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'In silico' simulation of biological processes [[electronic resource] /] / [editors, Gregory Bock and Jamie A. Goode]
| 'In silico' simulation of biological processes [[electronic resource] /] / [editors, Gregory Bock and Jamie A. Goode] |
| Pubbl/distr/stampa | Chichester, West Sussex, UK ; ; Hoboken, NJ, : John Wiley, 2002 |
| Descrizione fisica | 1 online resource (272 p.) |
| Disciplina |
570/.1/13
660.6 |
| Altri autori (Persone) |
BockGregory
GoodeJamie |
| Collana | Novartis Foundation symposium |
| Soggetto topico |
Biology - Computer simulation
Bioinformatics |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-280-27080-2
9780470857900 9786610270804 0-470-66805-9 0-470-85790-0 0-470-85789-7 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
'IN SILICO' SIMULATION OF BIOLOGICAL PROCESSES; Contents; Participants; Chair's introduction; Integrative biological modelling in silico; Discussion; Advances in computing, and their impact on scientific computing; Discussion; From physics to phenomenology. Levels of description and levels of selection; Making sense of complex phenomena in biology; Discussion; On ontologies for biologists: the Gene Ontology-untangling the web; Discussion; General discussion I; Model validation; The KEGG database; Discussion; Bioinformatics of cellular signalling; Discussion; General discussion II
Standards of communicationSemantics and intercommunicability; Imaging-based integrative models of the heart: closing the loop between experiment and simulation; Discussion; General discussion III; Modelling Ca(2+) signalling; The Virtual Cell project; Discussion; Modelling the bacterial chemotaxis receptor complex; The heart cell in silico: successes, failures and prospects; Discussion; Discussion; General discussion IV; The IUPS Physiome Project; Discussion; Using in silico biology to facilitate drug development; Discussion; Final discussion; Is there a theoretical biology? Index of contributorsSubject index |
| Record Nr. | UNINA-9910143231003321 |
| Chichester, West Sussex, UK ; ; Hoboken, NJ, : John Wiley, 2002 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
'In silico' simulation of biological processes [[electronic resource] /] / [editors, Gregory Bock and Jamie A. Goode]
| 'In silico' simulation of biological processes [[electronic resource] /] / [editors, Gregory Bock and Jamie A. Goode] |
| Pubbl/distr/stampa | Chichester, West Sussex, UK ; ; Hoboken, NJ, : John Wiley, 2002 |
| Descrizione fisica | 1 online resource (272 p.) |
| Disciplina |
570/.1/13
660.6 |
| Altri autori (Persone) |
BockGregory
GoodeJamie |
| Collana | Novartis Foundation symposium |
| Soggetto topico |
Biology - Computer simulation
Bioinformatics |
| ISBN |
1-280-27080-2
9780470857900 9786610270804 0-470-66805-9 0-470-85790-0 0-470-85789-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
'IN SILICO' SIMULATION OF BIOLOGICAL PROCESSES; Contents; Participants; Chair's introduction; Integrative biological modelling in silico; Discussion; Advances in computing, and their impact on scientific computing; Discussion; From physics to phenomenology. Levels of description and levels of selection; Making sense of complex phenomena in biology; Discussion; On ontologies for biologists: the Gene Ontology-untangling the web; Discussion; General discussion I; Model validation; The KEGG database; Discussion; Bioinformatics of cellular signalling; Discussion; General discussion II
Standards of communicationSemantics and intercommunicability; Imaging-based integrative models of the heart: closing the loop between experiment and simulation; Discussion; General discussion III; Modelling Ca(2+) signalling; The Virtual Cell project; Discussion; Modelling the bacterial chemotaxis receptor complex; The heart cell in silico: successes, failures and prospects; Discussion; Discussion; General discussion IV; The IUPS Physiome Project; Discussion; Using in silico biology to facilitate drug development; Discussion; Final discussion; Is there a theoretical biology? Index of contributorsSubject index |
| Record Nr. | UNINA-9910830290003321 |
| Chichester, West Sussex, UK ; ; Hoboken, NJ, : John Wiley, 2002 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
'In silico' simulation of biological processes / / [editors, Gregory Bock and Jamie A. Goode]
| 'In silico' simulation of biological processes / / [editors, Gregory Bock and Jamie A. Goode] |
| Pubbl/distr/stampa | Chichester, West Sussex, UK ; ; Hoboken, NJ, : John Wiley, 2002 |
| Descrizione fisica | 1 online resource (272 p.) |
| Disciplina |
570/.1/13
660.6 |
| Altri autori (Persone) |
BockGregory
GoodeJamie |
| Collana | Novartis Foundation symposium |
| Soggetto topico |
Biology - Computer simulation
Bioinformatics |
| ISBN |
1-280-27080-2
9780470857900 9786610270804 0-470-66805-9 0-470-85790-0 0-470-85789-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
'IN SILICO' SIMULATION OF BIOLOGICAL PROCESSES; Contents; Participants; Chair's introduction; Integrative biological modelling in silico; Discussion; Advances in computing, and their impact on scientific computing; Discussion; From physics to phenomenology. Levels of description and levels of selection; Making sense of complex phenomena in biology; Discussion; On ontologies for biologists: the Gene Ontology-untangling the web; Discussion; General discussion I; Model validation; The KEGG database; Discussion; Bioinformatics of cellular signalling; Discussion; General discussion II
Standards of communicationSemantics and intercommunicability; Imaging-based integrative models of the heart: closing the loop between experiment and simulation; Discussion; General discussion III; Modelling Ca(2+) signalling; The Virtual Cell project; Discussion; Modelling the bacterial chemotaxis receptor complex; The heart cell in silico: successes, failures and prospects; Discussion; Discussion; General discussion IV; The IUPS Physiome Project; Discussion; Using in silico biology to facilitate drug development; Discussion; Final discussion; Is there a theoretical biology? Index of contributorsSubject index |
| Record Nr. | UNINA-9910876751503321 |
| Chichester, West Sussex, UK ; ; Hoboken, NJ, : John Wiley, 2002 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Complex biological systems : adaptation and tolerance to extreme environments / / edited by Karl Y. Biel, Vladislav G. Soukhovolsky, Irina R. Fomina
| Complex biological systems : adaptation and tolerance to extreme environments / / edited by Karl Y. Biel, Vladislav G. Soukhovolsky, Irina R. Fomina |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Scriverner Publishing : , : Wiley, , 2018 |
| Descrizione fisica | 1 online resource (606 pages) |
| Disciplina | 610.113 |
| Collana | THEi Wiley ebooks. |
| Soggetto topico |
Medicine - Computer simulation
Biology - Computer simulation |
| ISBN |
1-119-51033-3
1-119-51039-2 1-119-51037-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910555147403321 |
| Hoboken, New Jersey : , : Scriverner Publishing : , : Wiley, , 2018 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Complex biological systems : adaptation and tolerance to extreme environments / / edited by Karl Y. Biel, Vladislav G. Soukhovolsky, Irina R. Fomina
| Complex biological systems : adaptation and tolerance to extreme environments / / edited by Karl Y. Biel, Vladislav G. Soukhovolsky, Irina R. Fomina |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Scriverner Publishing : , : Wiley, , 2018 |
| Descrizione fisica | 1 online resource (606 pages) |
| Disciplina | 610.113 |
| Collana | THEi Wiley ebooks. |
| Soggetto topico |
Medicine - Computer simulation
Biology - Computer simulation |
| ISBN |
1-119-51033-3
1-119-51039-2 1-119-51037-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910812890403321 |
| Hoboken, New Jersey : , : Scriverner Publishing : , : Wiley, , 2018 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Mathematical Modelling and Computing in Physics, Chemistry and Biology : Fundamentals and Applications / / Zdzislaw Trzaska
| Mathematical Modelling and Computing in Physics, Chemistry and Biology : Fundamentals and Applications / / Zdzislaw Trzaska |
| Autore | Trzaska Zdzisław |
| Edizione | [First edition.] |
| Pubbl/distr/stampa | Cham, Switzerland : , : Springer, Springer Nature Switzerland AG, , [2023] |
| Descrizione fisica | 1 online resource (320 pages) |
| Disciplina | 574.0113 |
| Collana | Studies in Systems, Decision and Control Series |
| Soggetto topico |
Biology - Computer simulation
Biology - Mathematical models Chemistry - Computer simulation Chemistry - Mathematical models |
| ISBN | 3-031-39985-4 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Intro -- Contents -- 1 Basic Characteristics of Dynamical Systems -- 1.1 Cornerstone -- 1.2 Concise Characterization of Complex Dynamical Systems -- 1.3 Relevance and Emergence of Natural Systems -- 1.4 Unusual Behavior of Complex Nonlinear Dynamical Systems -- 1.5 Entropy of Complex Processes in Dynamical Systems -- 1.6 Instantaneous States of Dynamical Systems -- References -- 2 Basic Ingredients of Nonlinear Systems Dynamics -- 2.1 Introduction -- 2.2 Nonlinear Phenomena and Nonlinear Equations -- 2.2.1 Preliminaries -- 2.2.2 Paradigmatic Nonlinear Models -- 2.2.3 Nonlinear Oscillators Solvable in Elementary Functions -- 2.3 Models of Complex Nonlinear Dynamic Systems -- 2.3.1 Basic Forms of Systems Oscillations -- 2.3.2 Systems Under Periodic Pulsed Excitation -- 2.3.3 Regular Periodic Pulses in Linear Systems -- 2.3.4 Oscillators Under the Periodic Impulsive Loading -- 2.3.5 Periodic Impulses with a Temporal 'Dipole' Shift -- 2.3.6 Fractional Order Differential Models -- 2.3.7 Artificial Intelligence Models -- 2.4 Mixed-Mode Oscillations -- 2.5 Stability and Bifurcation of Dynamic States -- 2.6 Chaotic Oscillations -- References -- 3 Oscillations in Physical Systems -- 3.1 Lorenz System and Its Properties -- 3.2 Logistic Equation and Its Applications -- 3.3 Predator-Prey Systems -- 3.4 Systems with the Double Scroll Attractors -- 3.5 Fractal Systems -- 3.6 Applications of Van der Pol Equation -- 3.7 The Rössler Attractor -- 3.8 Dynamic Analysis of the Nonlinear Energy Harvesting System -- 3.9 Duffing's Forced Oscillator -- References -- 4 Oscillatory Chemical Systems -- 4.1 Preliminary -- 4.2 Oscillations in Chemical Systems -- 4.3 Autocatalysis, Activation and Inhibition -- 4.4 Enzyme Kinetics -- 4.5 BZ Oscillating Reactions -- 4.6 Limit Cycle Oscillations in the BZ Reaction -- 4.7 Numerical Simulations of Kinetic Bistability of Reactions.
4.8 Mathematical Modeling of Electrochemical Reactors -- 4.9 MMOs in Electrochemical Reactors -- References -- 5 Oscillations in Biological Processes -- 5.1 Motivation, Brief History and Background -- 5.2 Feedback Control Mechanisms -- 5.3 The Hodgkin-Huxley Neuron -- 5.3.1 Basic Mathematical Model -- 5.3.2 Periodic Neuron Firing -- 5.4 Reduced Model of a Single Neuron Activity -- 5.5 Nonlinear Human Cardiovascular System -- 5.5.1 Concise Characterization of a Cardiovascular System -- 5.5.2 Thermodynamic Model of the Cardiovascular System Dynamics -- 5.5.3 MMOs as an Indicator of Illness in the Cardiovascular System -- References -- 6 Energy Flow Analysis of Nonlinear Dynamical Systems -- 6.1 Introduction and Short Historical References -- 6.2 New Standards for the Energy Avenue in Non-sinusoidal States -- 6.2.1 Preliminary -- 6.2.2 Hysteresis Loops on Energy Phase Plane -- 6.2.3 Quantitative Measures of the Energy Hysteresis Loop -- 6.2.4 Estimates for One-Period Energy Loops -- 6.2.5 Analysis for Energy Aspects in Dynamical Systems with Switches -- 6.3 The Energy Approach to Electrochemical Corrosion Studies of Nano-copper Coatings -- 6.3.1 Introduction -- 6.3.2 The One-Period Energy Approach -- 6.3.3 Experiments -- 6.3.4 Results and Discussion -- 6.4 Effective Harvesting of Braking Energy in Electric Cars -- 6.4.1 Introduction -- 6.4.2 Energy Losses in Sub-systems of Electric Cars -- 6.4.3 Energy Regeneration in Sub-systems of Electric Cars -- 6.4.4 Modification of the Car Brake Sub-system -- 6.4.5 Regenerative Damping -- 6.4.6 Supercapacitor Characterization -- 6.4.7 Simulations -- 6.4.8 Summary and Conclusions -- 6.5 Electromechanical System for Charging Batteries of Electric Cars -- 6.5.1 Introduction -- 6.5.2 Principle of Batteries Charging with the Faraday Disk Generator -- 6.5.3 Battery Property and Modelling. 6.5.4 Electro-magnetic-mechanical Model of Faraday Disk Generators -- 6.5.5 Structure of the Charging System -- 6.5.6 State-Space Equations -- 6.5.7 Computer Simulations -- 6.5.8 Discussion and Summary -- 6.6 Modeling of Energy Processes in Wheel-Rail Contacts Operating Under Influence of Periodic Discontinuous Forces -- 6.6.1 Introduction -- 6.6.2 The Problem Description -- 6.6.3 Dynamic Model of Wheel-Rail Contacts -- 6.6.4 Exact Periodic Solutions -- 6.6.5 Application of One-Period Energy Approach -- 6.6.6 Sleeper Nonlinear Characteristics -- 6.6.7 Discussion and Summary -- References -- 7 Artificial Intelligence in the Service of Dynamical Systems Studies -- 7.1 Background of AI Modeling -- 7.2 Common Types of AI Algorithms -- 7.3 Artificial Neural Network -- 7.3.1 Preliminary -- 7.3.2 Architectures of Artificial Neural Networks -- 7.3.3 Hopfield Artificial Neural Network -- 7.3.4 Equilibrium States in the Hopfield Network -- 7.4 Learning Neural Networks -- 7.5 Fuzzy Logic Models -- 7.5.1 Concise Overview -- 7.5.2 Fuzzy Systems -- 7.5.3 Building Fuzzy Models -- 7.5.4 Defuzzification -- 7.6 Real-Life Artificial Intelligence Applications -- References. |
| Record Nr. | UNINA-9910799228203321 |
Trzaska Zdzisław
|
||
| Cham, Switzerland : , : Springer, Springer Nature Switzerland AG, , [2023] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Pacific Symposium on Biocomputing 2007 [[electronic resource] ] : Maui, Hawaii, 3-7 January 2007 / / edited by Russ B. Altman ... [et al.]
| Pacific Symposium on Biocomputing 2007 [[electronic resource] ] : Maui, Hawaii, 3-7 January 2007 / / edited by Russ B. Altman ... [et al.] |
| Pubbl/distr/stampa | Hackensack, N.J., : World Scientific, c2007 |
| Descrizione fisica | xvi, 507 p. : ill |
| Disciplina | 570.15 |
| Altri autori (Persone) | AltmanRuss |
| Soggetto topico |
Biology - Computer simulation
Biology - Mathematical models Molecular biology - Computer simulation Molecular biology - Mathematical models |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-281-91203-4
9786611912031 981-277-243-X |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Preface -- Protein interactions and diseases. Session introduction / Maricel Kann ... [et al.]. Graph kernels for disease outcome prediction from protein-protein interaction networks / Karsten M. Borgwardt ... [et al.]. Chalkboard: ontology-based pathway modeling and qualitative inference of disease mechanisms / Daniel L. Cook, Jesse C. Wiley, and John H. Gennari. Mining gene-disease relationships from biomedical literature weighting protein-protein interactions and connectivity measures / Graciela Gonzalez ... [et al.]. Predicting structure and dynamics of loosely-ordered protein complexes: influenza hemagglutinin fusion peptide / Peter M. Kasson and Vijay S. Pande. Protein interactions and disease phenotypes in the ABC transporter superfamily / Libusha Kelly, Rachel Karchin, and Andrej Sali. LTHREADER: prediction of Ligand-receptor interactions using localized threading / Vinay Pulim, Jadwiga Bienkowska, and Bonnie Berger. Discovery of protein interaction networks shared by diseases / Lee Sam ... [et al.]. An iterative algorithm for metabolic network-based drug target identification / Padmavati Sridhar, Tamer Kahveci, and Sanjay Ranka. Transcriptional interactions during smallpox infection and identification of early infection biomarkers / Willy A. Valdivia-Granda, Maricel G. Kann, and Jose Malaga -- Computational approaches to metabolomics. Session introduction / David S. Wishart and Russell Greiner. Leveraging latent information in NMR spectra for robust predictive models / David Chang, Aalim Weljie, and Jack Newton. Bioinformatics data profiling tools: a prelude to metabolic profiling / Natarajan Ganesan, Bala Kalyanasundaram, and Mahe Velauthapllai. Comparative QSAR analysis of bacterial, fungal, plant and human metabolites / Emre Karakoc, S. Cenk Sahinalp, and Artem Cherkasov. BioSpider: a web server for automating metabolome annotations / Craig Knox ... [et al.]. New bioinformatics resources for metabolomics / John L. Markley ... [et al.]. Setup X - a public study design database for metabolomic projects / Martin Scholz and Oliver Fiehn. Comparative metabolomics of breast cancer / Chen Yang ... [et al.]. Metabolic flux profiling of reaction modules in liver drug transformation / Jeongah Yoon and Kyongbum Lee -- New frontiers in biomedical text mining. Session introduction / Pierre Zweigenbaum ... [et al.]. Extracting semantic predications from medline citations for pharmacogenomics / Caroline B. Ahlers ... [et al.]. Annotating genes using textual patterns / Ali Cakmak and Gultekin Ozsoyoglu. A fault model for ontology mapping, alignment, and linking systems / Helen L. Johnson, K. Bretonnel Cohen, and Lawrence Hunter. Integrating natural language processing with flybase curation / Nikiforos Karamanis Y. ... [et al.]. A stacked graphical model for associating sub-images with sub-captions / Zhenzhen Kou, William W. Cohen, and Robert F. Murphy. GeneRIF quality assurance as summary revision / Zhiyong Lu, K. Bretonnel Cohen, and Lawrence Hunter. Evaluating the automatic mapping of human gene and protein mentions to unique identifiers / Alexander A. Morgan ... [et al.]. Multiple approaches to fine-grained indexing of the biomedical literature / Aurelie Neveol ... [et al.]. Mining patents using molecular similarity search / James Rhodes ... [et al.]. Discovering implicit associations between genes and hereditary diseases / Kazuhiro Seki and Javed Mostafa. A cognitive evaluation of four online search engines for answering definitional questions posed by physicians / Hong Yu and David Kaufman -- Biodiversity informatics: managing knowledge beyond humans and model organisms. Session introduction / Indra Neil Sarkar. Biomediator data integration and inference for functional annotation of anonymous sequences / Eithon Cadag ... [et al.]. Absent sequences: nullomers and primes / Greg Hampikian and Tim Andersen. An anatomical ontology for amphibians / Anne M. Maglia ... [et al.]. Recommending pathway genes using a compendium of clustering solutions / David M. Ng, Marcos H. Woehrmann, and Joshua M. Stuart. Semi-automated XML markup of biosystematic legacy literature with the Goldengate editor / Guido Sautter, Klemens B�ohm, and Donat Agosti -- Computational proteomics: high-throughput analysis for systems biology. Session introduction / William Cannon and Bobbie-Jo Webb-Robertson. Advancement in protein inference from shotgun proteomics using peptide detectability / Pedro Alves ... [et al.]. Mining tandem mass spectral data to develop a more accurate mass error model for peptide identification / Yan Fu ... [et al.]. Assessing and combining reliability of protein interaction sources / Sonia Leach ... [et al.]. Probabilistic modeling of systematic errors in two-hybrid experiments / David Sontag, Rohit Singh, and Bonnie Berger. Prospective exploration of biochemical tissue composition via imaging mass spectrometry guided by principal component analysis / Raf Van de Plas ... [et al.] -- DNA-protein interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk ... [et al.]. Discovering motifs with transcription factor domain knowledge / Henry C. M. Leung, Francis Y. L. Chin, and Bethany M. Y. Chan. Ab initio prediction of transcription factor binding sites / L. Angela Liu and Joel S. Bader. Comparative pathway annotation with protein-DNA interaction and operon information via graph tree decomposition / Jizhen Zhao, Dongsheng Che, and Liming Cai. |
| Record Nr. | UNINA-9910451938803321 |
| Hackensack, N.J., : World Scientific, c2007 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Pacific Symposium on Biocomputing 2007 [[electronic resource] ] : Maui, Hawaii, 3-7 January 2007 / / edited by Russ B. Altman ... [et al.]
| Pacific Symposium on Biocomputing 2007 [[electronic resource] ] : Maui, Hawaii, 3-7 January 2007 / / edited by Russ B. Altman ... [et al.] |
| Pubbl/distr/stampa | Hackensack, N.J., : World Scientific, c2007 |
| Descrizione fisica | xvi, 507 p. : ill |
| Disciplina | 570.15 |
| Altri autori (Persone) | AltmanRuss |
| Soggetto topico |
Biology - Computer simulation
Biology - Mathematical models Molecular biology - Computer simulation Molecular biology - Mathematical models |
| ISBN |
1-281-91203-4
9786611912031 981-277-243-X |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Preface -- Protein interactions and diseases. Session introduction / Maricel Kann ... [et al.]. Graph kernels for disease outcome prediction from protein-protein interaction networks / Karsten M. Borgwardt ... [et al.]. Chalkboard: ontology-based pathway modeling and qualitative inference of disease mechanisms / Daniel L. Cook, Jesse C. Wiley, and John H. Gennari. Mining gene-disease relationships from biomedical literature weighting protein-protein interactions and connectivity measures / Graciela Gonzalez ... [et al.]. Predicting structure and dynamics of loosely-ordered protein complexes: influenza hemagglutinin fusion peptide / Peter M. Kasson and Vijay S. Pande. Protein interactions and disease phenotypes in the ABC transporter superfamily / Libusha Kelly, Rachel Karchin, and Andrej Sali. LTHREADER: prediction of Ligand-receptor interactions using localized threading / Vinay Pulim, Jadwiga Bienkowska, and Bonnie Berger. Discovery of protein interaction networks shared by diseases / Lee Sam ... [et al.]. An iterative algorithm for metabolic network-based drug target identification / Padmavati Sridhar, Tamer Kahveci, and Sanjay Ranka. Transcriptional interactions during smallpox infection and identification of early infection biomarkers / Willy A. Valdivia-Granda, Maricel G. Kann, and Jose Malaga -- Computational approaches to metabolomics. Session introduction / David S. Wishart and Russell Greiner. Leveraging latent information in NMR spectra for robust predictive models / David Chang, Aalim Weljie, and Jack Newton. Bioinformatics data profiling tools: a prelude to metabolic profiling / Natarajan Ganesan, Bala Kalyanasundaram, and Mahe Velauthapllai. Comparative QSAR analysis of bacterial, fungal, plant and human metabolites / Emre Karakoc, S. Cenk Sahinalp, and Artem Cherkasov. BioSpider: a web server for automating metabolome annotations / Craig Knox ... [et al.]. New bioinformatics resources for metabolomics / John L. Markley ... [et al.]. Setup X - a public study design database for metabolomic projects / Martin Scholz and Oliver Fiehn. Comparative metabolomics of breast cancer / Chen Yang ... [et al.]. Metabolic flux profiling of reaction modules in liver drug transformation / Jeongah Yoon and Kyongbum Lee -- New frontiers in biomedical text mining. Session introduction / Pierre Zweigenbaum ... [et al.]. Extracting semantic predications from medline citations for pharmacogenomics / Caroline B. Ahlers ... [et al.]. Annotating genes using textual patterns / Ali Cakmak and Gultekin Ozsoyoglu. A fault model for ontology mapping, alignment, and linking systems / Helen L. Johnson, K. Bretonnel Cohen, and Lawrence Hunter. Integrating natural language processing with flybase curation / Nikiforos Karamanis Y. ... [et al.]. A stacked graphical model for associating sub-images with sub-captions / Zhenzhen Kou, William W. Cohen, and Robert F. Murphy. GeneRIF quality assurance as summary revision / Zhiyong Lu, K. Bretonnel Cohen, and Lawrence Hunter. Evaluating the automatic mapping of human gene and protein mentions to unique identifiers / Alexander A. Morgan ... [et al.]. Multiple approaches to fine-grained indexing of the biomedical literature / Aurelie Neveol ... [et al.]. Mining patents using molecular similarity search / James Rhodes ... [et al.]. Discovering implicit associations between genes and hereditary diseases / Kazuhiro Seki and Javed Mostafa. A cognitive evaluation of four online search engines for answering definitional questions posed by physicians / Hong Yu and David Kaufman -- Biodiversity informatics: managing knowledge beyond humans and model organisms. Session introduction / Indra Neil Sarkar. Biomediator data integration and inference for functional annotation of anonymous sequences / Eithon Cadag ... [et al.]. Absent sequences: nullomers and primes / Greg Hampikian and Tim Andersen. An anatomical ontology for amphibians / Anne M. Maglia ... [et al.]. Recommending pathway genes using a compendium of clustering solutions / David M. Ng, Marcos H. Woehrmann, and Joshua M. Stuart. Semi-automated XML markup of biosystematic legacy literature with the Goldengate editor / Guido Sautter, Klemens B�ohm, and Donat Agosti -- Computational proteomics: high-throughput analysis for systems biology. Session introduction / William Cannon and Bobbie-Jo Webb-Robertson. Advancement in protein inference from shotgun proteomics using peptide detectability / Pedro Alves ... [et al.]. Mining tandem mass spectral data to develop a more accurate mass error model for peptide identification / Yan Fu ... [et al.]. Assessing and combining reliability of protein interaction sources / Sonia Leach ... [et al.]. Probabilistic modeling of systematic errors in two-hybrid experiments / David Sontag, Rohit Singh, and Bonnie Berger. Prospective exploration of biochemical tissue composition via imaging mass spectrometry guided by principal component analysis / Raf Van de Plas ... [et al.] -- DNA-protein interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk ... [et al.]. Discovering motifs with transcription factor domain knowledge / Henry C. M. Leung, Francis Y. L. Chin, and Bethany M. Y. Chan. Ab initio prediction of transcription factor binding sites / L. Angela Liu and Joel S. Bader. Comparative pathway annotation with protein-DNA interaction and operon information via graph tree decomposition / Jizhen Zhao, Dongsheng Che, and Liming Cai. |
| Record Nr. | UNINA-9910778260903321 |
| Hackensack, N.J., : World Scientific, c2007 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Pacific Symposium on Biocomputing 2007 : Maui, Hawaii, 3-7 January 2007 / / edited by Russ B. Altman ... [et al.]
| Pacific Symposium on Biocomputing 2007 : Maui, Hawaii, 3-7 January 2007 / / edited by Russ B. Altman ... [et al.] |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Hackensack, N.J., : World Scientific, c2007 |
| Descrizione fisica | xvi, 507 p. : ill |
| Disciplina | 570.15 |
| Altri autori (Persone) | AltmanRuss |
| Soggetto topico |
Biology - Computer simulation
Biology - Mathematical models Molecular biology - Computer simulation Molecular biology - Mathematical models |
| ISBN |
1-281-91203-4
9786611912031 981-277-243-X |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Preface -- Protein interactions and diseases. Session introduction / Maricel Kann ... [et al.]. Graph kernels for disease outcome prediction from protein-protein interaction networks / Karsten M. Borgwardt ... [et al.]. Chalkboard: ontology-based pathway modeling and qualitative inference of disease mechanisms / Daniel L. Cook, Jesse C. Wiley, and John H. Gennari. Mining gene-disease relationships from biomedical literature weighting protein-protein interactions and connectivity measures / Graciela Gonzalez ... [et al.]. Predicting structure and dynamics of loosely-ordered protein complexes: influenza hemagglutinin fusion peptide / Peter M. Kasson and Vijay S. Pande. Protein interactions and disease phenotypes in the ABC transporter superfamily / Libusha Kelly, Rachel Karchin, and Andrej Sali. LTHREADER: prediction of Ligand-receptor interactions using localized threading / Vinay Pulim, Jadwiga Bienkowska, and Bonnie Berger. Discovery of protein interaction networks shared by diseases / Lee Sam ... [et al.]. An iterative algorithm for metabolic network-based drug target identification / Padmavati Sridhar, Tamer Kahveci, and Sanjay Ranka. Transcriptional interactions during smallpox infection and identification of early infection biomarkers / Willy A. Valdivia-Granda, Maricel G. Kann, and Jose Malaga -- Computational approaches to metabolomics. Session introduction / David S. Wishart and Russell Greiner. Leveraging latent information in NMR spectra for robust predictive models / David Chang, Aalim Weljie, and Jack Newton. Bioinformatics data profiling tools: a prelude to metabolic profiling / Natarajan Ganesan, Bala Kalyanasundaram, and Mahe Velauthapllai. Comparative QSAR analysis of bacterial, fungal, plant and human metabolites / Emre Karakoc, S. Cenk Sahinalp, and Artem Cherkasov. BioSpider: a web server for automating metabolome annotations / Craig Knox ... [et al.]. New bioinformatics resources for metabolomics / John L. Markley ... [et al.]. Setup X - a public study design database for metabolomic projects / Martin Scholz and Oliver Fiehn. Comparative metabolomics of breast cancer / Chen Yang ... [et al.]. Metabolic flux profiling of reaction modules in liver drug transformation / Jeongah Yoon and Kyongbum Lee -- New frontiers in biomedical text mining. Session introduction / Pierre Zweigenbaum ... [et al.]. Extracting semantic predications from medline citations for pharmacogenomics / Caroline B. Ahlers ... [et al.]. Annotating genes using textual patterns / Ali Cakmak and Gultekin Ozsoyoglu. A fault model for ontology mapping, alignment, and linking systems / Helen L. Johnson, K. Bretonnel Cohen, and Lawrence Hunter. Integrating natural language processing with flybase curation / Nikiforos Karamanis Y. ... [et al.]. A stacked graphical model for associating sub-images with sub-captions / Zhenzhen Kou, William W. Cohen, and Robert F. Murphy. GeneRIF quality assurance as summary revision / Zhiyong Lu, K. Bretonnel Cohen, and Lawrence Hunter. Evaluating the automatic mapping of human gene and protein mentions to unique identifiers / Alexander A. Morgan ... [et al.]. Multiple approaches to fine-grained indexing of the biomedical literature / Aurelie Neveol ... [et al.]. Mining patents using molecular similarity search / James Rhodes ... [et al.]. Discovering implicit associations between genes and hereditary diseases / Kazuhiro Seki and Javed Mostafa. A cognitive evaluation of four online search engines for answering definitional questions posed by physicians / Hong Yu and David Kaufman -- Biodiversity informatics: managing knowledge beyond humans and model organisms. Session introduction / Indra Neil Sarkar. Biomediator data integration and inference for functional annotation of anonymous sequences / Eithon Cadag ... [et al.]. Absent sequences: nullomers and primes / Greg Hampikian and Tim Andersen. An anatomical ontology for amphibians / Anne M. Maglia ... [et al.]. Recommending pathway genes using a compendium of clustering solutions / David M. Ng, Marcos H. Woehrmann, and Joshua M. Stuart. Semi-automated XML markup of biosystematic legacy literature with the Goldengate editor / Guido Sautter, Klemens B�ohm, and Donat Agosti -- Computational proteomics: high-throughput analysis for systems biology. Session introduction / William Cannon and Bobbie-Jo Webb-Robertson. Advancement in protein inference from shotgun proteomics using peptide detectability / Pedro Alves ... [et al.]. Mining tandem mass spectral data to develop a more accurate mass error model for peptide identification / Yan Fu ... [et al.]. Assessing and combining reliability of protein interaction sources / Sonia Leach ... [et al.]. Probabilistic modeling of systematic errors in two-hybrid experiments / David Sontag, Rohit Singh, and Bonnie Berger. Prospective exploration of biochemical tissue composition via imaging mass spectrometry guided by principal component analysis / Raf Van de Plas ... [et al.] -- DNA-protein interactions: integrating structure, sequence, and function. Session introduction / Martha L. Bulyk ... [et al.]. Discovering motifs with transcription factor domain knowledge / Henry C. M. Leung, Francis Y. L. Chin, and Bethany M. Y. Chan. Ab initio prediction of transcription factor binding sites / L. Angela Liu and Joel S. Bader. Comparative pathway annotation with protein-DNA interaction and operon information via graph tree decomposition / Jizhen Zhao, Dongsheng Che, and Liming Cai. |
| Altri titoli varianti | Biocomputing 2007 |
| Record Nr. | UNINA-9910819119103321 |
| Hackensack, N.J., : World Scientific, c2007 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Pacific Symposium on Biocomputing 2014, Kohala Coast, Hawaii, USA, 3-7 January 2014 / / edited by Russ B. Altman, Stanford University, USA [and 5 others]
| Pacific Symposium on Biocomputing 2014, Kohala Coast, Hawaii, USA, 3-7 January 2014 / / edited by Russ B. Altman, Stanford University, USA [and 5 others] |
| Autore | Russ B Altman |
| Pubbl/distr/stampa | World Scientific Publishing Co, 2013 |
| Descrizione fisica | 1 online resource (vii, 426 pages) : illustrations (some color) |
| Disciplina | 570.113 |
| Collana | Gale eBooks |
| Soggetto topico |
Biology - Mathematical models
Biology - Computer simulation Molecular biology - Mathematical models Molecular biology - Computer simulation |
| Soggetto non controllato |
Protein Interactions
Metabolomics Biocomputing Computational Genetics Ontology Computational Proteomics Bioinformatics |
| ISBN | 981-4583-22-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Cancer panomics: Computational methods and infrastructure for integrative analysis of cancer high-throughput "OMICS" data. Session introduction / Soren Brunak ... [et al.] -- Tumor haplotype assembly algorithms for cancer genomics / Derek Aguiar, Wendy S.W. Wong, Sorin Istrail -- Extracting significant sample-specific cancer mutations using their protein interactions / Liviu Badea -- The stream algorithm: Computationally efficient ridge-regression via Bayesian model averaging, and applications to pharmacogenomic prediction of cancer cell line sensitivity / Elias Chaibub Neto ... [et al.] -- Sharing information to reconstruct patient-specific pathways in heterogeneous diseases / Anthony Gitter ... [et al.] -- Detecting statistical interaction between somatic mutational events and germline variation from next-generation sequence data / Hao Hu, Chad D. Huff -- Systematic assessment of analytical methods for drug sensitivity prediction from cancer cell line data / In Sock Jang ... [et al.] -- Integrative analysis of two cell lines derived from a non-small-lung cancer patient - A panomics approach / Oleg Mayba ... [et al.] -- An integrated approach to blood-based cancer diagnosis and biomarker discovery / Martin Renqiang Min ... [et al.] -- Multiplex meta-analysis of medulloblastoma expression studies with external controls / Alexander A. Morgan ... [et al.] -- Computational approaches to drug repurposing and pharmacology. Session introduction / S. Joshua Swamidass ... [et al.] -- Challenges in secondary analysis of high throughput screening data / Aurora S. Blucher, Shannon K. McWeeney -- Drug intervention response predictions with paradigm (DIRPP) identifies drug resistant cancer cell lines and pathway mechanisms of resistance / Douglas Brubaker ... [et al.] -- Anti-infectious drug repurposing using an integrated chemical genomics and structural systems biology approach / Clara Ng ... [et al.] -- Drug-target interaction prediction by integrating chemical, genomic, functional and pharmacological data / Fan Yang, Jinbo Xu, Jianyang Zeng -- Prediction of off-target drug effects through data fusion / Emmanuel R. Yera, Ann E. Cleves, Ajay N. Jain -- Exploring the pharmacogenomics knowledge base (PharmGKB) for repositioning breast cancer drugs by leveraging web ontology language (OWL) and cheminformatics approaches / Qian Zhu ... [et al.] -- Detecting and characterizing pleiotropy: New methods for uncovering the connection between the complexity of genomic architecture and multiple phenotypes. Session introduction / Anna L. Tyler, Dana C. Crawford, Sarah A. Pendergrass -- Using the bipartite human phenotype network to reveal pleiotropy and epistasis beyond the gene / Christian Darabos, Samantha H. Harmon, Jason H. Moore -- Environment-wide association study (EWAS) for type 2 diabetes in the Marshfield personalized medicine research project biobank / Molly A. Hall ... [et al.] -- Dissection of complex gene expression using the combined analysis of pleiotropy and epistasis / Vivek M. Philip, Anna L. Tyler, Gregory W. Carter -- Personalized medicine: From genotypes and molecular phenotypes towards therapy. Session introduction / Jennifer Listgarten ... [et al.] -- PATH-SCAN: A reporting tool for identifying clinically actionable variants / Roxana Daneshjou ... [et al.] -- Imputation-based assessment of next generation rare exome variant arrays / Alicia R. Martin ... [et al.] -- Utilization of an EMR-biorepository to identify the genetic predictors of calcineurin-inhibitor toxicity in heart transplant recipients/ Matthew Oetjens ... [et al.] -- Robust reverse engineering of dynamic gene networks under sample size heterogeneity / Ankur P. Parikh, Wei Wu, Eric P. Xing -- Variant priorization and analysis incorporating problematic regions of the genome / Anil Patwardhan ... [et al.] -- Bags of words models of epitope sets: HIV viral load regression with counting grids / Alessandro Perina, Pietro Lovato, Nebojsa Jojic -- Joint association discovery and diagnosis of Alzheimer's disease by supervised heterogeneous multiview learning / Shandian Zhe ... [et al.] -- Text and data mining for biomedical discover. Session introduction / Graciela H. Gonzalez ... [et al.] -- Vector quantization kernels for the classification of protein sequences and structures / Wyatt T. Clark, Predrag Radivojac -- Combining Heterogenous data for prediction of disease related and pharmacogenes / Christopher S. Funk, Lawrence E. Hunter, K. Bretonnel Cohen -- A novel profile biomarker diagnosis for mass spectral proteomics / Henry Han -- Towards pathway curation through literature mining - A case study using PharmGKB / Ravikumar K.E., Kavishwar B. Wagholikar, Hongfang Liu -- Sparse generalized functional linear model for predicting remission status of depression patients / Yashu Liu ... [et al.] -- Development of a data-mining algorithm to identify ages at reproductive milestones in electronic medical records / Jennifer Malinowski, Eric Farber-Eger, Dana C. Crawford -- An efficient algorithm to integrate network and attribute data for gene function prediction / Shankar Vembu, Quaid Morris -- Matrix factorization-based data fusion for gene function prediction in Baker's yeast and slime mold / Marinka Zitnik, Blaz Zupan -- Workshops. Applications of bioinformatics to non-coding RNAs in the era of next-generation sequencing / Chao Cheng, Jason Moore, Casey Greene -- Building the next generation of quantitative biologists / Kristine A. Pattin ... [et al.] -- Uncovering the etiology of autism spectrum disorders: Genomics, bioinformatics, environment, data collection and exploration, and future possibilities / Sarah A. Pendergrass, Santhosh Girirajan, Scott Selleck. |
| Record Nr. | UNINA-9910140405603321 |
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Russ B Altman
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| World Scientific Publishing Co, 2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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