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Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy
| Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy |
| Autore | Dardel Frédéric |
| Pubbl/distr/stampa | Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 |
| Descrizione fisica | 1 online resource (253 p.) |
| Disciplina |
570.285
572.80285 |
| Altri autori (Persone) | KépèsFrançois |
| Soggetto topico |
Bioinformatics
Genomics |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-280-73873-1
9786610738731 0-470-02003-2 0-470-02002-4 |
| Classificazione |
BIO 110f
BIO 180f WC 7700 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Contents; Preface to the French edition; Preface to the English edition; 1: Genome sequencing; 1.1 Automatic sequencing; 1.2 Sequencing strategies; 1.3 Fragmentation strategies; 1.4 Sequence assembly; 1.5 Filling gaps; 1.6 Obstacles to reconstruction; 1.7 Utilizing a complementary 'large'1 clone library; 1.8 The first large-scale sequencing project: The Haemophilus influenzae genome; 1.9 cDNA and EST; 2: Sequence comparisons; 2.1 Introduction: Comparison as a sequence prediction method; 2.2 A sample molecule: the human androsterone receptor
2.3 Sequence homologies - functional homologies2.4 Comparison matrices; 2.5 The problem of insertions and deletions; 2.6 Optimal alignment: the dynamic programming method; 2.7 Fast heuristic methods; 2.8 Sensitivity, specificity, and confidence level; 2.9 Multiple alignments; 3: Comparative genomics; 3.1 General properties of genomes; 3.2 Genome comparisons; 3.3 Gene evolution and phylogeny: applications to annotation; 4: Genetic information and biological sequences; 4.1 Introduction: Coding levels; 4.2 Genes and the genetic code; 4.3 Expression signals; 4.4 Specific sites 4.5 Sites located on DNA4.6 Sites present on RNA; 4.7 Pattern detection methods; 5: Statistics and sequences; 5.1 Introduction; 5.2 Nucleotide base and amino acid distribution; 5.3 The biological basis of codon bias; 5.4 Using statistical bias for prediction; 5.5 Modeling DNA sequences; 5.6 Complex models; 5.7 Sequencing errors and hidden Markov models; 5.8 Hidden Markov processes: a general sequence analysis tool; 5.9 The search for genes - a difficult art; 6: Structure prediction; 6.1 The structure of RNA; 6.2 Properties of the RNA molecule; 6.3 Secondary RNA structures 6.4 Thermodynamic stability of RNA structures6.5 Finding the most stable structure; 6.6 Validation of predicted secondary structures; 6.7 Using chemical and enzymatic probing to analyze folding; 6.8 Long-distance interactions and three-dimensional structure prediction; 6.9 Protein structure; 6.10 Secondary structure prediction; 6.11 Three-dimensional modeling based on homologous protein structure; 6.12 Predicting folding; 7: Transcriptome and proteome: macromolecular networks; 7.1 Introduction; 7.2 Post-genomic methods; 7.3 Macromolecular networks; 7.4 Topology of macromolecular networks 7.5 Modularity and dynamics of macromolecular networks7.6 Inference of regulatory networks; 8: Simulation of biological processes in the genome context; 8.1 Types of simulations; 8.2 Prediction and explanation; 8.3 Simulation of molecular networks; 8.4 Generic post-genomic simulators; Index |
| Record Nr. | UNINA-9910143739203321 |
Dardel Frédéric
|
||
| Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy
| Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy |
| Autore | Dardel Frédéric |
| Pubbl/distr/stampa | Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 |
| Descrizione fisica | 1 online resource (253 p.) |
| Disciplina |
570.285
572.80285 |
| Altri autori (Persone) | KépèsFrançois |
| Soggetto topico |
Bioinformatics
Genomics |
| ISBN |
1-280-73873-1
9786610738731 0-470-02003-2 0-470-02002-4 |
| Classificazione |
BIO 110f
BIO 180f WC 7700 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Contents; Preface to the French edition; Preface to the English edition; 1: Genome sequencing; 1.1 Automatic sequencing; 1.2 Sequencing strategies; 1.3 Fragmentation strategies; 1.4 Sequence assembly; 1.5 Filling gaps; 1.6 Obstacles to reconstruction; 1.7 Utilizing a complementary 'large'1 clone library; 1.8 The first large-scale sequencing project: The Haemophilus influenzae genome; 1.9 cDNA and EST; 2: Sequence comparisons; 2.1 Introduction: Comparison as a sequence prediction method; 2.2 A sample molecule: the human androsterone receptor
2.3 Sequence homologies - functional homologies2.4 Comparison matrices; 2.5 The problem of insertions and deletions; 2.6 Optimal alignment: the dynamic programming method; 2.7 Fast heuristic methods; 2.8 Sensitivity, specificity, and confidence level; 2.9 Multiple alignments; 3: Comparative genomics; 3.1 General properties of genomes; 3.2 Genome comparisons; 3.3 Gene evolution and phylogeny: applications to annotation; 4: Genetic information and biological sequences; 4.1 Introduction: Coding levels; 4.2 Genes and the genetic code; 4.3 Expression signals; 4.4 Specific sites 4.5 Sites located on DNA4.6 Sites present on RNA; 4.7 Pattern detection methods; 5: Statistics and sequences; 5.1 Introduction; 5.2 Nucleotide base and amino acid distribution; 5.3 The biological basis of codon bias; 5.4 Using statistical bias for prediction; 5.5 Modeling DNA sequences; 5.6 Complex models; 5.7 Sequencing errors and hidden Markov models; 5.8 Hidden Markov processes: a general sequence analysis tool; 5.9 The search for genes - a difficult art; 6: Structure prediction; 6.1 The structure of RNA; 6.2 Properties of the RNA molecule; 6.3 Secondary RNA structures 6.4 Thermodynamic stability of RNA structures6.5 Finding the most stable structure; 6.6 Validation of predicted secondary structures; 6.7 Using chemical and enzymatic probing to analyze folding; 6.8 Long-distance interactions and three-dimensional structure prediction; 6.9 Protein structure; 6.10 Secondary structure prediction; 6.11 Three-dimensional modeling based on homologous protein structure; 6.12 Predicting folding; 7: Transcriptome and proteome: macromolecular networks; 7.1 Introduction; 7.2 Post-genomic methods; 7.3 Macromolecular networks; 7.4 Topology of macromolecular networks 7.5 Modularity and dynamics of macromolecular networks7.6 Inference of regulatory networks; 8: Simulation of biological processes in the genome context; 8.1 Types of simulations; 8.2 Prediction and explanation; 8.3 Simulation of molecular networks; 8.4 Generic post-genomic simulators; Index |
| Record Nr. | UNINA-9910831026903321 |
|
Dardel Frédéric
|
||
| Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics : genomics and post-genomics / / Frederic Dardel and Francois Kepes ; translated by Noah Hardy
| Bioinformatics : genomics and post-genomics / / Frederic Dardel and Francois Kepes ; translated by Noah Hardy |
| Autore | Dardel Frédéric |
| Pubbl/distr/stampa | Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 |
| Descrizione fisica | 1 online resource (253 p.) |
| Disciplina |
570.285
572.80285 |
| Altri autori (Persone) | KépèsFrançois |
| Soggetto topico |
Bioinformatics
Genomics |
| ISBN |
9786610738731
9781280738739 1280738731 9780470020036 0470020032 9780470020029 0470020024 |
| Classificazione |
BIO 110f
BIO 180f WC 7700 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Contents; Preface to the French edition; Preface to the English edition; 1: Genome sequencing; 1.1 Automatic sequencing; 1.2 Sequencing strategies; 1.3 Fragmentation strategies; 1.4 Sequence assembly; 1.5 Filling gaps; 1.6 Obstacles to reconstruction; 1.7 Utilizing a complementary 'large'1 clone library; 1.8 The first large-scale sequencing project: The Haemophilus influenzae genome; 1.9 cDNA and EST; 2: Sequence comparisons; 2.1 Introduction: Comparison as a sequence prediction method; 2.2 A sample molecule: the human androsterone receptor
2.3 Sequence homologies - functional homologies2.4 Comparison matrices; 2.5 The problem of insertions and deletions; 2.6 Optimal alignment: the dynamic programming method; 2.7 Fast heuristic methods; 2.8 Sensitivity, specificity, and confidence level; 2.9 Multiple alignments; 3: Comparative genomics; 3.1 General properties of genomes; 3.2 Genome comparisons; 3.3 Gene evolution and phylogeny: applications to annotation; 4: Genetic information and biological sequences; 4.1 Introduction: Coding levels; 4.2 Genes and the genetic code; 4.3 Expression signals; 4.4 Specific sites 4.5 Sites located on DNA4.6 Sites present on RNA; 4.7 Pattern detection methods; 5: Statistics and sequences; 5.1 Introduction; 5.2 Nucleotide base and amino acid distribution; 5.3 The biological basis of codon bias; 5.4 Using statistical bias for prediction; 5.5 Modeling DNA sequences; 5.6 Complex models; 5.7 Sequencing errors and hidden Markov models; 5.8 Hidden Markov processes: a general sequence analysis tool; 5.9 The search for genes - a difficult art; 6: Structure prediction; 6.1 The structure of RNA; 6.2 Properties of the RNA molecule; 6.3 Secondary RNA structures 6.4 Thermodynamic stability of RNA structures6.5 Finding the most stable structure; 6.6 Validation of predicted secondary structures; 6.7 Using chemical and enzymatic probing to analyze folding; 6.8 Long-distance interactions and three-dimensional structure prediction; 6.9 Protein structure; 6.10 Secondary structure prediction; 6.11 Three-dimensional modeling based on homologous protein structure; 6.12 Predicting folding; 7: Transcriptome and proteome: macromolecular networks; 7.1 Introduction; 7.2 Post-genomic methods; 7.3 Macromolecular networks; 7.4 Topology of macromolecular networks 7.5 Modularity and dynamics of macromolecular networks7.6 Inference of regulatory networks; 8: Simulation of biological processes in the genome context; 8.1 Types of simulations; 8.2 Prediction and explanation; 8.3 Simulation of molecular networks; 8.4 Generic post-genomic simulators; Index |
| Record Nr. | UNINA-9911020348503321 |
|
Dardel Frédéric
|
||
| Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics and Computational Biology [[electronic resource] ] : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009, Proceedings / / edited by Sanguthevar Rajasekaran
| Bioinformatics and Computational Biology [[electronic resource] ] : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009, Proceedings / / edited by Sanguthevar Rajasekaran |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 |
| Descrizione fisica | 1 online resource (XIV, 450 p.) |
| Disciplina | 570 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computers Data mining Bioinformatics Artificial intelligence Information storage and retrieval Life Sciences, general Theory of Computation Data Mining and Knowledge Discovery Computational Biology/Bioinformatics Artificial Intelligence Information Storage and Retrieval |
| Soggetto genere / forma |
Kongress.
New Orleans (La., 2009) |
| ISBN | 3-642-00727-9 |
| Classificazione |
BIO 110f
BIO 180f DAT 718f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Talks -- Association Analysis Techniques for Bioinformatics Problems -- Analyzing and Interrogating Biological Networks (Abstract) -- From Architecture to Function (and Back) in Bio-networks -- A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants -- Assembly of Large Genomes from Paired Short Reads -- Amino Acid Classification and Hash Seeds for Homology Search -- Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads -- Gene Networks Viewed through Two Models -- Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper -- The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning -- Refereed Papers -- RNA Pseudoknot Folding through Inference and Identification Using TAGRNA -- Comparing Bacterial Genomes by Searching Their Common Intervals -- Generalized Binary Tanglegrams: Algorithms and Applications -- Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data -- Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding -- A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets -- Computational Protocol for Screening GPI-anchored Proteins -- Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors -- An Agent-Based Model of Solid Tumor Progression -- Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma -- Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow Approach -- Biclustering Expression Data Based on Expanding Localized Substructures -- Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction -- Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical Encoding -- The Impact of Gene Selection on Imbalanced Microarray Expression Data -- Spatial Information and Boolean Genetic Regulatory Networks -- Modeling of Genetic Regulatory Network in Stochastic ?-Calculus -- fMRI Activation Detection by MultiScale Hidden Markov Model -- cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models -- A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments -- A Fitness Distance Correlation Measure for Evolutionary Trees -- Alignment and Analysis of Closely Related Genomes -- Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements -- Multiple Sequence Alignment System for Pyrosequencing Reads -- A Bayesian Approach to High-Throughput Biological Model Generation -- Parallel Selection of Informative Genes for Classification -- Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling Pathways -- GridSPiM: A Framework for Simple Locality and Containment in the Stochastic ?-Calculus -- Mutual Information Based Extrinsic Similarity for Microarray Analysis -- Graph Spectral Approach for Identifying Protein Domains. |
| Record Nr. | UNISA-996466019303316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics and Computational Biology : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009, Proceedings / / edited by Sanguthevar Rajasekaran
| Bioinformatics and Computational Biology : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009, Proceedings / / edited by Sanguthevar Rajasekaran |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 |
| Descrizione fisica | 1 online resource (XIV, 450 p.) |
| Disciplina | 570 |
| Altri autori (Persone) | RajasekaranSanguthevar |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computer science Data mining Bioinformatics Artificial intelligence Information storage and retrieval systems Life Sciences Theory of Computation Data Mining and Knowledge Discovery Computational and Systems Biology Artificial Intelligence Information Storage and Retrieval |
| ISBN | 3-642-00727-9 |
| Classificazione |
BIO 110f
BIO 180f DAT 718f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Talks -- Association Analysis Techniques for Bioinformatics Problems -- Analyzing and Interrogating Biological Networks (Abstract) -- From Architecture to Function (and Back) in Bio-networks -- A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants -- Assembly of Large Genomes from Paired Short Reads -- Amino Acid Classification and Hash Seeds for Homology Search -- Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads -- Gene Networks Viewed through Two Models -- Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper -- The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning -- Refereed Papers -- RNA Pseudoknot Folding through Inference and Identification Using TAGRNA -- Comparing Bacterial Genomes by Searching Their Common Intervals -- Generalized Binary Tanglegrams: Algorithms and Applications -- Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data -- Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding -- A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets -- Computational Protocol for Screening GPI-anchored Proteins -- Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors -- An Agent-Based Model of Solid Tumor Progression -- Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma -- Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow Approach -- Biclustering Expression Data Based on Expanding Localized Substructures -- Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein InteractionPrediction -- Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical Encoding -- The Impact of Gene Selection on Imbalanced Microarray Expression Data -- Spatial Information and Boolean Genetic Regulatory Networks -- Modeling of Genetic Regulatory Network in Stochastic ?-Calculus -- fMRI Activation Detection by MultiScale Hidden Markov Model -- cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models -- A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments -- A Fitness Distance Correlation Measure for Evolutionary Trees -- Alignment and Analysis of Closely Related Genomes -- Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements -- Multiple Sequence Alignment System for Pyrosequencing Reads -- A Bayesian Approach to High-Throughput Biological Model Generation -- Parallel Selection of Informative Genes for Classification -- Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling Pathways -- GridSPiM: A Framework for Simple Locality and Containment in the Stochastic ?-Calculus -- Mutual Information Based Extrinsic Similarity for Microarray Analysis -- Graph Spectral Approach for Identifying Protein Domains. |
| Record Nr. | UNINA-9910483269603321 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Comparative Genomics [[electronic resource] ] : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009, Proceedings / / edited by Francesca D. Ciccarelli, István Miklós
| Comparative Genomics [[electronic resource] ] : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009, Proceedings / / edited by Francesca D. Ciccarelli, István Miklós |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 |
| Descrizione fisica | 1 online resource (VIII, 241 p.) |
| Disciplina | 570 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Bioinformatics Bioinformatics Computational biology Computer science—Mathematics Life Sciences, general Computational Biology/Bioinformatics Computer Appl. in Life Sciences Symbolic and Algebraic Manipulation Discrete Mathematics in Computer Science |
| Soggetto genere / forma |
Budapest (2009)
Kongress. |
| ISBN | 3-642-04744-0 |
| Classificazione |
BIO 110f
BIO 180f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods -- Natural Parameter Values for Generalized Gene Adjacency -- Parking Functions, Labeled Trees and DCJ Sorting Scenarios -- Counting All DCJ Sorting Scenarios -- Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction -- Finding Nested Common Intervals Efficiently -- DCJ Median Problems on Linear Multichromosomal Genomes: Graph Representation and Fast Exact Solutions -- Rearrangement Models and Single-Cut Operations -- Aligning Two Genomic Sequences That Contain Duplications -- Inferring the Recent Duplication History of a Gene Cluster -- Pseudo Boolean Programming for Partially Ordered Genomes -- Computing the Summed Adjacency Disruption Number between Two Genomes with Duplicate Genes Using Pseudo-Boolean Optimization -- Reconstructing Histories of Complex Gene Clusters on a Phylogeny -- Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples -- Whole-Genome Analysis of Gene Conversion Events -- A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances -- Comparative Genomics and Extensive Recombinations in Phage Communities -- Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana -- Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets. |
| Record Nr. | UNISA-996465660703316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009, Proceedings / / edited by Francesca D. Ciccarelli, István Miklós
| Comparative Genomics : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009, Proceedings / / edited by Francesca D. Ciccarelli, István Miklós |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 |
| Descrizione fisica | 1 online resource (VIII, 241 p.) |
| Disciplina | 570 |
| Altri autori (Persone) |
CiccarelliFrancesca D
MiklósIstván |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Bioinformatics Computer science - Mathematics Discrete mathematics Life Sciences Computational and Systems Biology Symbolic and Algebraic Manipulation Discrete Mathematics in Computer Science |
| ISBN | 3-642-04744-0 |
| Classificazione |
BIO 110f
BIO 180f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods -- Natural Parameter Values for Generalized Gene Adjacency -- Parking Functions, Labeled Trees and DCJ Sorting Scenarios -- Counting All DCJ Sorting Scenarios -- Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction -- Finding Nested Common Intervals Efficiently -- DCJ Median Problems on Linear Multichromosomal Genomes: Graph Representation and Fast Exact Solutions -- Rearrangement Models and Single-Cut Operations -- Aligning Two Genomic Sequences That Contain Duplications -- Inferring the Recent Duplication History of a Gene Cluster -- Pseudo Boolean Programming for Partially Ordered Genomes -- Computing the Summed Adjacency Disruption Number between Two Genomes with Duplicate Genes Using Pseudo-Boolean Optimization -- Reconstructing Histories of Complex Gene Clusters on a Phylogeny -- Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples -- Whole-Genome Analysis of Gene Conversion Events -- A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances -- Comparative Genomics and Extensive Recombinations in Phage Communities -- Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana -- Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets. |
| Record Nr. | UNINA-9910484447203321 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Modern genome annotation [[electronic resource] ] : the BioSapiens Network / / Dmitrij Frishman, Alfonso Valencia, editors
| Modern genome annotation [[electronic resource] ] : the BioSapiens Network / / Dmitrij Frishman, Alfonso Valencia, editors |
| Edizione | [1st ed. 2008.] |
| Pubbl/distr/stampa | Wien ; ; New York, : Springer, c2009 |
| Descrizione fisica | 1 online resource (506 p.) |
| Disciplina | 572.80285 |
| Altri autori (Persone) |
FrishmanDmitrij
ValenciaAlfonso |
| Soggetto topico |
Bioinformatics
Human genome |
| ISBN |
1-282-50900-4
9786612509001 3-211-75123-8 |
| Classificazione |
BIO 110f
BIO 180f |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- Gene definition -- State of the art in eukaryotic gene prediction -- Quality control of gene predictions -- Gene regulation and expression -- Evaluating the prediction of cis-acting regulatory elements in genome sequences -- A biophysical approach to large-scale protein-DNA binding data -- From gene expression profiling to gene regulation -- Annotation and genetics -- Annotation, genetics and transcriptomics -- Functional annotation of proteins -- Resources for functional annotation -- Annotating bacterial genomes -- Data mining in genome annotation -- Modern genome annotation: the BioSapiens network -- Structure to function -- Harvesting the information from a family of proteins -- Protein structure prediction -- Structure prediction of globular proteins -- The state of the art of membrane protein structure prediction: from sequence to 3D structure -- Protein-protein complexes, pathways and networks -- Computational analysis of metabolic networks -- Protein-protein interactions: analysis and prediction -- Infrastructure for distributed protein annotation -- Infrastructure for distributed protein annotation -- Applications -- Viral bioinformatics -- Alternative splicing in the ENCODE protein complement. |
| Record Nr. | UNINA-9910778446703321 |
| Wien ; ; New York, : Springer, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Systems biology and synthetic biology [[electronic resource] /] / edited by Pengcheng Fu, Sven Panke
| Systems biology and synthetic biology [[electronic resource] /] / edited by Pengcheng Fu, Sven Panke |
| Pubbl/distr/stampa | Hoboken, N.J., : John Wiley & Sons, c2009 |
| Descrizione fisica | 1 online resource (674 p.) |
| Disciplina |
572.838
620.8 660.6 |
| Altri autori (Persone) |
FuPengcheng
PankeSven |
| Soggetto topico |
Biotechnology
Genetic engineering Biological systems |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-282-28012-0
9786612280122 0-470-43798-7 0-470-43797-9 |
| Classificazione |
BIO 180f
CIT 972f WD 9200 WH 2000 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
SYSTEMS BIOLOGY AND SYNTHETIC BIOLOGY; CONTENTS; Foreword; Contributors; 1 Introduction; 2 Basics of Molecular Biology, Genetic Engineering, and Metabolic Engineering; 3 High-Throughput Technologies and Functional Genomics; 4 Genomic Signal Processing of DNA Microarray Data for the Enhanced Prediction of Axillary Lymph Node Status of Breast Cancer Tumors; 5 Recombinant Genomes: Novel Resources for Systems Biology and Synthetic Biology; 6 In silico Genome-Scale Metabolic Models: The Constraint-Based Approach and its Applications
7 Mathematical Modeling of Genetic Regulatory Networks: Stress Responses in Escherichia coli8 Synthetic Life: Ethobricks for a New Biology; 9 Yeast as a Prototype for Systems Biology; 10 Construction and Applications of Genome-Scale in silico Metabolic Models for Strain Improvement; 11 Synthetic Biology: Putting Engineering into Bioengineering; 12 Rationales of Gene Design and de novo Gene Construction; 13 Self-Replication in Chemistry and Biology; 14 The Synthetic Approach for Regulatory and Metabolic Circuits; 15 Synthetic Gene Networks 16 The Theory of Biological Robustness and its Implication to Cancer17 Nucleic Acid Engineering; 18 Potential Applications of Synthetic Biology in Marine Microbial Functional Ecology and Biotechnology; 19 On Fundamental Implications of Systems and Synthetic Biology; 20 Outstanding Issues in Systems and Synthetic Biology; Index |
| Record Nr. | UNINA-9910139780803321 |
| Hoboken, N.J., : John Wiley & Sons, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Systems biology and synthetic biology [[electronic resource] /] / edited by Pengcheng Fu, Sven Panke
| Systems biology and synthetic biology [[electronic resource] /] / edited by Pengcheng Fu, Sven Panke |
| Pubbl/distr/stampa | Hoboken, N.J., : John Wiley & Sons, c2009 |
| Descrizione fisica | 1 online resource (674 p.) |
| Disciplina |
572.838
620.8 660.6 |
| Altri autori (Persone) |
FuPengcheng
PankeSven |
| Soggetto topico |
Biotechnology
Genetic engineering Biological systems |
| ISBN |
1-282-28012-0
9786612280122 0-470-43798-7 0-470-43797-9 |
| Classificazione |
BIO 180f
CIT 972f WD 9200 WH 2000 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
SYSTEMS BIOLOGY AND SYNTHETIC BIOLOGY; CONTENTS; Foreword; Contributors; 1 Introduction; 2 Basics of Molecular Biology, Genetic Engineering, and Metabolic Engineering; 3 High-Throughput Technologies and Functional Genomics; 4 Genomic Signal Processing of DNA Microarray Data for the Enhanced Prediction of Axillary Lymph Node Status of Breast Cancer Tumors; 5 Recombinant Genomes: Novel Resources for Systems Biology and Synthetic Biology; 6 In silico Genome-Scale Metabolic Models: The Constraint-Based Approach and its Applications
7 Mathematical Modeling of Genetic Regulatory Networks: Stress Responses in Escherichia coli8 Synthetic Life: Ethobricks for a New Biology; 9 Yeast as a Prototype for Systems Biology; 10 Construction and Applications of Genome-Scale in silico Metabolic Models for Strain Improvement; 11 Synthetic Biology: Putting Engineering into Bioengineering; 12 Rationales of Gene Design and de novo Gene Construction; 13 Self-Replication in Chemistry and Biology; 14 The Synthetic Approach for Regulatory and Metabolic Circuits; 15 Synthetic Gene Networks 16 The Theory of Biological Robustness and its Implication to Cancer17 Nucleic Acid Engineering; 18 Potential Applications of Synthetic Biology in Marine Microbial Functional Ecology and Biotechnology; 19 On Fundamental Implications of Systems and Synthetic Biology; 20 Outstanding Issues in Systems and Synthetic Biology; Index |
| Record Nr. | UNINA-9910830752803321 |
| Hoboken, N.J., : John Wiley & Sons, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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