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Database annotation in molecular biology / / editor, Arthur M. Lesk
| Database annotation in molecular biology / / editor, Arthur M. Lesk |
| Pubbl/distr/stampa | Chichester, West Sussex ; ; Hoboken, NJ, : John Wiley, c2005 |
| Descrizione fisica | 1 online resource (267 p.) |
| Disciplina | 572.8 |
| Altri autori (Persone) | LeskArthur M |
| Soggetto topico |
Bioinformatics
Nucleotide sequence - Data processing Amino acid sequence - Data processing |
| ISBN |
1-280-23872-0
9786610238729 0-470-01242-0 0-470-85685-8 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Database Annotation in Molecular Biology; Contents; Preface; List of Contributors; 1 Annotation and Databases: Status and Prospects; 1.1 Introduction; 1.2 Annotation of Genomic Data; 1.3 Databases: Concepts and Definitions; 1.4 Access to Annotation Databases; Glossary; References; I THE DATABANKS; 2 Survey of Sequence Databases: Archival Projects; 2.1 Introduction; 2.2 Nucleotide Sequence Databases; 2.3 Swiss-Prot; 2.4 TrEMBL; 2.5 PIR; 2.6 UniProt; References; 3 Survey of Sequence Databases: Derived Databases; 3.1 Introduction; 3.2 Protein and Gene Family Databases; 3.3 Discussion; References
4 Databanks of Macromolecular Structure4.1 Introduction; 4.2 Background; 4.3 Archival Structural Databases Now; 4.4 Contextual Databases; 4.5 Derived Structural Data Databases; 4.6 Summary and View of the Future; References; 5 Gene Expression Databases; 5.1 Introduction; 5.2 What Do We Mean by Microarray Gene Expression Data?; 5.3 Data Complexity; 5.4 Minimum Information About a Microarray Experiment (MIAME); 5.5 Journals and MIAME; 5.6 Storage and Exchange Formats: MAGE-OM and MAGE-ML; 5.7 ArrayExpress; 5.8 Annotation Tools; 5.9 Curation; 5.10 Standardization and Semantics 5.11 Public Microarray Databases5.12 ArrayExpress, an Example of a Public Repository; 5.13 Submissions to ArrayExpress; 5.14 MIAMExpress and Other MIAME Compliant Annotation Systems; 5.15 Databases of Protein Expression Patterns; 5.16 The Gene Expression Database (GXD); 5.17 Conclusion; References; II THE BASIS OF ANNOTATION; 6 Taxonomy: a Moving Target for Sequence Data; 6.1 Introduction; 6.2 Nomenclature; 6.3 Operational Definitions; 6.4 Searching for the Taxonomic Gold Standard; 6.5 Conclusions; References; 7 Genomics and Proteomics: Design and Sources of Annotation 7.1 Beyond the Sequence: the Challenge of Complete Genome Analysis7.2 Extracting the Genes; 7.3 Organism Specific Peculiarities; 7.4 Topology of Genomes; 7.5 Gene Extraction Pipelines; 7.6 Added Value and Knowledge; 7.7 Beyond the Parts List; References; 8 Annotation of Protein Sequences; 8.1 Introduction; 8.2 What is Annotation?; 8.3 UniProt: Universal Protein Resource; 8.4 Protein Family Classification; 8.5 InterPro: Integrated Resource of Protein Families, Domains and Sites; 8.6 PIR Protein Families and Superfamilies; 8.7 Ontologies 8.8 Protein Names, Source Information and Unique Identifiers8.9 Common Identification Errors; 8.10 Evidence Attribution; 8.11 Position Specific Annotations; 8.12 Rule-based Annotation; 8.13 Conclusions; Acknowledgements; References; 9 Issues in the Annotation of Protein Structures; 9.1 Data Harvesting; 9.2 Identification of the Biologically Relevant Assembly; 9.3 Taxonomy; 9.4 Sequence Recognition and Cross-reference; 9.5 Recognition of Secondary Structure Elements; 9.6 Validation of Structures; 9.7 Residue Identification; 9.8 Hetgroup Identification; 9.9 Solvent Handling 9.10 Miscellaneous Annotation Issues |
| Record Nr. | UNINA-9910143748003321 |
| Chichester, West Sussex ; ; Hoboken, NJ, : John Wiley, c2005 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Pattern discovery in biomolecular data [[electronic resource] ] : tools, techniques, and applications / / edited by Jason T.L. Wang, Bruce A. Shapiro, Dennis Shasha
| Pattern discovery in biomolecular data [[electronic resource] ] : tools, techniques, and applications / / edited by Jason T.L. Wang, Bruce A. Shapiro, Dennis Shasha |
| Pubbl/distr/stampa | New York, : Oxford University, 1999 |
| Descrizione fisica | 1 online resource (272 p.) |
| Disciplina | 572.8/5/0285 |
| Altri autori (Persone) |
WangJason T. L
ShapiroBruce A ShashaDennis Elliott |
| Collana | Oxford scholarship online |
| Soggetto topico |
Nucleotide sequence - Data processing
Amino acid sequence - Data processing Pattern recognition systems Information storage and retrieval systems - Nucleotide sequence |
| Soggetto genere / forma | Electronic books. |
| ISBN |
0-19-756125-X
1-280-76167-9 9786610761678 0-19-802806-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | pt. 1. Finding patterns in sequences -- pt. 2. Finding patterns in 3D structures -- pt. 3. System components for discovery. |
| Record Nr. | UNINA-9910453368003321 |
| New York, : Oxford University, 1999 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Pattern discovery in biomolecular data [[electronic resource] ] : tools, techniques, and applications / / edited by Jason T.L. Wang, Bruce A. Shapiro, Dennis Shasha
| Pattern discovery in biomolecular data [[electronic resource] ] : tools, techniques, and applications / / edited by Jason T.L. Wang, Bruce A. Shapiro, Dennis Shasha |
| Pubbl/distr/stampa | New York, : Oxford University, 1999 |
| Descrizione fisica | 1 online resource (272 p.) |
| Disciplina | 572.8/5/0285 |
| Altri autori (Persone) |
WangJason T. L
ShapiroBruce A ShashaDennis Elliott |
| Collana | Oxford scholarship online |
| Soggetto topico |
Nucleotide sequence - Data processing
Amino acid sequence - Data processing Pattern recognition systems Information storage and retrieval systems - Nucleotide sequence |
| ISBN |
0-19-756125-X
1-280-76167-9 9786610761678 0-19-802806-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | pt. 1. Finding patterns in sequences -- pt. 2. Finding patterns in 3D structures -- pt. 3. System components for discovery. |
| Record Nr. | UNINA-9910782600803321 |
| New York, : Oxford University, 1999 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Pattern discovery in biomolecular data : tools, techniques, and applications / / edited by Jason T.L. Wang, Bruce A. Shapiro, Dennis Shasha
| Pattern discovery in biomolecular data : tools, techniques, and applications / / edited by Jason T.L. Wang, Bruce A. Shapiro, Dennis Shasha |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | New York, : Oxford University, 1999 |
| Descrizione fisica | 1 online resource (272 p.) |
| Disciplina | 572.8/5/0285 |
| Altri autori (Persone) |
WangJason T. L
ShapiroBruce A ShashaDennis Elliott |
| Collana | Oxford scholarship online |
| Soggetto topico |
Nucleotide sequence - Data processing
Amino acid sequence - Data processing Pattern recognition systems Information storage and retrieval systems - Nucleotide sequence |
| ISBN |
0-19-028372-6
0-19-756125-X 1-280-76167-9 9786610761678 0-19-802806-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | pt. 1. Finding patterns in sequences -- pt. 2. Finding patterns in 3D structures -- pt. 3. System components for discovery. |
| Record Nr. | UNINA-9910824435403321 |
| New York, : Oxford University, 1999 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Practical bioinformatics / Janusz M. Bujnicki (ed.)
| Practical bioinformatics / Janusz M. Bujnicki (ed.) |
| Pubbl/distr/stampa | New York : Springer, 2004 |
| Descrizione fisica | xvii, 265 p. : ill. ; 24 cm |
| Disciplina | 572.80285 |
| Altri autori (Persone) | Bujnicki, Janusz M.author |
| Collana | Nucleic acids and molecular biology ; 15 |
| Soggetto topico |
Proteins - Research - Data processing
Amino acid sequence - Data processing Nucleic acids - Research - Data processing |
| ISBN | 3540206132 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNISALENTO-991000578329707536 |
| New York : Springer, 2004 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. del Salento | ||
| ||
