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Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy
| Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy |
| Autore | Dardel Frédéric |
| Pubbl/distr/stampa | Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 |
| Descrizione fisica | 1 online resource (253 p.) |
| Disciplina |
570.285
572.80285 |
| Altri autori (Persone) | KépèsFrançois |
| Soggetto topico |
Bioinformatics
Genomics |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-280-73873-1
9786610738731 0-470-02003-2 0-470-02002-4 |
| Classificazione |
BIO 110f
BIO 180f WC 7700 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Contents; Preface to the French edition; Preface to the English edition; 1: Genome sequencing; 1.1 Automatic sequencing; 1.2 Sequencing strategies; 1.3 Fragmentation strategies; 1.4 Sequence assembly; 1.5 Filling gaps; 1.6 Obstacles to reconstruction; 1.7 Utilizing a complementary 'large'1 clone library; 1.8 The first large-scale sequencing project: The Haemophilus influenzae genome; 1.9 cDNA and EST; 2: Sequence comparisons; 2.1 Introduction: Comparison as a sequence prediction method; 2.2 A sample molecule: the human androsterone receptor
2.3 Sequence homologies - functional homologies2.4 Comparison matrices; 2.5 The problem of insertions and deletions; 2.6 Optimal alignment: the dynamic programming method; 2.7 Fast heuristic methods; 2.8 Sensitivity, specificity, and confidence level; 2.9 Multiple alignments; 3: Comparative genomics; 3.1 General properties of genomes; 3.2 Genome comparisons; 3.3 Gene evolution and phylogeny: applications to annotation; 4: Genetic information and biological sequences; 4.1 Introduction: Coding levels; 4.2 Genes and the genetic code; 4.3 Expression signals; 4.4 Specific sites 4.5 Sites located on DNA4.6 Sites present on RNA; 4.7 Pattern detection methods; 5: Statistics and sequences; 5.1 Introduction; 5.2 Nucleotide base and amino acid distribution; 5.3 The biological basis of codon bias; 5.4 Using statistical bias for prediction; 5.5 Modeling DNA sequences; 5.6 Complex models; 5.7 Sequencing errors and hidden Markov models; 5.8 Hidden Markov processes: a general sequence analysis tool; 5.9 The search for genes - a difficult art; 6: Structure prediction; 6.1 The structure of RNA; 6.2 Properties of the RNA molecule; 6.3 Secondary RNA structures 6.4 Thermodynamic stability of RNA structures6.5 Finding the most stable structure; 6.6 Validation of predicted secondary structures; 6.7 Using chemical and enzymatic probing to analyze folding; 6.8 Long-distance interactions and three-dimensional structure prediction; 6.9 Protein structure; 6.10 Secondary structure prediction; 6.11 Three-dimensional modeling based on homologous protein structure; 6.12 Predicting folding; 7: Transcriptome and proteome: macromolecular networks; 7.1 Introduction; 7.2 Post-genomic methods; 7.3 Macromolecular networks; 7.4 Topology of macromolecular networks 7.5 Modularity and dynamics of macromolecular networks7.6 Inference of regulatory networks; 8: Simulation of biological processes in the genome context; 8.1 Types of simulations; 8.2 Prediction and explanation; 8.3 Simulation of molecular networks; 8.4 Generic post-genomic simulators; Index |
| Record Nr. | UNINA-9910143739203321 |
Dardel Frédéric
|
||
| Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy
| Bioinformatics [[electronic resource] ] : genomics and post-genomics / / Frédéric Dardel and François Képès ; translated by Noah Hardy |
| Autore | Dardel Frédéric |
| Pubbl/distr/stampa | Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 |
| Descrizione fisica | 1 online resource (253 p.) |
| Disciplina |
570.285
572.80285 |
| Altri autori (Persone) | KépèsFrançois |
| Soggetto topico |
Bioinformatics
Genomics |
| ISBN |
1-280-73873-1
9786610738731 0-470-02003-2 0-470-02002-4 |
| Classificazione |
BIO 110f
BIO 180f WC 7700 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Contents; Preface to the French edition; Preface to the English edition; 1: Genome sequencing; 1.1 Automatic sequencing; 1.2 Sequencing strategies; 1.3 Fragmentation strategies; 1.4 Sequence assembly; 1.5 Filling gaps; 1.6 Obstacles to reconstruction; 1.7 Utilizing a complementary 'large'1 clone library; 1.8 The first large-scale sequencing project: The Haemophilus influenzae genome; 1.9 cDNA and EST; 2: Sequence comparisons; 2.1 Introduction: Comparison as a sequence prediction method; 2.2 A sample molecule: the human androsterone receptor
2.3 Sequence homologies - functional homologies2.4 Comparison matrices; 2.5 The problem of insertions and deletions; 2.6 Optimal alignment: the dynamic programming method; 2.7 Fast heuristic methods; 2.8 Sensitivity, specificity, and confidence level; 2.9 Multiple alignments; 3: Comparative genomics; 3.1 General properties of genomes; 3.2 Genome comparisons; 3.3 Gene evolution and phylogeny: applications to annotation; 4: Genetic information and biological sequences; 4.1 Introduction: Coding levels; 4.2 Genes and the genetic code; 4.3 Expression signals; 4.4 Specific sites 4.5 Sites located on DNA4.6 Sites present on RNA; 4.7 Pattern detection methods; 5: Statistics and sequences; 5.1 Introduction; 5.2 Nucleotide base and amino acid distribution; 5.3 The biological basis of codon bias; 5.4 Using statistical bias for prediction; 5.5 Modeling DNA sequences; 5.6 Complex models; 5.7 Sequencing errors and hidden Markov models; 5.8 Hidden Markov processes: a general sequence analysis tool; 5.9 The search for genes - a difficult art; 6: Structure prediction; 6.1 The structure of RNA; 6.2 Properties of the RNA molecule; 6.3 Secondary RNA structures 6.4 Thermodynamic stability of RNA structures6.5 Finding the most stable structure; 6.6 Validation of predicted secondary structures; 6.7 Using chemical and enzymatic probing to analyze folding; 6.8 Long-distance interactions and three-dimensional structure prediction; 6.9 Protein structure; 6.10 Secondary structure prediction; 6.11 Three-dimensional modeling based on homologous protein structure; 6.12 Predicting folding; 7: Transcriptome and proteome: macromolecular networks; 7.1 Introduction; 7.2 Post-genomic methods; 7.3 Macromolecular networks; 7.4 Topology of macromolecular networks 7.5 Modularity and dynamics of macromolecular networks7.6 Inference of regulatory networks; 8: Simulation of biological processes in the genome context; 8.1 Types of simulations; 8.2 Prediction and explanation; 8.3 Simulation of molecular networks; 8.4 Generic post-genomic simulators; Index |
| Record Nr. | UNINA-9910831026903321 |
|
Dardel Frédéric
|
||
| Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics : genomics and post-genomics / / Frederic Dardel and Francois Kepes ; translated by Noah Hardy
| Bioinformatics : genomics and post-genomics / / Frederic Dardel and Francois Kepes ; translated by Noah Hardy |
| Autore | Dardel Frederic |
| Pubbl/distr/stampa | Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 |
| Descrizione fisica | 1 online resource (253 p.) |
| Disciplina |
570.285
572.80285 |
| Altri autori (Persone) | KepesFrancois |
| Soggetto topico |
Bioinformatics
Genomics |
| ISBN |
1-280-73873-1
9786610738731 0-470-02003-2 0-470-02002-4 |
| Classificazione |
BIO 110f
BIO 180f WC 7700 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Contents; Preface to the French edition; Preface to the English edition; 1: Genome sequencing; 1.1 Automatic sequencing; 1.2 Sequencing strategies; 1.3 Fragmentation strategies; 1.4 Sequence assembly; 1.5 Filling gaps; 1.6 Obstacles to reconstruction; 1.7 Utilizing a complementary 'large'1 clone library; 1.8 The first large-scale sequencing project: The Haemophilus influenzae genome; 1.9 cDNA and EST; 2: Sequence comparisons; 2.1 Introduction: Comparison as a sequence prediction method; 2.2 A sample molecule: the human androsterone receptor
2.3 Sequence homologies - functional homologies2.4 Comparison matrices; 2.5 The problem of insertions and deletions; 2.6 Optimal alignment: the dynamic programming method; 2.7 Fast heuristic methods; 2.8 Sensitivity, specificity, and confidence level; 2.9 Multiple alignments; 3: Comparative genomics; 3.1 General properties of genomes; 3.2 Genome comparisons; 3.3 Gene evolution and phylogeny: applications to annotation; 4: Genetic information and biological sequences; 4.1 Introduction: Coding levels; 4.2 Genes and the genetic code; 4.3 Expression signals; 4.4 Specific sites 4.5 Sites located on DNA4.6 Sites present on RNA; 4.7 Pattern detection methods; 5: Statistics and sequences; 5.1 Introduction; 5.2 Nucleotide base and amino acid distribution; 5.3 The biological basis of codon bias; 5.4 Using statistical bias for prediction; 5.5 Modeling DNA sequences; 5.6 Complex models; 5.7 Sequencing errors and hidden Markov models; 5.8 Hidden Markov processes: a general sequence analysis tool; 5.9 The search for genes - a difficult art; 6: Structure prediction; 6.1 The structure of RNA; 6.2 Properties of the RNA molecule; 6.3 Secondary RNA structures 6.4 Thermodynamic stability of RNA structures6.5 Finding the most stable structure; 6.6 Validation of predicted secondary structures; 6.7 Using chemical and enzymatic probing to analyze folding; 6.8 Long-distance interactions and three-dimensional structure prediction; 6.9 Protein structure; 6.10 Secondary structure prediction; 6.11 Three-dimensional modeling based on homologous protein structure; 6.12 Predicting folding; 7: Transcriptome and proteome: macromolecular networks; 7.1 Introduction; 7.2 Post-genomic methods; 7.3 Macromolecular networks; 7.4 Topology of macromolecular networks 7.5 Modularity and dynamics of macromolecular networks7.6 Inference of regulatory networks; 8: Simulation of biological processes in the genome context; 8.1 Types of simulations; 8.2 Prediction and explanation; 8.3 Simulation of molecular networks; 8.4 Generic post-genomic simulators; Index |
| Record Nr. | UNINA-9910877878303321 |
|
Dardel Frederic
|
||
| Chichester, England ; ; Hoboken, NJ, : John Wiley & Sons, c2006 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics and Computational Biology [[electronic resource] ] : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009, Proceedings / / edited by Sanguthevar Rajasekaran
| Bioinformatics and Computational Biology [[electronic resource] ] : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009, Proceedings / / edited by Sanguthevar Rajasekaran |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 |
| Descrizione fisica | 1 online resource (XIV, 450 p.) |
| Disciplina | 570 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computers Data mining Bioinformatics Artificial intelligence Information storage and retrieval Life Sciences, general Theory of Computation Data Mining and Knowledge Discovery Computational Biology/Bioinformatics Artificial Intelligence Information Storage and Retrieval |
| Soggetto genere / forma |
Kongress.
New Orleans (La., 2009) |
| ISBN | 3-642-00727-9 |
| Classificazione |
BIO 110f
BIO 180f DAT 718f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Talks -- Association Analysis Techniques for Bioinformatics Problems -- Analyzing and Interrogating Biological Networks (Abstract) -- From Architecture to Function (and Back) in Bio-networks -- A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants -- Assembly of Large Genomes from Paired Short Reads -- Amino Acid Classification and Hash Seeds for Homology Search -- Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads -- Gene Networks Viewed through Two Models -- Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper -- The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning -- Refereed Papers -- RNA Pseudoknot Folding through Inference and Identification Using TAGRNA -- Comparing Bacterial Genomes by Searching Their Common Intervals -- Generalized Binary Tanglegrams: Algorithms and Applications -- Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data -- Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding -- A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets -- Computational Protocol for Screening GPI-anchored Proteins -- Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors -- An Agent-Based Model of Solid Tumor Progression -- Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma -- Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow Approach -- Biclustering Expression Data Based on Expanding Localized Substructures -- Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction -- Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical Encoding -- The Impact of Gene Selection on Imbalanced Microarray Expression Data -- Spatial Information and Boolean Genetic Regulatory Networks -- Modeling of Genetic Regulatory Network in Stochastic ?-Calculus -- fMRI Activation Detection by MultiScale Hidden Markov Model -- cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models -- A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments -- A Fitness Distance Correlation Measure for Evolutionary Trees -- Alignment and Analysis of Closely Related Genomes -- Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements -- Multiple Sequence Alignment System for Pyrosequencing Reads -- A Bayesian Approach to High-Throughput Biological Model Generation -- Parallel Selection of Informative Genes for Classification -- Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling Pathways -- GridSPiM: A Framework for Simple Locality and Containment in the Stochastic ?-Calculus -- Mutual Information Based Extrinsic Similarity for Microarray Analysis -- Graph Spectral Approach for Identifying Protein Domains. |
| Record Nr. | UNISA-996466019303316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics and Computational Biology : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings / / Sanguthevar Rajasekaran (ed.)
| Bioinformatics and Computational Biology : First International Conference, BICoB 2009, New Orleans, LA, USA, April 8-10, 2009. Proceedings / / Sanguthevar Rajasekaran (ed.) |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin ; ; Heidelberg, : Springer, c2009 |
| Descrizione fisica | 1 online resource (XIV, 450 p.) |
| Disciplina | 570 |
| Altri autori (Persone) | RajasekaranSanguthevar |
| Collana |
Lecture notes in computer science
Lecture notes in bioinformatics |
| Soggetto topico |
Bioinformatics
Computational biology |
| ISBN | 3-642-00727-9 |
| Classificazione |
BIO 110f
BIO 180f DAT 718f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Talks -- Association Analysis Techniques for Bioinformatics Problems -- Analyzing and Interrogating Biological Networks (Abstract) -- From Architecture to Function (and Back) in Bio-networks -- A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants -- Assembly of Large Genomes from Paired Short Reads -- Amino Acid Classification and Hash Seeds for Homology Search -- Genotype and Haplotype Reconstruction from Low-Coverage Short Sequencing Reads -- Gene Networks Viewed through Two Models -- Identifying Evolutionarily Conserved Protein Interaction Modules Using GraphHopper -- The 2-Interval Pattern Matching Problems and Its Application to ncRNA Scanning -- Refereed Papers -- RNA Pseudoknot Folding through Inference and Identification Using TAGRNA -- Comparing Bacterial Genomes by Searching Their Common Intervals -- Generalized Binary Tanglegrams: Algorithms and Applications -- Three-Dimensional Multimodality Modelling by Integration of High-Resolution Interindividual Atlases and Functional MALDI-IMS Data -- Detecting Motifs in a Large Data Set: Applying Probabilistic Insights to Motif Finding -- A Biclustering Method to Discover Co-regulated Genes Using Diverse Gene Expression Datasets -- Computational Protocol for Screening GPI-anchored Proteins -- Towards Large-Scale Molecular Dynamics Simulations on Graphics Processors -- An Agent-Based Model of Solid Tumor Progression -- Deciphering Drug Action and Escape Pathways: An Example on Nasopharyngeal Carcinoma -- Selection of Multiple SNPs in Case-Control Association Study Using a Discretized Network Flow Approach -- Biclustering Expression Data Based on Expanding Localized Substructures -- Constrained Fisher Scores Derived from Interaction Profile Hidden Markov Models Improve Protein to Protein Interaction Prediction -- Improving Protein Localization Prediction Using Amino Acid Group Based Physichemical Encoding -- The Impact of Gene Selection on Imbalanced Microarray Expression Data -- Spatial Information and Boolean Genetic Regulatory Networks -- Modeling of Genetic Regulatory Network in Stochastic ?-Calculus -- fMRI Activation Detection by MultiScale Hidden Markov Model -- cnF2freq: Efficient Determination of Genotype and Haplotype Probabilities in Outbred Populations Using Markov Models -- A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments -- A Fitness Distance Correlation Measure for Evolutionary Trees -- Alignment and Analysis of Closely Related Genomes -- Computational Prediction of Genes Translationally Regulated by Cytoplasmic Polyadenylation Elements -- Multiple Sequence Alignment System for Pyrosequencing Reads -- A Bayesian Approach to High-Throughput Biological Model Generation -- Parallel Selection of Informative Genes for Classification -- Simulation Methods in Uncovering New Regulatory Mechanisms in Signaling Pathways -- GridSPiM: A Framework for Simple Locality and Containment in the Stochastic ?-Calculus -- Mutual Information Based Extrinsic Similarity for Microarray Analysis -- Graph Spectral Approach for Identifying Protein Domains. |
| Altri titoli varianti | BICoB 2009 |
| Record Nr. | UNINA-9910483269603321 |
| Berlin ; ; Heidelberg, : Springer, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Comparative Genomics [[electronic resource] ] : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009, Proceedings / / edited by Francesca D. Ciccarelli, István Miklós
| Comparative Genomics [[electronic resource] ] : International Workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009, Proceedings / / edited by Francesca D. Ciccarelli, István Miklós |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 |
| Descrizione fisica | 1 online resource (VIII, 241 p.) |
| Disciplina | 570 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Bioinformatics Bioinformatics Computational biology Computer science—Mathematics Life Sciences, general Computational Biology/Bioinformatics Computer Appl. in Life Sciences Symbolic and Algebraic Manipulation Discrete Mathematics in Computer Science |
| Soggetto genere / forma |
Budapest (2009)
Kongress. |
| ISBN | 3-642-04744-0 |
| Classificazione |
BIO 110f
BIO 180f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods -- Natural Parameter Values for Generalized Gene Adjacency -- Parking Functions, Labeled Trees and DCJ Sorting Scenarios -- Counting All DCJ Sorting Scenarios -- Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction -- Finding Nested Common Intervals Efficiently -- DCJ Median Problems on Linear Multichromosomal Genomes: Graph Representation and Fast Exact Solutions -- Rearrangement Models and Single-Cut Operations -- Aligning Two Genomic Sequences That Contain Duplications -- Inferring the Recent Duplication History of a Gene Cluster -- Pseudo Boolean Programming for Partially Ordered Genomes -- Computing the Summed Adjacency Disruption Number between Two Genomes with Duplicate Genes Using Pseudo-Boolean Optimization -- Reconstructing Histories of Complex Gene Clusters on a Phylogeny -- Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples -- Whole-Genome Analysis of Gene Conversion Events -- A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances -- Comparative Genomics and Extensive Recombinations in Phage Communities -- Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana -- Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets. |
| Record Nr. | UNISA-996465660703316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Comparative genomics : international workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009 : proceedings / / Francesca D. Ciccarelli, Istvan Miklos (eds.)
| Comparative genomics : international workshop, RECOMB-CG 2009, Budapest, Hungary, September 27-29, 2009 : proceedings / / Francesca D. Ciccarelli, Istvan Miklos (eds.) |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin ; ; New York, : Springer, c2009 |
| Descrizione fisica | 1 online resource (VIII, 241 p.) |
| Disciplina | 570 |
| Altri autori (Persone) |
CiccarelliFrancesca D
MiklosIstvan |
| Collana | Lecture notes in computer science,Lecture notes in bioinformatics |
| Soggetto topico |
Bioinformatics
Computational biology Gene mapping - Statistical methods Genomics Physiology, Comparative |
| ISBN | 3-642-04744-0 |
| Classificazione |
BIO 110f
BIO 180f SS 4800 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods -- Natural Parameter Values for Generalized Gene Adjacency -- Parking Functions, Labeled Trees and DCJ Sorting Scenarios -- Counting All DCJ Sorting Scenarios -- Minimal Conflicting Sets for the Consecutive Ones Property in Ancestral Genome Reconstruction -- Finding Nested Common Intervals Efficiently -- DCJ Median Problems on Linear Multichromosomal Genomes: Graph Representation and Fast Exact Solutions -- Rearrangement Models and Single-Cut Operations -- Aligning Two Genomic Sequences That Contain Duplications -- Inferring the Recent Duplication History of a Gene Cluster -- Pseudo Boolean Programming for Partially Ordered Genomes -- Computing the Summed Adjacency Disruption Number between Two Genomes with Duplicate Genes Using Pseudo-Boolean Optimization -- Reconstructing Histories of Complex Gene Clusters on a Phylogeny -- Co-evolutionary Models for Reconstructing Ancestral Genomic Sequences: Computational Issues and Biological Examples -- Whole-Genome Analysis of Gene Conversion Events -- A Statistically Fair Comparison of Ancestral Genome Reconstructions, Based on Breakpoint and Rearrangement Distances -- Comparative Genomics and Extensive Recombinations in Phage Communities -- Properties of Sequence Conservation in Upstream Regulatory and Protein Coding Sequences among Paralogs in Arabidopsis thaliana -- Transcription Factor Binding Probabilities in Orthologous Promoters: An Alignment-Free Approach to the Inference of Functional Regulatory Targets. |
| Altri titoli varianti | RECOMB-CG 2009 |
| Record Nr. | UNINA-9910484447203321 |
| Berlin ; ; New York, : Springer, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Modern genome annotation [[electronic resource] ] : the BioSapiens Network / / Dmitrij Frishman, Alfonso Valencia, editors
| Modern genome annotation [[electronic resource] ] : the BioSapiens Network / / Dmitrij Frishman, Alfonso Valencia, editors |
| Edizione | [1st ed. 2008.] |
| Pubbl/distr/stampa | Wien ; ; New York, : Springer, c2009 |
| Descrizione fisica | 1 online resource (506 p.) |
| Disciplina | 572.80285 |
| Altri autori (Persone) |
FrishmanDmitrij
ValenciaAlfonso |
| Soggetto topico |
Bioinformatics
Human genome |
| ISBN |
1-282-50900-4
9786612509001 3-211-75123-8 |
| Classificazione |
BIO 110f
BIO 180f |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- Gene definition -- State of the art in eukaryotic gene prediction -- Quality control of gene predictions -- Gene regulation and expression -- Evaluating the prediction of cis-acting regulatory elements in genome sequences -- A biophysical approach to large-scale protein-DNA binding data -- From gene expression profiling to gene regulation -- Annotation and genetics -- Annotation, genetics and transcriptomics -- Functional annotation of proteins -- Resources for functional annotation -- Annotating bacterial genomes -- Data mining in genome annotation -- Modern genome annotation: the BioSapiens network -- Structure to function -- Harvesting the information from a family of proteins -- Protein structure prediction -- Structure prediction of globular proteins -- The state of the art of membrane protein structure prediction: from sequence to 3D structure -- Protein-protein complexes, pathways and networks -- Computational analysis of metabolic networks -- Protein-protein interactions: analysis and prediction -- Infrastructure for distributed protein annotation -- Infrastructure for distributed protein annotation -- Applications -- Viral bioinformatics -- Alternative splicing in the ENCODE protein complement. |
| Record Nr. | UNINA-9910778446703321 |
| Wien ; ; New York, : Springer, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Modern genome annotation : the BioSapiens Network / / Dmitrij Frishman, Alfonso Valencia, editors
| Modern genome annotation : the BioSapiens Network / / Dmitrij Frishman, Alfonso Valencia, editors |
| Edizione | [1st ed. 2008.] |
| Pubbl/distr/stampa | Wien ; ; New York, : Springer, c2009 |
| Descrizione fisica | 1 online resource (506 p.) |
| Disciplina | 572.80285 |
| Altri autori (Persone) |
FrishmanDmitrij
ValenciaAlfonso |
| Soggetto topico |
Bioinformatics
Human genome |
| ISBN |
1-282-50900-4
9786612509001 3-211-75123-8 |
| Classificazione |
BIO 110f
BIO 180f |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- BIOSAPIENS: A European Network of Excellence to develop genome annotation resources -- Gene definition -- State of the art in eukaryotic gene prediction -- Quality control of gene predictions -- Gene regulation and expression -- Evaluating the prediction of cis-acting regulatory elements in genome sequences -- A biophysical approach to large-scale protein-DNA binding data -- From gene expression profiling to gene regulation -- Annotation and genetics -- Annotation, genetics and transcriptomics -- Functional annotation of proteins -- Resources for functional annotation -- Annotating bacterial genomes -- Data mining in genome annotation -- Modern genome annotation: the BioSapiens network -- Structure to function -- Harvesting the information from a family of proteins -- Protein structure prediction -- Structure prediction of globular proteins -- The state of the art of membrane protein structure prediction: from sequence to 3D structure -- Protein-protein complexes, pathways and networks -- Computational analysis of metabolic networks -- Protein-protein interactions: analysis and prediction -- Infrastructure for distributed protein annotation -- Infrastructure for distributed protein annotation -- Applications -- Viral bioinformatics -- Alternative splicing in the ENCODE protein complement. |
| Record Nr. | UNINA-9910817491003321 |
| Wien ; ; New York, : Springer, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Systems biology and synthetic biology [[electronic resource] /] / edited by Pengcheng Fu, Sven Panke
| Systems biology and synthetic biology [[electronic resource] /] / edited by Pengcheng Fu, Sven Panke |
| Pubbl/distr/stampa | Hoboken, N.J., : John Wiley & Sons, c2009 |
| Descrizione fisica | 1 online resource (674 p.) |
| Disciplina |
572.838
620.8 660.6 |
| Altri autori (Persone) |
FuPengcheng
PankeSven |
| Soggetto topico |
Biotechnology
Genetic engineering Biological systems |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-282-28012-0
9786612280122 0-470-43798-7 0-470-43797-9 |
| Classificazione |
BIO 180f
CIT 972f WD 9200 WH 2000 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
SYSTEMS BIOLOGY AND SYNTHETIC BIOLOGY; CONTENTS; Foreword; Contributors; 1 Introduction; 2 Basics of Molecular Biology, Genetic Engineering, and Metabolic Engineering; 3 High-Throughput Technologies and Functional Genomics; 4 Genomic Signal Processing of DNA Microarray Data for the Enhanced Prediction of Axillary Lymph Node Status of Breast Cancer Tumors; 5 Recombinant Genomes: Novel Resources for Systems Biology and Synthetic Biology; 6 In silico Genome-Scale Metabolic Models: The Constraint-Based Approach and its Applications
7 Mathematical Modeling of Genetic Regulatory Networks: Stress Responses in Escherichia coli8 Synthetic Life: Ethobricks for a New Biology; 9 Yeast as a Prototype for Systems Biology; 10 Construction and Applications of Genome-Scale in silico Metabolic Models for Strain Improvement; 11 Synthetic Biology: Putting Engineering into Bioengineering; 12 Rationales of Gene Design and de novo Gene Construction; 13 Self-Replication in Chemistry and Biology; 14 The Synthetic Approach for Regulatory and Metabolic Circuits; 15 Synthetic Gene Networks 16 The Theory of Biological Robustness and its Implication to Cancer17 Nucleic Acid Engineering; 18 Potential Applications of Synthetic Biology in Marine Microbial Functional Ecology and Biotechnology; 19 On Fundamental Implications of Systems and Synthetic Biology; 20 Outstanding Issues in Systems and Synthetic Biology; Index |
| Record Nr. | UNINA-9910139780803321 |
| Hoboken, N.J., : John Wiley & Sons, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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