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Diatom Cultivation for Biofuel, Food and High-Value Products
| Diatom Cultivation for Biofuel, Food and High-Value Products |
| Autore | Vinayak Vandana |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Newark : , : John Wiley & Sons, Incorporated, , 2025 |
| Descrizione fisica | 1 online resource (441 pages) |
| Disciplina | 579.85 |
| Altri autori (Persone) | GordonRichard |
| Collana | Diatoms: Biology and Applications Series |
| ISBN |
9781394174980
1394174985 9781394174966 1394174969 9781394174973 1394174977 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9911020177203321 |
Vinayak Vandana
|
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| Newark : , : John Wiley & Sons, Incorporated, , 2025 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Diatom gliding motility / / edited by Stanley A. Cohn, Kalina M. Manoylov, Richard Gordon
| Diatom gliding motility / / edited by Stanley A. Cohn, Kalina M. Manoylov, Richard Gordon |
| Pubbl/distr/stampa | Hoboken, New Jersey ; ; Beverly, Massachusetts : , : Scrivener Publishing : , : Wiley, , [2021] |
| Descrizione fisica | 1 online resource (480 pages) |
| Disciplina | 579.85 |
| Soggetto topico | Diatoms |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-119-52657-4
1-119-52648-5 1-119-52660-4 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910555253803321 |
| Hoboken, New Jersey ; ; Beverly, Massachusetts : , : Scrivener Publishing : , : Wiley, , [2021] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Diatom gliding motility / / edited by Stanley A. Cohn, Kalina M. Manoylov, Richard Gordon
| Diatom gliding motility / / edited by Stanley A. Cohn, Kalina M. Manoylov, Richard Gordon |
| Pubbl/distr/stampa | Hoboken, New Jersey ; ; Beverly, Massachusetts : , : Scrivener Publishing : , : Wiley, , [2021] |
| Descrizione fisica | 1 online resource (480 pages) |
| Disciplina | 579.85 |
| Soggetto topico | Diatoms |
| ISBN |
1-119-52657-4
1-119-52648-5 1-119-52660-4 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910830907603321 |
| Hoboken, New Jersey ; ; Beverly, Massachusetts : , : Scrivener Publishing : , : Wiley, , [2021] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Diatom morphogenesis / / edited by Joseph Seckbach, Vadim V. Annenkov, Richard Gordon
| Diatom morphogenesis / / edited by Joseph Seckbach, Vadim V. Annenkov, Richard Gordon |
| Pubbl/distr/stampa | Hoboken, NJ : , : John Wiley & Sons, Inc., , 2022 |
| Descrizione fisica | 1 online resource (448 pages) |
| Disciplina | 579.85 |
| Collana | Diatoms: Biology and Applications |
| Soggetto topico |
Diatoms
Morphogenesis |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-119-48813-3
1-119-48817-6 1-119-48819-2 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover -- Half-Title Page -- Series Page -- Title Page -- Copyright Page -- Contents -- Preface -- Part 1: General Issues -- 1 Introduction for a Tutorial on Diatom Morphology -- 1.1 Diatoms in Brief -- 1.2 Tools to Explore Diatom Frustule Morphology -- 1.3 Diatom Frustule 3D Reconstruction -- 1.3.1 Recommended Steps to Understand the Complex Diatom Morphology: A Guide for Beginners -- 1.4 Conclusion -- Acknowledgements -- References -- 2 The Uncanny Symmetry of Some Diatoms and Not of Others: A Multi-Scale Morphological Characteristic and a Puzzle for Morphogenesis* -- 2.1 Introduction -- 2.1.1 Recognition and Symmetry -- 2.1.2 Symmetry and Growth -- 2.1.3 Diatom Pattern Formation, Growth, and Symmetry -- 2.1.4 Diatoms and Uncanny Symmetry -- 2.1.5 Purpose of This Study -- 2.2 Methods -- 2.2.1 Centric Diatom Images Used for Analysis -- 2.2.2 Centric Diatoms, Morphology, and Valve Formation -- 2.2.3 Image Entropy and Symmetry Measurement -- 2.2.4 Image Preparation for Measurement -- 2.2.5 Image Tilt and Slant Measurement Correction for Entropy Values -- 2.2.6 Symmetry Analysis -- 2.2.7 Entropy, Symmetry, and Stability -- 2.2.8 Randomness and Instability -- 2.3 Results -- 2.3.1 Symmetry Analysis -- 2.3.2 Valve Formation-Stability and Instability Analyses -- 2.4 Discussion -- 2.4.1 Symmetry and Scale in Diatoms -- 2.4.2 Valve Formation and Stability -- 2.4.3 Symmetry, Stability and Diatom Morphogenesis -- 2.4.4 Future Research-Symmetry, Stability and Directionality in Diatom Morphogenesis -- References -- 3 On the Size Sequence of Diatoms in Clonal Chains -- 3.1 Introduction -- 3.2 Mathematical Analysis of t he Size Sequence -- 3.2.1 Alternative Method for Calculating the Size Sequence -- 3.2.2 Self-Similarity and Fractal Structure -- 3.2.3 Matching Fragments to a Generation Based on Known SizeIndices of the Fragment.
3.2.4 Sequence of the Differences of the Size Indices -- 3.2.5 Matching Fragments to a Generation Based on Unknown SizeIndices of the Fragment -- 3.2.6 Synchronicity of Cell Divisions -- 3.3 Observations -- 3.3.1 Challenges in Verifying the Sequence of Sizes -- 3.3.2 Materials and Methods -- 3.3.3 Investigation of the Size Sequence of a Eunotia sp. -- 3.3.4 Synchronicity -- 3.4 Conclusions -- Acknowledgements -- Appendix 3A L-System for the Generation of the Sequence of Differences in Size Indices of Adjacent Diatoms -- Appendix 3B Probability Consideration for Loss of Synchronicity -- References -- 4 Valve Morphogenesis in Amphitetrasantediluviana Ehrenberg -- 4.1 Introduction -- 4.2 Material and Methods -- 4.3 Observations -- 4.3.1 Amphitetras antediluviana Mature Valves -- 4.3.2 Amphitetras antediluviana Forming Valves -- 4.3.3 Amphitetras antediluviana Girdle Band Formation -- 4.4 Conclusion -- Acknowledgments -- References -- Part 2: Simulation -- 5 Geometric Models of Concentric and Spiral Areola Patterns of Centric Diatoms -- 5.1 Introduction -- 5.2 Set of Common Rules Used in the Models -- 5.3 Concentric Pattern of Areolae -- 5.4 Spiral Patterns of Areolae -- 5.4.1 Unidirectional Spiral Pattern -- 5.4.2 Bidirectional Spiral Pattern -- 5.4.3 Common Genesis of Unidirectional and Bidirectional Spiral Patterns -- 5.5 Conversion of an Areolae-Based Model Into a Frame-Based Model -- 5.6 Conclusion -- Acknowledgements -- References -- 6 Diatom Pore Arrays' Periodicities and Symmetries in the Euclidean Plane: Nature Between Perfection and Imperfection -- 6.1 Introduction -- 6.2 Materials and Methods -- 6.2.1 Micrograph Segmentation -- 6.2.2 Two-Dimensional Fast Fourier Analysis and Autocorrelation Function Analysis -- 6.2.3 Lattice Measurements and Recognition -- 6.2.4 Accuracy of 2D ACF-Based Calculations. 6.2.5 The Perfection of the Unit Cell Parameters Between Different Parts (Groups of Pore Arrays) of the Same Valve and the Same Micrograph -- 6.3 Results and Discussion -- 6.3.1 Toward Standardization of the Methodology for the Recognition of 2D Periodicities of Pore Arrays in Diatom Micrographs -- 6.3.1.1 Using Two-Dimensional Fast Fourier Transform Analysis -- 6.3.1.2 Using Two-Dimensional Autocorrelation Function -- 6.3.1.3 The Accuracy of Lattice Parameters' Measurements Using the Proposed 2D ACF Analysis -- 6.3.2 Exploring the Periodicity in Our Studied Micrographs and the Possible Presence of Different Types of 2D Lattices in Diatoms -- 6.3.2.1 Irregular Pore Scattering (Non-Periodic Pores) -- 6.3.2.2 Linear Periodicity of Pores in Striae (1D Periodicity) -- 6.3.2.3 The Different 2D Lattices in Diatom Pore Arrays -- 6.3.3 How Perfectly Can Diatoms Build Their 2D Pore Arrays? -- 6.3.3.1 Variation of the 2D Lattice Within the Connected Pore Array of the Valve -- 6.3.3.2 Comparison of 2D Lattice Parameters and Degree of Perfection of Distinct Pore Array Groups in the Same Micrograph and Va -- 6.3.3.3 The Perfection of 2D Lattices of Diatom Pore Arrays Compared to Perfect (Non-Oblique) 2D Bravais Lattices -- 6.3.4 Planar Symmetry Groups to Describe the Whole Diatom Valve Symmetries and Additionally Describe the Complicated 2D Periodic Pore Arrays' Symmetries -- 6.3.4.1 Rosette Groups -- 6.3.4.2 Frieze Groups -- 6.3.4.3 Wallpaper Groups -- 6.4 Conclusion -- Acknowledgment -- Glossary -- References -- 7 Quantified Ensemble 3D Surface Features Modeled as a Window on Centric Diatom Valve Morphogenesis -- 7.1 Introduction -- 7.1.1 From 3D Surface Morphology to Morphogenesis -- 7.1.2 Geometric Basis of 3D Surface Models and Analysis -- 7.1.3 Differential Geometry of 3D Surface -- 7.1.4 3D Surface Feature Geometry and Morphological Attributes. 7.1.5 Centric Diatom Taxa Used as Exemplars in 3D Surface Models for Morphogenetic Analysis -- 7.1.6 Morphogenetic Descriptors of Centric Diatoms in Valve Formation as Sequential Change in 3D Surface Morphology -- 7.1.7 Purposes of This Study -- 7.2 Methods -- 7.2.1 Measurement of Ensemble Surface Features and 3D Surface Morphology: Derivation and Solution of the Jacobian, Hessian, Laplacian, and Christoffel Symbols -- 7.2.1.1 The Jacobian of 3D Surface Morphology -- 7.2.1.2 Monge Patch -- 7.2.1.3 First and Second Fundamental Forms and Surface Characterization of the Monge Patch -- 7.2.1.4 3D Surface Characterization via Gauss and Weingarten Maps and the Fundamental Forms -- 7.2.1.5 Peaks, Valleys, and Saddles of Surface Morphology and the Hessian -- 7.2.1.6 Smoothness as a Characterization of Surface Morphology and the Laplacian -- 7.2.1.7 Point Connections of 3D Surface Morphology and Christoffel Symbols -- 7.2.1.8 Protocol for Using Centric Diatom 3D Surface Models and Their Ensemble Surface Features in Valve Formation Analysis -- 7.3 Results -- 7.4 Discussion -- 7.4.1 Ensemble Surface Features and Physical Characteristics of Valve Morphogenesis -- 7.4.2 Factors Affecting Valve Formation -- 7.4.3 Diatom Growth Patterns-Buckling and Wave Fronts -- 7.4.4 Valve Formation, Ensemble Surface Features, and Self-Similarity -- 7.4.5 Diatom Morphogenesis: Cytoplasmic Inheritance and Phenotypic Plasticity -- 7.4.6 Phenotypic Variation and Ensemble Surface Features: Epistasis and Canalization -- 7.5 Conclusions -- Acknowledgment -- References -- 8 Buckling: A Geometric and Biophysical Multiscale Feature of Centric Diatom Valve Morphogenesis -- 8.1 Introduction -- 8.2 Purpose of Study -- 8.3 Background: Multiscale Diatom Morphogenesis -- 8.3.1 Valve Morphogenesis-Schemata of Schmid and Volcani and of Hildebrand, Lerch, and Shrestha. 8.3.2 Valve Formation-An Overview at the Microscale -- 8.3.3 Valve Formation-An Overview at the Mesoand Microscale -- 8.3.4 Valve Formation-An Overview at the Mesoand Nanoscale -- 8.4 Biophysics of Diatom Valve Formation and Buckling -- 8.4.1 Buckling as a Multiscale Measure of Valve Formation -- 8.4.2 Valve Formation-Cytoplasmic Features and Buckling -- 8.4.3 Buckling: Microtubule Filaments and Bundles -- 8.4.4 Buckling: Actin Filament Ring -- 8.5 Geometrical and Biophysical Aspects of Buckling and Valve Formation -- 8.5.1 Buckling: Geometry of Valve Formation as a Multiscale Wave Front -- 8.5.2 Buckling: Valve Formation and Hamiltonian Biophysics -- 8.5.3 Buckling: Valve Formation and Deformation Gradients -- 8.5.4 Buckling: Multiscale Measurement With Respect to Valve Formation -- 8.5.5 Buckling: Krylov Methods and Association of Valve Surface Buckling With Microtubule and Actin Buckling -- 8.6 Methods -- 8.6.1 Constructing and Analyzing 3D Valve Surface and 2D Microtubule and Actin Filament Models -- 8.6.2 Krylov Methods: Associating Valve Surface With Microtubule and Actin Filament Buckling -- 8.7 Results -- 8.8 Conclusion -- References -- 9. Are Mantle Profiles of Circular Centric Diatoms a Measure of Buckling Forces During Valve Morphogenesis? -- 9.1 Introduction -- 9.2 Methods -- 9.2.1 Background: Circular Centric 2D Profiles and 3D Surfaces of Revolution -- 9.3 Results -- 9.3.1 Approximate Constant Profile Length Representing Approximate Same Sized Valves -- 9.3.2 Change in Profile Length Representing Size Reduction During Valve Morphogenesis -- 9.3.3 Are Profiles Measures of Buckling Forces During Valve Morphogenesis? -- 9.4 Discussion -- 9.4.1 Laminated Structures and Mantle Buckling Forces Affecting the Valve Profile -- 9.5 Conclusion -- Acknowledgement -- References -- Part 3: Physiology, Biochemistry and Applications. 10 The Effect of the Silica Cell Wall on Diatom Transport and Metabolism*. |
| Record Nr. | UNINA-9910555011303321 |
| Hoboken, NJ : , : John Wiley & Sons, Inc., , 2022 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Diatom morphogenesis / / edited by Joseph Seckbach, Vadim V. Annenkov, Richard Gordon
| Diatom morphogenesis / / edited by Joseph Seckbach, Vadim V. Annenkov, Richard Gordon |
| Pubbl/distr/stampa | Hoboken, NJ : , : John Wiley & Sons, Inc., , 2022 |
| Descrizione fisica | 1 online resource (448 pages) |
| Disciplina | 579.85 |
| Collana | Diatoms: Biology and Applications |
| Soggetto topico |
Diatoms
Morphogenesis |
| ISBN |
1-119-48813-3
1-119-48817-6 1-119-48819-2 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover -- Half-Title Page -- Series Page -- Title Page -- Copyright Page -- Contents -- Preface -- Part 1: General Issues -- 1 Introduction for a Tutorial on Diatom Morphology -- 1.1 Diatoms in Brief -- 1.2 Tools to Explore Diatom Frustule Morphology -- 1.3 Diatom Frustule 3D Reconstruction -- 1.3.1 Recommended Steps to Understand the Complex Diatom Morphology: A Guide for Beginners -- 1.4 Conclusion -- Acknowledgements -- References -- 2 The Uncanny Symmetry of Some Diatoms and Not of Others: A Multi-Scale Morphological Characteristic and a Puzzle for Morphogenesis* -- 2.1 Introduction -- 2.1.1 Recognition and Symmetry -- 2.1.2 Symmetry and Growth -- 2.1.3 Diatom Pattern Formation, Growth, and Symmetry -- 2.1.4 Diatoms and Uncanny Symmetry -- 2.1.5 Purpose of This Study -- 2.2 Methods -- 2.2.1 Centric Diatom Images Used for Analysis -- 2.2.2 Centric Diatoms, Morphology, and Valve Formation -- 2.2.3 Image Entropy and Symmetry Measurement -- 2.2.4 Image Preparation for Measurement -- 2.2.5 Image Tilt and Slant Measurement Correction for Entropy Values -- 2.2.6 Symmetry Analysis -- 2.2.7 Entropy, Symmetry, and Stability -- 2.2.8 Randomness and Instability -- 2.3 Results -- 2.3.1 Symmetry Analysis -- 2.3.2 Valve Formation-Stability and Instability Analyses -- 2.4 Discussion -- 2.4.1 Symmetry and Scale in Diatoms -- 2.4.2 Valve Formation and Stability -- 2.4.3 Symmetry, Stability and Diatom Morphogenesis -- 2.4.4 Future Research-Symmetry, Stability and Directionality in Diatom Morphogenesis -- References -- 3 On the Size Sequence of Diatoms in Clonal Chains -- 3.1 Introduction -- 3.2 Mathematical Analysis of t he Size Sequence -- 3.2.1 Alternative Method for Calculating the Size Sequence -- 3.2.2 Self-Similarity and Fractal Structure -- 3.2.3 Matching Fragments to a Generation Based on Known SizeIndices of the Fragment.
3.2.4 Sequence of the Differences of the Size Indices -- 3.2.5 Matching Fragments to a Generation Based on Unknown SizeIndices of the Fragment -- 3.2.6 Synchronicity of Cell Divisions -- 3.3 Observations -- 3.3.1 Challenges in Verifying the Sequence of Sizes -- 3.3.2 Materials and Methods -- 3.3.3 Investigation of the Size Sequence of a Eunotia sp. -- 3.3.4 Synchronicity -- 3.4 Conclusions -- Acknowledgements -- Appendix 3A L-System for the Generation of the Sequence of Differences in Size Indices of Adjacent Diatoms -- Appendix 3B Probability Consideration for Loss of Synchronicity -- References -- 4 Valve Morphogenesis in Amphitetrasantediluviana Ehrenberg -- 4.1 Introduction -- 4.2 Material and Methods -- 4.3 Observations -- 4.3.1 Amphitetras antediluviana Mature Valves -- 4.3.2 Amphitetras antediluviana Forming Valves -- 4.3.3 Amphitetras antediluviana Girdle Band Formation -- 4.4 Conclusion -- Acknowledgments -- References -- Part 2: Simulation -- 5 Geometric Models of Concentric and Spiral Areola Patterns of Centric Diatoms -- 5.1 Introduction -- 5.2 Set of Common Rules Used in the Models -- 5.3 Concentric Pattern of Areolae -- 5.4 Spiral Patterns of Areolae -- 5.4.1 Unidirectional Spiral Pattern -- 5.4.2 Bidirectional Spiral Pattern -- 5.4.3 Common Genesis of Unidirectional and Bidirectional Spiral Patterns -- 5.5 Conversion of an Areolae-Based Model Into a Frame-Based Model -- 5.6 Conclusion -- Acknowledgements -- References -- 6 Diatom Pore Arrays' Periodicities and Symmetries in the Euclidean Plane: Nature Between Perfection and Imperfection -- 6.1 Introduction -- 6.2 Materials and Methods -- 6.2.1 Micrograph Segmentation -- 6.2.2 Two-Dimensional Fast Fourier Analysis and Autocorrelation Function Analysis -- 6.2.3 Lattice Measurements and Recognition -- 6.2.4 Accuracy of 2D ACF-Based Calculations. 6.2.5 The Perfection of the Unit Cell Parameters Between Different Parts (Groups of Pore Arrays) of the Same Valve and the Same Micrograph -- 6.3 Results and Discussion -- 6.3.1 Toward Standardization of the Methodology for the Recognition of 2D Periodicities of Pore Arrays in Diatom Micrographs -- 6.3.1.1 Using Two-Dimensional Fast Fourier Transform Analysis -- 6.3.1.2 Using Two-Dimensional Autocorrelation Function -- 6.3.1.3 The Accuracy of Lattice Parameters' Measurements Using the Proposed 2D ACF Analysis -- 6.3.2 Exploring the Periodicity in Our Studied Micrographs and the Possible Presence of Different Types of 2D Lattices in Diatoms -- 6.3.2.1 Irregular Pore Scattering (Non-Periodic Pores) -- 6.3.2.2 Linear Periodicity of Pores in Striae (1D Periodicity) -- 6.3.2.3 The Different 2D Lattices in Diatom Pore Arrays -- 6.3.3 How Perfectly Can Diatoms Build Their 2D Pore Arrays? -- 6.3.3.1 Variation of the 2D Lattice Within the Connected Pore Array of the Valve -- 6.3.3.2 Comparison of 2D Lattice Parameters and Degree of Perfection of Distinct Pore Array Groups in the Same Micrograph and Va -- 6.3.3.3 The Perfection of 2D Lattices of Diatom Pore Arrays Compared to Perfect (Non-Oblique) 2D Bravais Lattices -- 6.3.4 Planar Symmetry Groups to Describe the Whole Diatom Valve Symmetries and Additionally Describe the Complicated 2D Periodic Pore Arrays' Symmetries -- 6.3.4.1 Rosette Groups -- 6.3.4.2 Frieze Groups -- 6.3.4.3 Wallpaper Groups -- 6.4 Conclusion -- Acknowledgment -- Glossary -- References -- 7 Quantified Ensemble 3D Surface Features Modeled as a Window on Centric Diatom Valve Morphogenesis -- 7.1 Introduction -- 7.1.1 From 3D Surface Morphology to Morphogenesis -- 7.1.2 Geometric Basis of 3D Surface Models and Analysis -- 7.1.3 Differential Geometry of 3D Surface -- 7.1.4 3D Surface Feature Geometry and Morphological Attributes. 7.1.5 Centric Diatom Taxa Used as Exemplars in 3D Surface Models for Morphogenetic Analysis -- 7.1.6 Morphogenetic Descriptors of Centric Diatoms in Valve Formation as Sequential Change in 3D Surface Morphology -- 7.1.7 Purposes of This Study -- 7.2 Methods -- 7.2.1 Measurement of Ensemble Surface Features and 3D Surface Morphology: Derivation and Solution of the Jacobian, Hessian, Laplacian, and Christoffel Symbols -- 7.2.1.1 The Jacobian of 3D Surface Morphology -- 7.2.1.2 Monge Patch -- 7.2.1.3 First and Second Fundamental Forms and Surface Characterization of the Monge Patch -- 7.2.1.4 3D Surface Characterization via Gauss and Weingarten Maps and the Fundamental Forms -- 7.2.1.5 Peaks, Valleys, and Saddles of Surface Morphology and the Hessian -- 7.2.1.6 Smoothness as a Characterization of Surface Morphology and the Laplacian -- 7.2.1.7 Point Connections of 3D Surface Morphology and Christoffel Symbols -- 7.2.1.8 Protocol for Using Centric Diatom 3D Surface Models and Their Ensemble Surface Features in Valve Formation Analysis -- 7.3 Results -- 7.4 Discussion -- 7.4.1 Ensemble Surface Features and Physical Characteristics of Valve Morphogenesis -- 7.4.2 Factors Affecting Valve Formation -- 7.4.3 Diatom Growth Patterns-Buckling and Wave Fronts -- 7.4.4 Valve Formation, Ensemble Surface Features, and Self-Similarity -- 7.4.5 Diatom Morphogenesis: Cytoplasmic Inheritance and Phenotypic Plasticity -- 7.4.6 Phenotypic Variation and Ensemble Surface Features: Epistasis and Canalization -- 7.5 Conclusions -- Acknowledgment -- References -- 8 Buckling: A Geometric and Biophysical Multiscale Feature of Centric Diatom Valve Morphogenesis -- 8.1 Introduction -- 8.2 Purpose of Study -- 8.3 Background: Multiscale Diatom Morphogenesis -- 8.3.1 Valve Morphogenesis-Schemata of Schmid and Volcani and of Hildebrand, Lerch, and Shrestha. 8.3.2 Valve Formation-An Overview at the Microscale -- 8.3.3 Valve Formation-An Overview at the Mesoand Microscale -- 8.3.4 Valve Formation-An Overview at the Mesoand Nanoscale -- 8.4 Biophysics of Diatom Valve Formation and Buckling -- 8.4.1 Buckling as a Multiscale Measure of Valve Formation -- 8.4.2 Valve Formation-Cytoplasmic Features and Buckling -- 8.4.3 Buckling: Microtubule Filaments and Bundles -- 8.4.4 Buckling: Actin Filament Ring -- 8.5 Geometrical and Biophysical Aspects of Buckling and Valve Formation -- 8.5.1 Buckling: Geometry of Valve Formation as a Multiscale Wave Front -- 8.5.2 Buckling: Valve Formation and Hamiltonian Biophysics -- 8.5.3 Buckling: Valve Formation and Deformation Gradients -- 8.5.4 Buckling: Multiscale Measurement With Respect to Valve Formation -- 8.5.5 Buckling: Krylov Methods and Association of Valve Surface Buckling With Microtubule and Actin Buckling -- 8.6 Methods -- 8.6.1 Constructing and Analyzing 3D Valve Surface and 2D Microtubule and Actin Filament Models -- 8.6.2 Krylov Methods: Associating Valve Surface With Microtubule and Actin Filament Buckling -- 8.7 Results -- 8.8 Conclusion -- References -- 9. Are Mantle Profiles of Circular Centric Diatoms a Measure of Buckling Forces During Valve Morphogenesis? -- 9.1 Introduction -- 9.2 Methods -- 9.2.1 Background: Circular Centric 2D Profiles and 3D Surfaces of Revolution -- 9.3 Results -- 9.3.1 Approximate Constant Profile Length Representing Approximate Same Sized Valves -- 9.3.2 Change in Profile Length Representing Size Reduction During Valve Morphogenesis -- 9.3.3 Are Profiles Measures of Buckling Forces During Valve Morphogenesis? -- 9.4 Discussion -- 9.4.1 Laminated Structures and Mantle Buckling Forces Affecting the Valve Profile -- 9.5 Conclusion -- Acknowledgement -- References -- Part 3: Physiology, Biochemistry and Applications. 10 The Effect of the Silica Cell Wall on Diatom Transport and Metabolism*. |
| Record Nr. | UNINA-9910830739203321 |
| Hoboken, NJ : , : John Wiley & Sons, Inc., , 2022 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Diatom Photosynthesis : From Primary Production to High-Value Molecules
| Diatom Photosynthesis : From Primary Production to High-Value Molecules |
| Autore | Goessling Johannes Wilhelm |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Newark : , : John Wiley & Sons, Incorporated, , 2024 |
| Descrizione fisica | 1 online resource (652 pages) |
| Disciplina | 579.85 |
| Altri autori (Persone) |
SerodioJoão
LavaudJohann |
| Collana | Diatoms: Biology and Applications Series |
| Soggetto topico |
Diatoms
Algae |
| ISBN |
9781119842156
1119842158 9781119842149 111984214X |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover -- Series Page -- Title Page -- Copyright Page -- Dedication Page -- Contents -- Preface -- Acknowledgements -- Part 1: Evolution and Genetics -- Chapter 1 Comparing Diatom Photosynthesis with the Green Lineage: Electron Transport, Carbon Fixation and Metabolism -- Abbreviations -- 1.1 Introduction -- 1.2 Conservation and Diversity within Oxygenic Photosynthesis -- 1.3 Consequences of the Secondary Endosymbiosis and Thylakoid Ultrastructure -- 1.4 Different Modes of Photosynthetic Electron Flows -- 1.4.1 Cyclic Electron Flow Around PSI -- 1.4.2 Water-to-Water Cycles -- 1.4.3 Other AEFs -- 1.5 Regulation of CO2 Concentration, CO2 Fixation and Carbon Metabolism -- 1.5.1 Carbon Fixation, Rubisco and Calvin-Benson-Bassham Cycle -- 1.5.2 Carbon Concentration Mechanisms and Pyrenoid -- 1.5.3 Other Metabolic Pathways in the Plastid -- 1.6 General Response of Photosynthesis to Environmental Stresses -- 1.7 Conclusion -- Acknowledgments -- References -- Chapter 2 Genetic Regulation of Diatom Photosynthesis: Understanding and Exploiting Genetic Diversity -- Abbreviations -- 2.1 Regulation of Photosynthesis -- 2.2 Diatom Genomes -- 2.3 Photosynthetic Components in Diatom Genomes -- 2.4 Responses to Changes in Light Intensity -- 2.5 Circadian Rhythmicity -- 2.6 Responses to Changes in Light Quality -- 2.7 Retrograde Signaling -- 2.8 Gene Editing for Functional Characterization and Commercial Applications -- 2.9 Conclusion -- Acknowledgments -- References -- Chapter 3 Evolution of Plastids and Mitochondria in Diatoms -- 3.1 Introduction -- 3.2 Origin and Evolution of Diatom Plastids -- 3.2.1 Plastid Endosymbioses -- 3.2.2 Origin of Plastids in Diatoms -- 3.2.3 Origin of Mitochondria in Diatoms -- 3.3 Derived States of Diatom Plastids -- 3.3.1 Diatoms as Endosymbionts in Dinoflagellates -- 3.3.2 Reductive Plastid Evolution.
3.4 Consequences of Complex Plastid Acquisition -- 3.4.1 Protein Transport to Plastids and Mitochondria in Diatoms -- 3.4.2 Mosaic Organellar Proteomes of Diatoms -- 3.4.3 Novel Intracellular Distributions of Metabolic Pathways in Diatoms -- 3.5 Conclusions and Outlook -- Acknowledgments -- References -- Chapter 4 Structure and Dynamics of the Diatom Chloroplast -- Abbreviation -- 4.1 Evolution and Structure of Diatom Chloroplasts -- 4.2 Architecture of the Diatom Thylakoid Membrane -- 4.2.1 Role of Lipids in the Architecture of Diatom Thylakoids -- 4.2.2 Role of Photosynthetic Proteins in Shaping the Membrane Structure of Diatoms -- 4.2.2.1 Fucoxanthin Chlorophyll Proteins - Structure and Composition -- 4.2.2.2 PSI and PSII Structures -- 4.2.3 Domain Model of the Diatom Thylakoid Membrane -- 4.3 Molecular Dynamics and Structure of the Diatom Thylakoid Membrane Under Different Light Conditions -- 4.4 Molecular Dynamics and Structure of the Diatom Thylakoid Membrane Under Different Thermal Conditions -- 4.5 Conclusion -- References -- Part 2: Interaction with Light -- Chapter 5 Pigments in Diatoms: Light Absorption and Beyond -- 5.1 Environmental Factors Affect Pigments in Diatoms -- 5.2 Diatoms are Well Adapted to Changing Light Conditions -- 5.3 Photosynthetic Pigments in Diatoms are Chlorophylls and Carotenoids -- 5.4 The Main Pigment in Diatoms - Chlorophyll a Plays a Central Role in Photochemical Energy Conversion -- 5.5 Chlorophyll c Participates in Photosynthesis as an Accessory Pigment -- 5.6 Fucoxanthin-Binding Proteins in Diatoms Play a Special Role -- 5.7 Regulation of Protochlorophyllide Oxidoreductases was Examined in Diatoms but Further Steps of Chlorophyll c Biosynthesis Remain Unclear -- 5.8 Fucoxanthin is the Main Light-Harvesting Carotenoid in Diatom. 5.9 High Bioavailability and Bioactivity of Fucoxanthin Makes It a Desirable Compound Obtained by Extraction -- 5.10 Beneficial Effects of Fucoxanthin are Versatile -- 5.11 Diadinoxanthin and Diatoxanthin are Involved in Cyclic Changes, Ensuring Photoprotection -- 5.12 Diatoms Also Possess the Violaxanthin Cycle, but It is not the First Line of Defense Against Excessive Light Energy -- 5.13 Mechanisms of NPQ in Diatoms are Complex and Differ Depending on Species -- 5.14 Many Carotenogenic Enzymes and Genes in Diatoms Have not yet Been Revealed -- 5.15 Analysis and Production of Diatom Pigments are Challenging Tasks with Promising Prospects -- 5.16 Conclusions -- References -- Chapter 6 Function, Structure and Organization of Light-Harvesting Proteins in Diatoms -- Abbreviations -- 6.1 Introduction -- 6.2 The FCP Proteins -- 6.3 Structure, Pigmentation and Energy Transfer -- 6.4 Macroorganization of FCP-PSI/II Supercomplexes -- 6.5 Role of the Chloroplast Signal Recognition Particle Pathway (CpSRP) -- 6.6 Balancing Light Absorption and Photoprotection -- 6.6.1 Non-Photochemical Quenching (NPQ) -- 6.6.2 Flexibility in Photoprotective Response: Possible Consequence of Light Niche Occupancy -- 6.7 Conclusion -- Acknowledgment -- References -- Chapter 7 Sensing Light Underwater: An Update on Photoreceptors in Diatoms -- Abbreviations -- 7.1 Introduction -- 7.2 Rhodopsins -- 7.3 Phytochromes -- 7.4 Cryptochrome/Photolyase Family -- 7.5 Aureochromes -- 7.6 Conclusion -- Acknowledgments -- References -- Chapter 8 Non-Invasive Biophysical Techniques to Monitor the Structural Plasticity of the Photosynthetic Machinery of Live Diatom Cells -- Abbreviations -- 8.1 Introduction -- 8.2 Circular Dichroism Spectroscopy -- 8.2.1 Intrinsic CD -- 8.2.2 Excitonic CD -- 8.2.3 Psi-Type CD -- 8.2.4 Reorganizations of the Pigment System as Reflected by .CD. 8.3 Small-Angle Neutron Scattering (SANS) -- 8.4 Electrochromic Shift Absorbance Transients -- 8.5 Conclusions and Outlook -- Acknowledgments -- References -- Chapter 9 Hypotheses on Frustule Functionalities: From Single Species Analysis to Systematic Approaches -- 9.1 Introduction -- 9.2 Frustule Fundamentals: Chemistry, Formation, Reproduction -- 9.2.1 Chemical Composition -- 9.2.2 Biosilicification and Frustule Formation -- 9.2.3 Life Cycle and Aging -- 9.3 Examples of Unique Frustule Systems -- 9.3.1 Raphe Systems and Locomotion -- 9.3.2 Other Frustule Structural Features Linked to Secretion -- 9.4 Physicochemical Properties -- 9.4.1 Desiccation in Early Diatoms -- 9.4.2 Nutrient Diffusion and CO2 Uptake -- 9.5 Physical Properties -- 9.5.1 A Protective Armor -- 9.5.2 Pore Filtering of Harmful Agents -- 9.5.3 Ballast and Sinking -- 9.6 Frustule as an Optical System -- 9.6.1 Refractive Index of the Frustule -- 9.6.2 UV Shielding and Wavelength Conversion -- 9.6.3 Optical Properties of Valves -- 9.6.3.1 Lensing and Diffraction Based on Valve Asymmetry -- 9.6.3.2 Waveguiding, Evanescent Field Coupling, and Chloroplast Movement -- 9.6.4 Photonic Crystal Properties in Girdle Bands -- 9.6.5 Taxonomic and Ultrastructural Caveats -- 9.7 Conclusions and Outlook -- Acknowledgments -- References -- Part 3: Primary Production and Ecology -- Chapter 10 Extracellular Polymeric Substance Production by Benthic Pennate Diatoms -- 10.1 Introduction -- 10.2 Types of EPS Produced by Benthic Diatoms -- 10.2.1 Solubility and Molecular Size Characterization of Different EPS -- 10.2.2 Chemical Composition and Structures of EPS -- 10.3 Functions of EPS in Benthic Diatoms in Relation to Chemical Composition -- 10.4 Metabolic Pathways of EPS Production and Regulation in Diatoms -- 10.5 Interactions Between Diatoms, EPS and Bacteria -- 10.6 Future Directions. Acknowledgments -- References -- Chapter 11 Diatom Primary Production in Headwater Streams: A Limited but Essential Process -- 11.1 Ecological Relevance of Headwater Stream Ecosystems -- 11.2 Diatom Primary Production is Highly Constrained in Headwater Streams -- 11.2.1 Role of Abiotic Conditions -- 11.2.2 Effects of Allochthonous Organic Matter Input and Its Decomposers on Diatoms -- 11.3 Diatoms as High-Quality Resources for Other Organisms -- 11.3.1 Diatoms Play an Important Role for Microbial Decomposers -- 11.3.2 Role of Diatoms for Higher Trophic Levels -- 11.4 Anthropogenic Impacts on Diatom Contributions to Headwater Stream Functioning -- 11.5 Headwater Diatom Community Functioning is Supported by Unique Biodiversity -- 11.6 Conclusion and Perspectives -- Acknowledgment -- References -- Chapter 12 Present and Future Perspectives for Bioassessment of Running Water Using Diatoms -- 12.1 Introduction -- 12.2 Potential of Diatoms as Indicators in Running Water Quality Assessment -- 12.3 Water Quality Assessment Methods -- 12.3.1 Standardizing Diatom Metrics for Consistent and Unified Application in the Bioassessment of Running Waters -- 12.3.2 Predictive Models -- 12.3.3 Morphology-Based Methods -- 12.4 Molecular-Based Methods -- 12.4.1 Environmental DNA (eDNA) and Metabarcoding -- 12.4.2 Metabarcoding Workflow and Main Biases -- 12.5 Transitioning from Morphology-Based to eDNA-Based Biomonitoring: Available Options -- 12.5.1 Taxonomy Assignment Methods -- 12.5.2 Taxonomy-Free Approaches -- 12.5.3 Enhancing Bioassessment through the Integration of Molecular Data -- 12.6 Conclusions -- References -- Chapter 13 Photosynthetic and Growth Responses of Planktonic Diatoms to Ocean Global Changes -- 13.1 Introduction -- 13.2 The Effects of Elevated CO2 and Ocean Acidification -- 13.3 The Effects of Ocean Warming -- 13.4 The Effects of UVR. 13.5 Combined Effects of Ocean Acidification and Warming. |
| Record Nr. | UNINA-9911020153903321 |
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Goessling Johannes Wilhelm
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| Newark : , : John Wiley & Sons, Incorporated, , 2024 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Diatoms : fundamentals and applications / / edited by Joseph Seckbach and Richard Gordon
| Diatoms : fundamentals and applications / / edited by Joseph Seckbach and Richard Gordon |
| Pubbl/distr/stampa | Beverly, Massachusetts, USA : , : Scrivener Publishing : , : Wiley, , 2019 |
| Descrizione fisica | 1 online resource (825 pages) |
| Disciplina | 579.85 |
| Collana | THEi Wiley ebooks. |
| Soggetto topico | Diatoms |
| ISBN |
1-119-37073-6
1-119-37074-4 1-119-37072-8 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910555185503321 |
| Beverly, Massachusetts, USA : , : Scrivener Publishing : , : Wiley, , 2019 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Diatoms : fundamentals and applications / / edited by Joseph Seckbach and Richard Gordon
| Diatoms : fundamentals and applications / / edited by Joseph Seckbach and Richard Gordon |
| Pubbl/distr/stampa | Beverly, Massachusetts, USA : , : Scrivener Publishing : , : Wiley, , 2019 |
| Descrizione fisica | 1 online resource (825 pages) |
| Disciplina | 579.85 |
| Collana | THEi Wiley ebooks. |
| Soggetto topico | Diatoms |
| ISBN |
1-119-37073-6
1-119-37074-4 1-119-37072-8 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910807612903321 |
| Beverly, Massachusetts, USA : , : Scrivener Publishing : , : Wiley, , 2019 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
The Mathematical Biology of Diatoms / / edited by Janice L. Pappas
| The Mathematical Biology of Diatoms / / edited by Janice L. Pappas |
| Pubbl/distr/stampa | Hoboken, NJ : , : John Wiley & Sons, Inc. and Scrivener Publishing LLC, , [2023] |
| Descrizione fisica | 1 online resource (473 pages) |
| Disciplina | 579.85 |
| Collana | Diatoms |
| Soggetto topico | Diatoms |
| ISBN |
1-119-75193-4
1-119-75192-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover -- Title Page -- Copyright Page -- Contents -- List of Figures -- List of Tables -- Preface -- Part I: Diatom Form and Size Dynamics -- Chapter 1 Modeling the Stiffness of Diploneis Species Based on Geometry of the Frustule Cut with Focused Ion Beam Technology -- 1.1 Introduction -- 1.2 Material and Methods -- 1.2.1 Focused Ion Beam (FIB) Milling -- 1.2.2 Modeling -- 1.3 Results -- 1.3.1 FIB Processing -- 1.3.2 Modeling -- 1.4 Discussion -- 1.4.1 Practical Meaning of the Frustule Geometric Characters -- 1.4.2 Documenting the Mechanical Strength of the Diatom Frustule -- Acknowledgments -- References -- Chapter 2 Size-Resolved Modeling of Diatom Populations: Old Findings and New Insights -- 2.1 Introduction -- 2.2 The MacDonald-Pfitzer Rule and the Need for Matrix Descriptions -- 2.3 Cardinal Points and Cycle Lengths -- 2.3.1 Considered Cardinal Parameters -- 2.3.2 Factors Determining Cardinal Points -- 2.3.3 Experimental Data -- 2.4 Asymmetry, Delay and Fibonacci Growth -- 2.4.1 The Müller Model -- 2.4.2 The Laney Model -- 2.5 Continuous vs. Discrete Modeling -- 2.5.1 Discrete Dynamical Systems -- 2.5.2 The Perron-Frobenius Theorem -- 2.5.3 Continuous Dynamical Systems -- 2.5.4 Extensions and Generalizations -- 2.5.5 Individual-Based Models -- 2.6 Simulation Models -- 2.6.1 The Schwarz et al. Model -- 2.6.2 The D'Alelio et al. Model -- 2.6.3 The Hense-Beckmann Model -- 2.6.4 The Terzieva-Terziev Model -- 2.6.5 The Fuhrmann-Lieker et al. Model -- 2.7 Oscillatory Behavior -- 2.7.1 Reproduction of Experimental Data -- 2.7.2 Coupling to External Rhythms -- 2.8 Conclusion -- Acknowledgment -- References -- Chapter 3 On the Mathematical Description of Diatom Algae: From Siliceous Exoskeleton Structure and Properties to Colony Growth Kinetics, and Prospective Nanoengineering Applications -- 3.1 Introduction.
3.2 Hierarchical Structuring of Matter: Diatom Algae and the Bio-Assisted Nanostructured Additive Manufacturing Paradigm -- 3.3 Structural Design of Diatom Frustules -- 3.4 Mechanical Performance of Diatom Frustules - Experimental Characterization -- 3.4.1 Nanoindentation Testing of Diatom Frustules -- 3.4.2 AFM Studies of Diatom Frustules -- 3.5 Engineering Applications of Diatomaceous Earth -- 3.6 NEMS/MEMS Perspective -- 3.7 On the Mathematical Description of Self-Organized Diatom Frustule Growth -- 3.8 On the Kinetics of Diatom Colony Growth -- 3.9 Advanced Pattern Analysis of the Hierarchical Structure of Diatom Frustules -- 3.10 Concluding Remarks -- Acknowledgement -- References -- Part II: Diatom Development, Growth and Metabolism -- Chapter 4 Ring to the Linear: Valve Ontogeny Indicates Two Potential Evolutionary Pathways of Core Araphid Diatoms -- 4.1 Introduction -- 4.2 Material and Methods -- 4.2.1 Fragilaria mesolepta -- 4.2.2 Staurosira binodis -- 4.2.3 Induction of Synchronous Division -- 4.2.4 Electron Microscopy -- 4.3 Results -- 4.3.1 Fragilaria mesolepta -- 4.3.2 Staurosira binodis -- 4.4 Discussion -- 4.5 Conclusion -- References -- Chapter 5 Mathematical Basis for Diatom Growth Modeling -- 5.1 Introduction -- 5.2 General Physiology of Diatoms -- 5.3 Mathematical View of Diatom Growth -- 5.4 Physical Basis for Diatom Modeling -- 5.4.1 Diatom Dimensions -- 5.4.2 Ambient Temperature -- 5.4.3 Light Intensity and Duration -- 5.5 Review of Existing Mathematical Models -- 5.5.1 Gompertz Model -- 5.5.2 Monod Model -- 5.5.3 Michaelis-Menten Model -- 5.5.4 Droop Model -- 5.5.5 Aquaphy Model -- 5.5.6 Mechanistic Model -- 5.6 Results -- 5.7 Conclusion -- 5.8 Prospects -- References -- Chapter 6 Diatom Growth: How to Improve the Analysis of Noisy Data -- 6.1 Introduction -- 6.1.1 What is a Growth Curve? -- 6.1.2 Why Measure Growth?. 6.1.3 Diatoms and Their Growth -- 6.1.4 Growth Data Analysis and Growth Parameter Estimation -- 6.2 Simulation Trials -- 6.2.1 Methodology for the Simulation Trials -- 6.2.2 Candidate Methods for Estimating the Specific Growth Rate -- 6.2.3 Simulation Trials Results -- 6.2.3.1 Results with Only the Noise Challenge -- 6.2.3.2 Results when Crashing Occurs -- 6.2.3.3 Results when Censoring Occurs -- 6.2.3.4 Overall Results and Ranking of the Methods -- 6.3 Empirical Example -- 6.4 Conclusions and Recommendations -- References -- Chapter 7 Integrating Metabolic Modeling and High-Throughput Data to Characterize Diatoms Metabolism -- 7.1 Introduction -- 7.2 Characterization of Diatom Genomes -- 7.2.1 Available Genomics Data -- 7.2.2 Computational Tools to Allocate Gene Functions by Subcellular Localization -- 7.3 Metabolic Modeling of Diatoms: Data and Outcomes -- 7.3.1 Using Genomic Information to Build Genome-Scale Metabolic Models -- 7.3.2 Comprehensive Diatom Omic Datasets Are Useful to Constrain Metabolic Models -- 7.3.3 Unraveling New Knowledge About Central Carbon Metabolism of Diatoms -- 7.3.4 Light-Driven Metabolism that Enables Acclimation to High Light Intensities -- 7.4 Modeling Applications to Study Bioproduction and Genome Changes in Diatoms -- 7.4.1 Predicting Diatom-Heterotroph Interactions and Horizontal Gene Transfer Using Community Metabolic Models -- 7.4.2 Optimization and Scale-Up of the Production of Valuable Metabolites -- 7.4.3 Potential for the Study of Proteome Allocation in Diatoms -- 7.5 Conclusions -- References -- Part III: Diatom Motility -- Chapter 8 Modeling the Synchronization of the Movement of Bacillaria paxillifer by a Kuramoto Model with Time Delay -- 8.1 Introduction -- 8.2 Materials and Methods -- 8.3 Time Dependence of the Relative Motion of Adjacent Diatoms. 8.4 Modeling Interacting Oscillators of a Bacillaria Colony -- 8.4.1 Observation of the Movement Activity at Uncovered Rhaphes -- 8.4.2 Interaction of Neighboring Diatoms -- 8.4.3 Coupled Oscillators -- 8.5 Kuramoto Model -- 8.5.1 Adaptation of the Kuramoto Model for a Bacillaria Colony -- 8.5.2 Analyses and Approximations -- 8.5.3 Critical Coupling -- 8.5.3.1 Uncoupled Oscillators -- 8.5.3.2 Two Oscillators -- 8.5.3.3 Chains without Retardation -- 8.5.3.4 Identical Oscillator Frequencies and Sufficiently Small Delay -- 8.5.3.5 Remarks on the General Case -- 8.5.4 Statistical Considerations and Monte Carlo Simulations -- 8.5.4.1 Expected Value and Standard Deviation -- 8.5.4.2 Distribution of Critical Coupling -- 8.5.5 Simulation of Non-Synchronous States -- 8.5.5.1 Numerical Integration -- 8.5.5.2 Visualization of the Transient -- 8.5.5.3 Discrete Fourier Transform -- 8.5.6 Coupling to a Periodic Light Source -- 8.6 Discussion -- Acknowledgment -- References -- Chapter 9 The Psychophysical World of the Motile Diatom Bacillaria paradoxa -- Abbreviations -- 9.1 Introduction -- 9.1.1 Aneural Architecture of Bacillaria -- 9.1.2 Aneural Cognition in a Broader Context -- 9.1.3 Psychophysics as Diatom Information Processing -- 9.1.4 Information Processing and Aneural Cognition -- 9.1.5 Hebbian Intelligence and Predictive Processing -- 9.2 Measurement Techniques -- 9.2.1 Weber-Fechner Law -- 9.2.2 Connectionist Network -- 9.2.3 Algorithmic Information -- 9.2.4 Collective Pattern Generator -- 9.2.5 Dynamical States of the CoPG -- 9.3 CPGs vs. CoPGs -- 9.3.1 Potential of Predictive Processing -- 9.3.2 Phase Transitions in Bacillaria Movement -- 9.4 Aneural Regulation -- 9.5 Broader Picture of Intelligence and Emergence -- 9.5.1 Pseudo-Intelligence -- 9.6 Discussion -- Acknowledgments -- References. Chapter 10 Pattern Formation in Diatoma vulgaris Colonies: Observations and Description by a Lindenmayer-System -- 10.1 Introduction -- 10.2 Materials and Methods -- 10.2.1 Cultivation and Recording of Images -- 10.2.2 Formal Notation of Types of Concatenation and Splitting Processes -- 10.2.3 Methods to Observe the Processes -- 10.2.3.1 Basic Options -- 10.2.3.2 Long-Term Observations -- 10.2.3.3 Analysis of Single Images -- 10.3 Results -- 10.3.1 Observation of Elementary Splitting Processes -- 10.3.2 Observation of Synchronism -- 10.3.3 Observation of the Processes and Appearance of Colonies -- 10.3.3.1 Splitting of Elements of Types c and d -- 10.3.3.2 Splitting of Elements of Types a and b - Dynamic Analysis -- 10.3.3.3 Separation of Elements of Types a and b - Static Analysis -- 10.3.3.4 Dependence on Environmental Parameters -- 10.3.4 Theory Formation -- 10.3.4.1 Description of the Asymmetry -- 10.3.4.2 Lindenmayer System -- 10.3.5 Outer Shape of the Colonies -- 10.4 Discussion -- Acknowledgment -- Appendix 10A: Calculation Scheme -- Appendix 10B: Accordance with the D0L-System -- References -- Chapter 11 RAPHE: Simulation of the Dynamics of Diatom Motility at the Molecular Level - The Domino Effect Hydration Model with Concerted Diffusion -- 11.1 Introduction -- 11.2 Parameters -- 11.3 Ising Lattice Modeling -- 11.4 Allowing Bias -- 11.5 Computer Representation -- 11.6 The Roles of the Cell Membrane, Canal Raphes, and the Diatotepum -- 11.7 Raphan and the Raphe -- 11.8 The Jerky Motion of Diatoms -- 11.9 Diffusion and Concerted Diffusion of Raphan -- 11.10 Shear and Janus-Faced Causation: Motility and Raphan Tilting -- 11.11 The Domino Effect Causes Size Independence of Diatom Speed -- 11.12 Quantitating the Swelling of Raphan in the Diatom Trail -- 11.13 A Schematic of Raphan Discharge -- 11.14 Transitions of Raphan. 11.15 The Roles of the Diatom Trail. |
| Record Nr. | UNINA-9910713829503321 |
| Hoboken, NJ : , : John Wiley & Sons, Inc. and Scrivener Publishing LLC, , [2023] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Modern Trends in Diatom Identification : Fundamentals and Applications / / edited by Gabriel Cristóbal, Saúl Blanco, Gloria Bueno
| Modern Trends in Diatom Identification : Fundamentals and Applications / / edited by Gabriel Cristóbal, Saúl Blanco, Gloria Bueno |
| Edizione | [1st ed. 2020.] |
| Pubbl/distr/stampa | Cham : , : Springer International Publishing : , : Imprint : Springer, , 2020 |
| Descrizione fisica | 1 online resource (294 pages) |
| Disciplina | 579.85 |
| Collana | Developments in Applied Phycology |
| Soggetto topico |
Freshwater ecology
Marine ecology Water Hydrology Plants - Evolution Biophysics Freshwater and Marine Ecology Plant Evolution Bioanalysis and Bioimaging Diatomees Taxonomia (Biologia) |
| Soggetto genere / forma | Llibres electrònics |
| ISBN | 3-030-39212-0 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Part 1: Fundamentals -- Chapter 1: Introduction -- Chapter 2: Diatom Classifications: What Purpose Do They Serve? -- Chapter 3: Diatom Taxonomy And Identification Keys -- Chapter 4: Teratologies/Life Cycle/Ecotoxicology -- Part 2: Sensing -- Chapter 5: Microscope Lighting Techniques -- Chapter 6: Microscope Filtering Techniques -- Chapter 7: Automatization Techniques. Slide Scanning -- Part 3: Analysis -- Chapter 8: Segmentation -- Chapter 9: Feature Extraction And Classification -- Chapter 10: Multifocus And Hdr -- Chapter 11: 3d Imaging -- Chapter 12: Morphometrics -- Part 4: Applications -- Chapter 13: Water Quality Assessment -- Chapter 14: Diatoms In Forensic Analysis -- Chapter 15: Benthic Foraminifera And Diatoms As Ecological Indicators. |
| Record Nr. | UNINA-9910409691203321 |
| Cham : , : Springer International Publishing : , : Imprint : Springer, , 2020 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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