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Automation in proteomics and genomics [[electronic resource] ] : an engineering case-based approach / / [edited by] Gil Alterovitz, Roseann Benson, Marco Ramoni
Automation in proteomics and genomics [[electronic resource] ] : an engineering case-based approach / / [edited by] Gil Alterovitz, Roseann Benson, Marco Ramoni
Pubbl/distr/stampa Chichester, West Sussex, U.K. ; ; Hoboken, N.J., : John Wiley, 2009
Descrizione fisica 1 online resource (341 p.)
Disciplina 572/.6
Altri autori (Persone) AlterovitzGil
BensonRoseann
RamoniMarco F
Soggetto topico Proteomics - Automation
Genomics - Automation
Proteomics - Data processing
Genomics - Data processing
ISBN 1-282-12328-9
9786612123283
0-470-74119-8
0-470-74117-1
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto section 1. Fundamentals of molecular and cellular biology -- section 2. Analysis via automation -- section 3. Design via automation -- section 4. Integration.
Record Nr. UNINA-9910146137203321
Chichester, West Sussex, U.K. ; ; Hoboken, N.J., : John Wiley, 2009
Materiale a stampa
Lo trovi qui: Univ. Federico II
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Automation in proteomics and genomics : an engineering case-based approach / / [edited by] Gil Alterovitz, Roseann Benson, Marco Ramoni
Automation in proteomics and genomics : an engineering case-based approach / / [edited by] Gil Alterovitz, Roseann Benson, Marco Ramoni
Edizione [1st ed.]
Pubbl/distr/stampa Chichester, West Sussex, U.K. ; ; Hoboken, N.J., : John Wiley, 2009
Descrizione fisica 1 online resource (341 p.)
Disciplina 572/.6
Altri autori (Persone) AlterovitzGil
BensonRoseann
RamoniMarco F
Soggetto topico Proteomics - Automation
Genomics - Automation
Proteomics - Data processing
Genomics - Data processing
ISBN 1-282-12328-9
9786612123283
0-470-74119-8
0-470-74117-1
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto section 1. Fundamentals of molecular and cellular biology -- section 2. Analysis via automation -- section 3. Design via automation -- section 4. Integration.
Record Nr. UNINA-9910825787603321
Chichester, West Sussex, U.K. ; ; Hoboken, N.J., : John Wiley, 2009
Materiale a stampa
Lo trovi qui: Univ. Federico II
Opac: Controlla la disponibilità qui
Bioinformatics and functional genomics / / Jonathan Pevsner
Bioinformatics and functional genomics / / Jonathan Pevsner
Autore Pevsner Jonathan <1961->
Edizione [Third edition.]
Pubbl/distr/stampa Chichester, England : , : Wiley Blackwell, , 2015
Descrizione fisica 1 online resource (1161 p.)
Disciplina 572.80285
Soggetto topico Bioinformatics
Genomics - Data processing
Molecular biology - Data processing
Soggetto genere / forma Electronic books.
ISBN 1-118-58176-8
1-118-58169-5
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto Access to sequence data and related information -- Pairwise sequence alignment -- Basic local alignment search tool (blast) -- Advanced database searching -- Multiple sequence alignment -- Molecular phylogeny and evolution -- Dna : the eukaryotic chromosome -- Analysis of next-generation sequence data -- Bioinformatic approaches to ribonucleic acid (rna) -- Gene expression : microarray and rna-seq data analysis -- Protein analysis and proteomics -- Protein structure -- Functional genomics -- Genomes across the tree of life -- Completed genomes : viruses -- Completed genomes : bacteria and archaea -- Eukaryotic genomes : fungi -- Eukaryotic genomes : from parasites to primates -- Human genome -- Human disease.
Record Nr. UNINA-9910461465203321
Pevsner Jonathan <1961->  
Chichester, England : , : Wiley Blackwell, , 2015
Materiale a stampa
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Characterization of structural variations in livestock genomes ... annual report
Characterization of structural variations in livestock genomes ... annual report
Pubbl/distr/stampa [Washington, D.C.], : U.S. Dept. of Agriculture, Agricultural Research Service
Descrizione fisica : HTML files
Disciplina 636
Soggetto topico Livestock - Genome mapping - United States - Data processing
DNA - Data processing
Genomics - Data processing
ADN - Informatique
Génomique - Informatique
Soggetto genere / forma Periodicals.
ISSN 2378-0134
Formato Materiale a stampa
Livello bibliografico Periodico
Lingua di pubblicazione eng
Record Nr. UNINA-9910703115903321
[Washington, D.C.], : U.S. Dept. of Agriculture, Agricultural Research Service
Materiale a stampa
Lo trovi qui: Univ. Federico II
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Computational text analysis for functional genomics and bioinformatics [[electronic resource] /] / Soumya Raychaudhuri
Computational text analysis for functional genomics and bioinformatics [[electronic resource] /] / Soumya Raychaudhuri
Autore Raychaudhuri Soumya
Pubbl/distr/stampa Oxford, : Oxford University Press, 2006
Descrizione fisica 1 online resource (325 p.)
Disciplina 572.86
Collana Oxford scholarship online
Soggetto topico Bioinformatics
Computational biology
Genomics - Data processing
Soggetto genere / forma Electronic books.
ISBN 0-19-191670-6
1-280-96507-X
9786610965076
0-19-151377-6
1-4294-7040-2
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto Contents; List of Figures; List of Plates; List of Tables; 1 An introduction to text analysis in genomics; 2 Functional genomics; 3 Textual profiles of genes; 4 Using text in sequence analysis; 5 Text-based analysis of a single series of gene expression measurements; 6 Analyzing groups of genes; 7 Analyzing large gene expression data sets; 8 Using text classification for gene function annotation; 9 Finding gene names; 10 Protein interaction networks; 11 Conclusion; Index
Record Nr. UNINA-9910450887303321
Raychaudhuri Soumya  
Oxford, : Oxford University Press, 2006
Materiale a stampa
Lo trovi qui: Univ. Federico II
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Computational text analysis for functional genomics and bioinformatics [[electronic resource] /] / Soumya Raychaudhuri
Computational text analysis for functional genomics and bioinformatics [[electronic resource] /] / Soumya Raychaudhuri
Autore Raychaudhuri Soumya
Pubbl/distr/stampa Oxford, : Oxford University Press, 2006
Descrizione fisica 1 online resource (325 p.)
Disciplina 572.86
Collana Oxford scholarship online
Soggetto topico Bioinformatics
Computational biology
Genomics - Data processing
ISBN 0-19-191670-6
1-280-96507-X
9786610965076
0-19-151377-6
1-4294-7040-2
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto Contents; List of Figures; List of Plates; List of Tables; 1 An introduction to text analysis in genomics; 2 Functional genomics; 3 Textual profiles of genes; 4 Using text in sequence analysis; 5 Text-based analysis of a single series of gene expression measurements; 6 Analyzing groups of genes; 7 Analyzing large gene expression data sets; 8 Using text classification for gene function annotation; 9 Finding gene names; 10 Protein interaction networks; 11 Conclusion; Index
Record Nr. UNINA-9910784810403321
Raychaudhuri Soumya  
Oxford, : Oxford University Press, 2006
Materiale a stampa
Lo trovi qui: Univ. Federico II
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Computational text analysis for functional genomics and bioinformatics / / Soumya Raychaudhuri
Computational text analysis for functional genomics and bioinformatics / / Soumya Raychaudhuri
Autore Raychaudhuri Soumya
Edizione [1st ed.]
Pubbl/distr/stampa Oxford, : Oxford University Press, 2006
Descrizione fisica 1 online resource (325 p.)
Disciplina 572.86
Collana Oxford scholarship online
Soggetto topico Bioinformatics
Computational biology
Genomics - Data processing
ISBN 0-19-191670-6
1-280-96507-X
9786610965076
0-19-151377-6
1-4294-7040-2
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto Contents; List of Figures; List of Plates; List of Tables; 1 An introduction to text analysis in genomics; 2 Functional genomics; 3 Textual profiles of genes; 4 Using text in sequence analysis; 5 Text-based analysis of a single series of gene expression measurements; 6 Analyzing groups of genes; 7 Analyzing large gene expression data sets; 8 Using text classification for gene function annotation; 9 Finding gene names; 10 Protein interaction networks; 11 Conclusion; Index
Record Nr. UNINA-9910819628203321
Raychaudhuri Soumya  
Oxford, : Oxford University Press, 2006
Materiale a stampa
Lo trovi qui: Univ. Federico II
Opac: Controlla la disponibilità qui
Data analysis and visualization in genomics and proteomics [[electronic resource] /] / editors, Francisco Azuaje and Joaquín Dopazo
Data analysis and visualization in genomics and proteomics [[electronic resource] /] / editors, Francisco Azuaje and Joaquín Dopazo
Pubbl/distr/stampa Hoboken, NJ, : John Wiley, c2005
Descrizione fisica 1 online resource (285 p.)
Disciplina 372.860285
572.8/6
Altri autori (Persone) AzuajeFrancisco
DopazoJoaquín
Soggetto topico Genomics - Data processing
Proteomics - Data processing
Data mining
Soggetto genere / forma Electronic books.
ISBN 1-280-27600-2
9786610276004
0-470-09441-9
0-470-09440-0
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto Data Analysis and Visualization in Genomics and Proteomics; Contents; Preface; List of Contributors; SECTION I INTRODUCTION - DATA DIVERSITY AND INTEGRATION; 1 Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges; 1.1 Data Analysis and Visualization: An Integrative Approach; 1.2 Critical Design and Implementation Factors; 1.3 Overview of Contributions; References; 2 Biological Databases: Infrastructure, Content and Integration; 2.1 Introduction; 2.2 Data Integration; 2.3 Review of Molecular Biology Databases; 2.4 Conclusion; References
3 Data and Predictive Model Integration: an Overview of Key Concepts, Problems and Solutions3.1 Integrative Data Analysis and Visualization: Motivation and Approaches; 3.2 Integrating Informational Views and Complexity for Understanding Function; 3.3 Integrating Data Analysis Techniques for Supporting Functional Analysis; 3.4 Final Remarks; References; SECTION II INTEGRATIVE DATA MINING AND VISUALIZATION - EMPHASIS ON COMBINATION OF MULTIPLE DATA TYPES; 4 Applications of Text Mining in Molecular Biology, from Name Recognition to Protein Interaction Maps; 4.1 Introduction
4.2 Introduction to Text Mining and NLP4.3 Databases and Resources for Biomedical Text Mining; 4.4 Text Mining and Protein-Protein Interactions; 4.5 Other Text-Mining Applications in Genomics; 4.6 The Future of NLP in Biomedicine; Acknowledgements; References; 5 Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis; 5.1 Introduction; 5.2 Genomic Features in Protein Interaction Predictions; 5.3 Machine Learning on Protein-Protein Interactions; 5.4 The Missing Value Problem; 5.5 Network Analysis of Protein Interactions; 5.6 Discussion
References6 Integration of Genomic and Phenotypic Data; 6.1 Phenotype; 6.2 Forward Genetics and QTL Analysis; 6.3 Reverse Genetics; 6.4 Prediction of Phenotype from Other Sources of Data; 6.5 Integrating Phenotype Data with Systems Biology; 6.6 Integration of Phenotype Data in Databases; 6.7 Conclusions; References; 7 Ontologies and Functional Genomics; 7.1 Information Mining in Genome-Wide Functional Analysis; 7.2 Sources of Information: Free Text Versus Curated Repositories; 7.3 Bio-Ontologies and the Gene Ontology in Functional Genomics
7.4 Using GO to Translate the Results of Functional Genomic Experiments into Biological Knowledge7.5 Statistical Approaches to Test Significant Biological Differences; 7.6 Using FatiGO to Find Significant Functional Associations in Clusters of Genes; 7.7 Other Tools; 7.8 Examples of Functional Analysis of Clusters of Genes; 7.9 Future Prospects; References; 8 The C. elegans Interactome: its Generation and Visualization; 8.1 Introduction; 8.2 The ORFeome: the first step toward the interactome of C. elegans
8.3 Large-Scale High-Throughput Yeast Two-Hybrid Screens to Map the C. elegans Protein-Protein Interaction (Interactome) Network: Technical Aspects
Record Nr. UNINA-9910143713103321
Hoboken, NJ, : John Wiley, c2005
Materiale a stampa
Lo trovi qui: Univ. Federico II
Opac: Controlla la disponibilità qui
Data analysis and visualization in genomics and proteomics [[electronic resource] /] / editors, Francisco Azuaje and Joaquín Dopazo
Data analysis and visualization in genomics and proteomics [[electronic resource] /] / editors, Francisco Azuaje and Joaquín Dopazo
Pubbl/distr/stampa Hoboken, NJ, : John Wiley, c2005
Descrizione fisica 1 online resource (285 p.)
Disciplina 372.860285
572.8/6
Altri autori (Persone) AzuajeFrancisco
DopazoJoaquín
Soggetto topico Genomics - Data processing
Proteomics - Data processing
Data mining
ISBN 1-280-27600-2
9786610276004
0-470-09441-9
0-470-09440-0
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto Data Analysis and Visualization in Genomics and Proteomics; Contents; Preface; List of Contributors; SECTION I INTRODUCTION - DATA DIVERSITY AND INTEGRATION; 1 Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges; 1.1 Data Analysis and Visualization: An Integrative Approach; 1.2 Critical Design and Implementation Factors; 1.3 Overview of Contributions; References; 2 Biological Databases: Infrastructure, Content and Integration; 2.1 Introduction; 2.2 Data Integration; 2.3 Review of Molecular Biology Databases; 2.4 Conclusion; References
3 Data and Predictive Model Integration: an Overview of Key Concepts, Problems and Solutions3.1 Integrative Data Analysis and Visualization: Motivation and Approaches; 3.2 Integrating Informational Views and Complexity for Understanding Function; 3.3 Integrating Data Analysis Techniques for Supporting Functional Analysis; 3.4 Final Remarks; References; SECTION II INTEGRATIVE DATA MINING AND VISUALIZATION - EMPHASIS ON COMBINATION OF MULTIPLE DATA TYPES; 4 Applications of Text Mining in Molecular Biology, from Name Recognition to Protein Interaction Maps; 4.1 Introduction
4.2 Introduction to Text Mining and NLP4.3 Databases and Resources for Biomedical Text Mining; 4.4 Text Mining and Protein-Protein Interactions; 4.5 Other Text-Mining Applications in Genomics; 4.6 The Future of NLP in Biomedicine; Acknowledgements; References; 5 Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis; 5.1 Introduction; 5.2 Genomic Features in Protein Interaction Predictions; 5.3 Machine Learning on Protein-Protein Interactions; 5.4 The Missing Value Problem; 5.5 Network Analysis of Protein Interactions; 5.6 Discussion
References6 Integration of Genomic and Phenotypic Data; 6.1 Phenotype; 6.2 Forward Genetics and QTL Analysis; 6.3 Reverse Genetics; 6.4 Prediction of Phenotype from Other Sources of Data; 6.5 Integrating Phenotype Data with Systems Biology; 6.6 Integration of Phenotype Data in Databases; 6.7 Conclusions; References; 7 Ontologies and Functional Genomics; 7.1 Information Mining in Genome-Wide Functional Analysis; 7.2 Sources of Information: Free Text Versus Curated Repositories; 7.3 Bio-Ontologies and the Gene Ontology in Functional Genomics
7.4 Using GO to Translate the Results of Functional Genomic Experiments into Biological Knowledge7.5 Statistical Approaches to Test Significant Biological Differences; 7.6 Using FatiGO to Find Significant Functional Associations in Clusters of Genes; 7.7 Other Tools; 7.8 Examples of Functional Analysis of Clusters of Genes; 7.9 Future Prospects; References; 8 The C. elegans Interactome: its Generation and Visualization; 8.1 Introduction; 8.2 The ORFeome: the first step toward the interactome of C. elegans
8.3 Large-Scale High-Throughput Yeast Two-Hybrid Screens to Map the C. elegans Protein-Protein Interaction (Interactome) Network: Technical Aspects
Record Nr. UNINA-9910830512303321
Hoboken, NJ, : John Wiley, c2005
Materiale a stampa
Lo trovi qui: Univ. Federico II
Opac: Controlla la disponibilità qui
Data analysis and visualization in genomics and proteomics / / editors, Francisco Azuaje and Joaquin Dopazo
Data analysis and visualization in genomics and proteomics / / editors, Francisco Azuaje and Joaquin Dopazo
Pubbl/distr/stampa Hoboken, NJ, : John Wiley, c2005
Descrizione fisica 1 online resource (285 p.)
Disciplina 572.8/6
Altri autori (Persone) AzuajeFrancisco
DopazoJoaquin
Soggetto topico Genomics - Data processing
Proteomics - Data processing
Data mining
ISBN 1-280-27600-2
9786610276004
0-470-09441-9
0-470-09440-0
Formato Materiale a stampa
Livello bibliografico Monografia
Lingua di pubblicazione eng
Nota di contenuto Data Analysis and Visualization in Genomics and Proteomics; Contents; Preface; List of Contributors; SECTION I INTRODUCTION - DATA DIVERSITY AND INTEGRATION; 1 Integrative Data Analysis and Visualization: Introduction to Critical Problems, Goals and Challenges; 1.1 Data Analysis and Visualization: An Integrative Approach; 1.2 Critical Design and Implementation Factors; 1.3 Overview of Contributions; References; 2 Biological Databases: Infrastructure, Content and Integration; 2.1 Introduction; 2.2 Data Integration; 2.3 Review of Molecular Biology Databases; 2.4 Conclusion; References
3 Data and Predictive Model Integration: an Overview of Key Concepts, Problems and Solutions3.1 Integrative Data Analysis and Visualization: Motivation and Approaches; 3.2 Integrating Informational Views and Complexity for Understanding Function; 3.3 Integrating Data Analysis Techniques for Supporting Functional Analysis; 3.4 Final Remarks; References; SECTION II INTEGRATIVE DATA MINING AND VISUALIZATION - EMPHASIS ON COMBINATION OF MULTIPLE DATA TYPES; 4 Applications of Text Mining in Molecular Biology, from Name Recognition to Protein Interaction Maps; 4.1 Introduction
4.2 Introduction to Text Mining and NLP4.3 Databases and Resources for Biomedical Text Mining; 4.4 Text Mining and Protein-Protein Interactions; 4.5 Other Text-Mining Applications in Genomics; 4.6 The Future of NLP in Biomedicine; Acknowledgements; References; 5 Protein Interaction Prediction by Integrating Genomic Features and Protein Interaction Network Analysis; 5.1 Introduction; 5.2 Genomic Features in Protein Interaction Predictions; 5.3 Machine Learning on Protein-Protein Interactions; 5.4 The Missing Value Problem; 5.5 Network Analysis of Protein Interactions; 5.6 Discussion
References6 Integration of Genomic and Phenotypic Data; 6.1 Phenotype; 6.2 Forward Genetics and QTL Analysis; 6.3 Reverse Genetics; 6.4 Prediction of Phenotype from Other Sources of Data; 6.5 Integrating Phenotype Data with Systems Biology; 6.6 Integration of Phenotype Data in Databases; 6.7 Conclusions; References; 7 Ontologies and Functional Genomics; 7.1 Information Mining in Genome-Wide Functional Analysis; 7.2 Sources of Information: Free Text Versus Curated Repositories; 7.3 Bio-Ontologies and the Gene Ontology in Functional Genomics
7.4 Using GO to Translate the Results of Functional Genomic Experiments into Biological Knowledge7.5 Statistical Approaches to Test Significant Biological Differences; 7.6 Using FatiGO to Find Significant Functional Associations in Clusters of Genes; 7.7 Other Tools; 7.8 Examples of Functional Analysis of Clusters of Genes; 7.9 Future Prospects; References; 8 The C. elegans Interactome: its Generation and Visualization; 8.1 Introduction; 8.2 The ORFeome: the first step toward the interactome of C. elegans
8.3 Large-Scale High-Throughput Yeast Two-Hybrid Screens to Map the C. elegans Protein-Protein Interaction (Interactome) Network: Technical Aspects
Record Nr. UNINA-9910877585803321
Hoboken, NJ, : John Wiley, c2005
Materiale a stampa
Lo trovi qui: Univ. Federico II
Opac: Controlla la disponibilità qui