bioinformatics in drug discovery -- Ch 12 Use of bioinformatics in high throughput drug screening -- Ch 13 Bioinformatics in precision medicine and healthcare -- Ch 14 Role of bioinformatics in data mining and big data analysis -- Ch 15 Unveiling the Dynamic Role of Bioinformatics in Automation for Efficient and Accurate Data Processing and Interpretation -- Ch 16 Artificial intelligence and machine learning in bioinformatics -- Ch 17 Bioinformatics in preventive medicine and epidemiology. |
Record Nr. | UNINA-9910831020603321 |
Singh Vijai
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Singapore : , : Springer Nature Singapore : , : Imprint : Springer, , 2024 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in Chemical Physics [[electronic resource] ] : Proteins: A Theoretical Perspective of Dynamics, Structure, and Thermodynamics |
Autore | Brooks Charles L |
Pubbl/distr/stampa | Hoboken, : Wiley, 2009 |
Descrizione fisica | 1 online resource (278 p.) |
Disciplina |
541.305
541/.08 547.75 |
Altri autori (Persone) |
KarplusMartin
PettittB. Montgomery |
Collana | Advances in chemical physics |
Soggetto topico |
Chemistry, Physical and theoretical -- Periodicals
Chemistry, Physical and theoretical Physics -- Periodicals Physics Proteins |
Soggetto genere / forma | Electronic books. |
ISBN | 0-470-14120-4 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | PROTEINS: A THEORETICAL PERSPECTIVE OF DYNAMICS, STRUCTURE, AND THERMODYNAMICS; CONTENTS; I. INTRODUCTION; II. PROTEIN STRUCTURE AND DYNAMICS-AN OVERVIEW; III. POTENTIAL FUNCTIONS; IV. DYNAMICAL SIMULATION METHODS; V. THERMODYNAMIC METHODS; VI. ATOM AND SIDECHAIN MOTIONS; VII. RIGID-BODY MOTIONS; VIII. LARGER-SCALE MOTIONS; IX. SOLVENT INFLUENCE ON PROTEIN DYNAMICS; X. THERMODYNAMIC ASPECTS; XI. EXPERIMENTAL COMPARISONS AND ANALYSIS; XII. CONCLUDING DISCUSSION; REFERENCES; INDEX |
Record Nr. | UNINA-9910144273703321 |
Brooks Charles L
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Hoboken, : Wiley, 2009 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in Chemical Physics [[electronic resource] ] : Proteins: A Theoretical Perspective of Dynamics, Structure, and Thermodynamics |
Autore | Brooks Charles L |
Pubbl/distr/stampa | Hoboken, : Wiley, 2009 |
Descrizione fisica | 1 online resource (278 p.) |
Disciplina |
541.305
541/.08 547.75 |
Altri autori (Persone) |
KarplusMartin
PettittB. Montgomery |
Collana | Advances in chemical physics |
Soggetto topico |
Chemistry, Physical and theoretical -- Periodicals
Chemistry, Physical and theoretical Physics -- Periodicals Physics Proteins |
ISBN | 0-470-14120-4 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | PROTEINS: A THEORETICAL PERSPECTIVE OF DYNAMICS, STRUCTURE, AND THERMODYNAMICS; CONTENTS; I. INTRODUCTION; II. PROTEIN STRUCTURE AND DYNAMICS-AN OVERVIEW; III. POTENTIAL FUNCTIONS; IV. DYNAMICAL SIMULATION METHODS; V. THERMODYNAMIC METHODS; VI. ATOM AND SIDECHAIN MOTIONS; VII. RIGID-BODY MOTIONS; VIII. LARGER-SCALE MOTIONS; IX. SOLVENT INFLUENCE ON PROTEIN DYNAMICS; X. THERMODYNAMIC ASPECTS; XI. EXPERIMENTAL COMPARISONS AND ANALYSIS; XII. CONCLUDING DISCUSSION; REFERENCES; INDEX |
Record Nr. | UNINA-9910829881103321 |
Brooks Charles L
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Hoboken, : Wiley, 2009 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in Chemical Physics [[electronic resource] ] : Proteins: A Theoretical Perspective of Dynamics, Structure, and Thermodynamics |
Autore | Brooks Charles L |
Pubbl/distr/stampa | Hoboken, : Wiley, 2009 |
Descrizione fisica | 1 online resource (278 p.) |
Disciplina |
541.305
541/.08 547.75 |
Altri autori (Persone) |
KarplusMartin
PettittB. Montgomery |
Collana | Advances in chemical physics |
Soggetto topico |
Chemistry, Physical and theoretical -- Periodicals
Chemistry, Physical and theoretical Physics -- Periodicals Physics Proteins |
ISBN | 0-470-14120-4 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | PROTEINS: A THEORETICAL PERSPECTIVE OF DYNAMICS, STRUCTURE, AND THERMODYNAMICS; CONTENTS; I. INTRODUCTION; II. PROTEIN STRUCTURE AND DYNAMICS-AN OVERVIEW; III. POTENTIAL FUNCTIONS; IV. DYNAMICAL SIMULATION METHODS; V. THERMODYNAMIC METHODS; VI. ATOM AND SIDECHAIN MOTIONS; VII. RIGID-BODY MOTIONS; VIII. LARGER-SCALE MOTIONS; IX. SOLVENT INFLUENCE ON PROTEIN DYNAMICS; X. THERMODYNAMIC ASPECTS; XI. EXPERIMENTAL COMPARISONS AND ANALYSIS; XII. CONCLUDING DISCUSSION; REFERENCES; INDEX |
Record Nr. | UNINA-9910840589003321 |
Brooks Charles L
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Hoboken, : Wiley, 2009 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in protein and peptide sciences . Volume 1 / / Ben M. Dunn, editor |
Pubbl/distr/stampa | Sharjah : , : Bentham Science Publishers, , 2013 |
Descrizione fisica | 1 online resource (911 p.) |
Altri autori (Persone) | DunnBen M |
Collana | Advances in Protein and Peptide Sciences |
Soggetto topico |
Proteins
Peptides |
Soggetto genere / forma | Electronic books. |
ISBN | 1-60805-487-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | Cover; Title; EUL; Contents; Foreword; Preface; List of Contributors; Section I; Chapter 01; Chapter 03; Chapter 04; Section II; Chapter 05; Chapter 06; Chapter 07; Section III; Chapter 08; Chapter 09; Chapter 10; Chapter 11; Chapter 12; Section IV; Chapter 13; Chapter 14; Chapter 15; Chapter 16; Chapter 17; Chapter 18; Chapter 19; Index |
Record Nr. | UNINA-9910463009803321 |
Sharjah : , : Bentham Science Publishers, , 2013 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in protein and peptide sciences . Volume 1 / / Ben M. Dunn, editor |
Pubbl/distr/stampa | Sharjah : , : Bentham Science Publishers, , 2013 |
Descrizione fisica | 1 online resource (911 p.) |
Altri autori (Persone) | DunnBen M |
Collana | Advances in Protein and Peptide Sciences |
Soggetto topico |
Proteins
Peptides |
ISBN | 1-60805-487-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | Cover; Title; EUL; Contents; Foreword; Preface; List of Contributors; Section I; Chapter 01; Chapter 03; Chapter 04; Section II; Chapter 05; Chapter 06; Chapter 07; Section III; Chapter 08; Chapter 09; Chapter 10; Chapter 11; Chapter 12; Section IV; Chapter 13; Chapter 14; Chapter 15; Chapter 16; Chapter 17; Chapter 18; Chapter 19; Index |
Record Nr. | UNINA-9910787635203321 |
Sharjah : , : Bentham Science Publishers, , 2013 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in protein and peptide sciences . Volume 1 / / Ben M. Dunn, editor |
Edizione | [1st ed.] |
Pubbl/distr/stampa | Sharjah : , : Bentham Science Publishers, , 2013 |
Descrizione fisica | 1 online resource (911 p.) |
Disciplina | 615.3 |
Altri autori (Persone) | DunnBen M |
Collana | Advances in Protein and Peptide Sciences |
Soggetto topico |
Proteins
Peptides |
ISBN | 1-60805-487-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | Cover; Title; EUL; Contents; Foreword; Preface; List of Contributors; Section I; Chapter 01; Chapter 03; Chapter 04; Section II; Chapter 05; Chapter 06; Chapter 07; Section III; Chapter 08; Chapter 09; Chapter 10; Chapter 11; Chapter 12; Section IV; Chapter 13; Chapter 14; Chapter 15; Chapter 16; Chapter 17; Chapter 18; Chapter 19; Index |
Record Nr. | UNINA-9910820288303321 |
Sharjah : , : Bentham Science Publishers, , 2013 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in protein chemisrty and structural biology . Volume ninety seven : metal-containing enzymes / / edited by Christo Z. Christov |
Pubbl/distr/stampa | Waltham, Massachusetts ; ; San Diego, California : , : Academic Press, , 2014 |
Descrizione fisica | 1 online resource (174 p.) |
Disciplina | 572.7 |
Soggetto topico | Proteins |
Soggetto genere / forma | Electronic books. |
ISBN |
0-12-800012-0
0-12-800788-5 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Front Cover; Metal-Containing Enzymes; Copyright; Contents; Contributors; Preface; Chapter 1: Type-3 Copper Proteins: Recent Advances on Polyphenol Oxidases; 1. Introduction; 2. Primary Structure and Molecular Weights of PPOs; 2.1. General sequence structure; 2.2. Core domain, C-terminal domain, and its proteolytic cleavage site; 2.3. Conserved amino acid motifs in the core domain; 2.4. Conserved amino acid motifs in the C-terminal domain; 2.5. Transit peptide and location of PPOs; 2.6. Sequence homologies within PPOs; 2.7. In vitro activation of PPOs; 2.8. In vivo activation of PPOs
2.9. Mutants of PPOs2.9.1. Mutants of plant PPOs; 2.9.2. Mutants of fungal PPOs; 2.9.3. Mutants of bacterial PPOs; 3. Oxo Complex; 3.1. Oxo complex investigated by UV/vis absorption spectroscopy; 3.2. Oxo complex investigated by CD spectroscopy; 3.3. Oxo complex investigated by resonance Raman spectroscopy; 3.4. Oxo complex of catechol oxidase; 3.5. Oxo complex of tyrosinase; 3.6. Oxo complex of aureusidin synthase; 3.7. Oxo complex of hemocyanin; 4. X-ray Crystallographic Structural Data of PPOs and Hemocyanins; 4.1. Published structures in the protein data bank 4.1.1. Published structures in the PDB of hemocyanins4.1.2. Published structures in the PDB of catechol oxidases; 4.1.3. Published structures in the PDB of tyrosinases; 4.2. Structural differences of tyrosinases and catechol oxidases; 5. Conclusions and Outlook; Acknowledgments; References; Chapter 2: Biophysical Studies of Matrix Metalloproteinase/Triple-Helix Complexes; 1. MMPs and Collagen Hydrolysis; 2. Structures of Full-Length, Collagenolytic MMPs in Solution and in the Solid State; 3. Structural Evaluation of MMP Interactions with Collagen; 4. Mechanism of Collagenolysis 5. Heterogeneity in MMP StructuresAcknowledgment; References; Chapter 3: Catalytic Mechanisms of Metallohydrolases Containing Two Metal Ions; 1. Introduction; 2. Metallo-β-Lactamases, Major Culprits in the Emergence of Antibiotic Resistance; 3. Methionine Aminopeptidase, a Target for Novel Anticancer Drugs; 4. Glycerophosphodiesterase, a Very Promiscuous Potential Bioremediator; 5. PAP, an Alternative Target to Treat Osteoporosis; 6. Conclusions and Outlook: Agmatinase, an Emerging Target for Biotechnological Applications; Acknowledgments; References Chapter 4: Applications of Quantum Mechanical/Molecular Mechanical Methods to the Chemical Insertion Step of DNA and RNA ...1. Introduction; 2. Methods for Describing Reactive Pathways; 3. DNA Polymerase β; 3.1. Abashkin, Erickson, and Burt (2001): A cluster QM calculation at steps along a proposed reaction path; 3.2. Rittenhouse, Apostoluk, Miller, and Straatsma (2003): A cluster QM calculation on the prechemistry complex of Pol β; 3.3. Sawaya et al., 1997); 3.4. Batra et al., 2006); 3.5. Batra et al., 2008) 3.6. Batra et al. (2013): A QM/MM study based on the X-ray crystal structure of the Pol β variant D256E |
Record Nr. | UNINA-9910465130003321 |
Waltham, Massachusetts ; ; San Diego, California : , : Academic Press, , 2014 | ||
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Lo trovi qui: Univ. Federico II | ||
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Advances in protein chemistry and structural biology . Volume ninety seven : metal-containing enzymes / / edited by Christo Z. Christov |
Pubbl/distr/stampa | Waltham, Massachusetts ; ; San Diego, California : , : Academic Press, , 2014 |
Descrizione fisica | 1 online resource (174 p.) |
Disciplina | 572.7 |
Soggetto topico | Proteins |
ISBN |
0-12-800012-0
0-12-800788-5 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Front Cover; Metal-Containing Enzymes; Copyright; Contents; Contributors; Preface; Chapter 1: Type-3 Copper Proteins: Recent Advances on Polyphenol Oxidases; 1. Introduction; 2. Primary Structure and Molecular Weights of PPOs; 2.1. General sequence structure; 2.2. Core domain, C-terminal domain, and its proteolytic cleavage site; 2.3. Conserved amino acid motifs in the core domain; 2.4. Conserved amino acid motifs in the C-terminal domain; 2.5. Transit peptide and location of PPOs; 2.6. Sequence homologies within PPOs; 2.7. In vitro activation of PPOs; 2.8. In vivo activation of PPOs
2.9. Mutants of PPOs2.9.1. Mutants of plant PPOs; 2.9.2. Mutants of fungal PPOs; 2.9.3. Mutants of bacterial PPOs; 3. Oxo Complex; 3.1. Oxo complex investigated by UV/vis absorption spectroscopy; 3.2. Oxo complex investigated by CD spectroscopy; 3.3. Oxo complex investigated by resonance Raman spectroscopy; 3.4. Oxo complex of catechol oxidase; 3.5. Oxo complex of tyrosinase; 3.6. Oxo complex of aureusidin synthase; 3.7. Oxo complex of hemocyanin; 4. X-ray Crystallographic Structural Data of PPOs and Hemocyanins; 4.1. Published structures in the protein data bank 4.1.1. Published structures in the PDB of hemocyanins4.1.2. Published structures in the PDB of catechol oxidases; 4.1.3. Published structures in the PDB of tyrosinases; 4.2. Structural differences of tyrosinases and catechol oxidases; 5. Conclusions and Outlook; Acknowledgments; References; Chapter 2: Biophysical Studies of Matrix Metalloproteinase/Triple-Helix Complexes; 1. MMPs and Collagen Hydrolysis; 2. Structures of Full-Length, Collagenolytic MMPs in Solution and in the Solid State; 3. Structural Evaluation of MMP Interactions with Collagen; 4. Mechanism of Collagenolysis 5. Heterogeneity in MMP StructuresAcknowledgment; References; Chapter 3: Catalytic Mechanisms of Metallohydrolases Containing Two Metal Ions; 1. Introduction; 2. Metallo-β-Lactamases, Major Culprits in the Emergence of Antibiotic Resistance; 3. Methionine Aminopeptidase, a Target for Novel Anticancer Drugs; 4. Glycerophosphodiesterase, a Very Promiscuous Potential Bioremediator; 5. PAP, an Alternative Target to Treat Osteoporosis; 6. Conclusions and Outlook: Agmatinase, an Emerging Target for Biotechnological Applications; Acknowledgments; References Chapter 4: Applications of Quantum Mechanical/Molecular Mechanical Methods to the Chemical Insertion Step of DNA and RNA ...1. Introduction; 2. Methods for Describing Reactive Pathways; 3. DNA Polymerase β; 3.1. Abashkin, Erickson, and Burt (2001): A cluster QM calculation at steps along a proposed reaction path; 3.2. Rittenhouse, Apostoluk, Miller, and Straatsma (2003): A cluster QM calculation on the prechemistry complex of Pol β; 3.3. Sawaya et al., 1997); 3.4. Batra et al., 2006); 3.5. Batra et al., 2008) 3.6. Batra et al. (2013): A QM/MM study based on the X-ray crystal structure of the Pol β variant D256E |
Record Nr. | UNINA-9910792224403321 |
Waltham, Massachusetts ; ; San Diego, California : , : Academic Press, , 2014 | ||
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Lo trovi qui: Univ. Federico II | ||
|
Advances in protein chemistry and structural biology . Volume ninety seven : metal-containing enzymes / / edited by Christo Z. Christov |
Pubbl/distr/stampa | Waltham, Massachusetts ; ; San Diego, California : , : Academic Press, , 2014 |
Descrizione fisica | 1 online resource (174 p.) |
Disciplina | 572.7 |
Soggetto topico | Proteins |
ISBN |
0-12-800012-0
0-12-800788-5 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Front Cover; Metal-Containing Enzymes; Copyright; Contents; Contributors; Preface; Chapter 1: Type-3 Copper Proteins: Recent Advances on Polyphenol Oxidases; 1. Introduction; 2. Primary Structure and Molecular Weights of PPOs; 2.1. General sequence structure; 2.2. Core domain, C-terminal domain, and its proteolytic cleavage site; 2.3. Conserved amino acid motifs in the core domain; 2.4. Conserved amino acid motifs in the C-terminal domain; 2.5. Transit peptide and location of PPOs; 2.6. Sequence homologies within PPOs; 2.7. In vitro activation of PPOs; 2.8. In vivo activation of PPOs
2.9. Mutants of PPOs2.9.1. Mutants of plant PPOs; 2.9.2. Mutants of fungal PPOs; 2.9.3. Mutants of bacterial PPOs; 3. Oxo Complex; 3.1. Oxo complex investigated by UV/vis absorption spectroscopy; 3.2. Oxo complex investigated by CD spectroscopy; 3.3. Oxo complex investigated by resonance Raman spectroscopy; 3.4. Oxo complex of catechol oxidase; 3.5. Oxo complex of tyrosinase; 3.6. Oxo complex of aureusidin synthase; 3.7. Oxo complex of hemocyanin; 4. X-ray Crystallographic Structural Data of PPOs and Hemocyanins; 4.1. Published structures in the protein data bank 4.1.1. Published structures in the PDB of hemocyanins4.1.2. Published structures in the PDB of catechol oxidases; 4.1.3. Published structures in the PDB of tyrosinases; 4.2. Structural differences of tyrosinases and catechol oxidases; 5. Conclusions and Outlook; Acknowledgments; References; Chapter 2: Biophysical Studies of Matrix Metalloproteinase/Triple-Helix Complexes; 1. MMPs and Collagen Hydrolysis; 2. Structures of Full-Length, Collagenolytic MMPs in Solution and in the Solid State; 3. Structural Evaluation of MMP Interactions with Collagen; 4. Mechanism of Collagenolysis 5. Heterogeneity in MMP StructuresAcknowledgment; References; Chapter 3: Catalytic Mechanisms of Metallohydrolases Containing Two Metal Ions; 1. Introduction; 2. Metallo-β-Lactamases, Major Culprits in the Emergence of Antibiotic Resistance; 3. Methionine Aminopeptidase, a Target for Novel Anticancer Drugs; 4. Glycerophosphodiesterase, a Very Promiscuous Potential Bioremediator; 5. PAP, an Alternative Target to Treat Osteoporosis; 6. Conclusions and Outlook: Agmatinase, an Emerging Target for Biotechnological Applications; Acknowledgments; References Chapter 4: Applications of Quantum Mechanical/Molecular Mechanical Methods to the Chemical Insertion Step of DNA and RNA ...1. Introduction; 2. Methods for Describing Reactive Pathways; 3. DNA Polymerase β; 3.1. Abashkin, Erickson, and Burt (2001): A cluster QM calculation at steps along a proposed reaction path; 3.2. Rittenhouse, Apostoluk, Miller, and Straatsma (2003): A cluster QM calculation on the prechemistry complex of Pol β; 3.3. Sawaya et al., 1997); 3.4. Batra et al., 2006); 3.5. Batra et al., 2008) 3.6. Batra et al. (2013): A QM/MM study based on the X-ray crystal structure of the Pol β variant D256E |
Record Nr. | UNINA-9910826143903321 |
Waltham, Massachusetts ; ; San Diego, California : , : Academic Press, , 2014 | ||
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Lo trovi qui: Univ. Federico II | ||
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