Info
- Utilizzare la checkbox di selezione a fianco di ciascun documento per attivare le funzionalità di stampa, invio email, download nei formati disponibili del (i) record.
Bioinformatics algorithms [[electronic resource] ] : techniques and applications / / edited by Ion I. Măndoiu and Alexander Zelikovsky
| Bioinformatics algorithms [[electronic resource] ] : techniques and applications / / edited by Ion I. Măndoiu and Alexander Zelikovsky |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Interscience, c2008 |
| Descrizione fisica | 1 online resource (517 p.) |
| Disciplina | 572.80285 |
| Altri autori (Persone) |
MăndoiuIon
ZelikovskyAlexander |
| Collana | Wiley series on bioinformatics |
| Soggetto topico |
Bioinformatics
Algorithms |
| ISBN |
1-281-23744-2
9786611237448 0-470-25344-4 0-470-25342-8 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
BIOINFORMATICS ALGORITHMS; CONTENTS; Preface; Contributors; 1 Educating Biologists in the 21st Century: Bioinformatics Scientists versus Bioinformatics Technicians; PART I TECHNIQUES; 2 Dynamic Programming Algorithms for Biological Sequence and Structure Comparison; 3 Graph Theoretical Approaches to Delineate Dynamics of Biological Processes; 4 Advances in Hidden Markov Models for Sequence Annotation; 5 Sorting- and FFT-Based Techniques in the Discovery of Biopatterns; 6 A Survey of Seeding for Sequence Alignment; 7 The Comparison of Phylogenetic Networks: Algorithms and Complexity
PART II GENOME AND SEQUENCE ANALYSIS8 Formal Models of Gene Clusters; 9 Integer Linear Programming Techniques for Discovering Approximate Gene Clusters; 10 Efficient Combinatorial Algorithms for DNA Sequence Processing; 11 Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints; 12 Recent Developments in Alignment and Motif Finding for Sequences and Networks; PART III MICROARRAY DESIGN AND DATA ANALYSIS; 13 Algorithms for Oligonucleotide Microarray Layout; 14 Classification Accuracy Based Microarray Missing Value Imputation; 15 Meta-Analysis of Microarray Data PART IV GENETIC VARIATION ANALYSIS16 Phasing Genotypes Using a Hidden Markov Model; 17 Analytical and Algorithmic Methods for Haplotype Frequency Inference: What Do They Tell Us?; 18 Optimization Methods for Genotype Data Analysis in Epidemiological Studies; PART V STRUCTURAL AND SYSTEMS BIOLOGY; 19 Topological Indices in Combinatorial Chemistry; 20 Efficient Algorithms for Structural Recall in Databases; 21 Computational Approaches to Predict Protein-Protein and Domain-Domain Interactions; Index |
| Record Nr. | UNINA-9910145416003321 |
| Hoboken, N.J., : Wiley-Interscience, c2008 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics algorithms [[electronic resource] ] : techniques and applications / / edited by Ion I. Măndoiu and Alexander Zelikovsky
| Bioinformatics algorithms [[electronic resource] ] : techniques and applications / / edited by Ion I. Măndoiu and Alexander Zelikovsky |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Interscience, c2008 |
| Descrizione fisica | 1 online resource (517 p.) |
| Disciplina | 572.80285 |
| Altri autori (Persone) |
MăndoiuIon
ZelikovskyAlexander |
| Collana | Wiley series on bioinformatics |
| Soggetto topico |
Bioinformatics
Algorithms |
| ISBN |
1-281-23744-2
9786611237448 0-470-25344-4 0-470-25342-8 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
BIOINFORMATICS ALGORITHMS; CONTENTS; Preface; Contributors; 1 Educating Biologists in the 21st Century: Bioinformatics Scientists versus Bioinformatics Technicians; PART I TECHNIQUES; 2 Dynamic Programming Algorithms for Biological Sequence and Structure Comparison; 3 Graph Theoretical Approaches to Delineate Dynamics of Biological Processes; 4 Advances in Hidden Markov Models for Sequence Annotation; 5 Sorting- and FFT-Based Techniques in the Discovery of Biopatterns; 6 A Survey of Seeding for Sequence Alignment; 7 The Comparison of Phylogenetic Networks: Algorithms and Complexity
PART II GENOME AND SEQUENCE ANALYSIS8 Formal Models of Gene Clusters; 9 Integer Linear Programming Techniques for Discovering Approximate Gene Clusters; 10 Efficient Combinatorial Algorithms for DNA Sequence Processing; 11 Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints; 12 Recent Developments in Alignment and Motif Finding for Sequences and Networks; PART III MICROARRAY DESIGN AND DATA ANALYSIS; 13 Algorithms for Oligonucleotide Microarray Layout; 14 Classification Accuracy Based Microarray Missing Value Imputation; 15 Meta-Analysis of Microarray Data PART IV GENETIC VARIATION ANALYSIS16 Phasing Genotypes Using a Hidden Markov Model; 17 Analytical and Algorithmic Methods for Haplotype Frequency Inference: What Do They Tell Us?; 18 Optimization Methods for Genotype Data Analysis in Epidemiological Studies; PART V STRUCTURAL AND SYSTEMS BIOLOGY; 19 Topological Indices in Combinatorial Chemistry; 20 Efficient Algorithms for Structural Recall in Databases; 21 Computational Approaches to Predict Protein-Protein and Domain-Domain Interactions; Index |
| Record Nr. | UNINA-9910823387503321 |
| Hoboken, N.J., : Wiley-Interscience, c2008 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics Research and Application [[electronic resource] ] : 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011, Proceedings / / edited by Jianer Chen, Jianxin Wang, Alexander Zelikovsky
| Bioinformatics Research and Application [[electronic resource] ] : 7th International Symposium, ISBRA 2011, Changsha, China, May 27-29, 2011, Proceedings / / edited by Jianer Chen, Jianxin Wang, Alexander Zelikovsky |
| Edizione | [1st ed. 2011.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2011 |
| Descrizione fisica | 1 online resource (XIV, 454 p. 131 illus., 62 illus. in color.) |
| Disciplina | 570.285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Bioinformatics
Data mining Application software Algorithms Pattern recognition Bioinformatics Computational biology Computational Biology/Bioinformatics Data Mining and Knowledge Discovery Information Systems Applications (incl. Internet) Algorithm Analysis and Problem Complexity Pattern Recognition Computer Appl. in Life Sciences |
| ISBN | 3-642-21260-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNISA-996465438703316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2011 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics Research and Applications [[electronic resource] ] : 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9–12, 2023, Proceedings / / edited by Xuan Guo, Serghei Mangul, Murray Patterson, Alexander Zelikovsky
| Bioinformatics Research and Applications [[electronic resource] ] : 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9–12, 2023, Proceedings / / edited by Xuan Guo, Serghei Mangul, Murray Patterson, Alexander Zelikovsky |
| Edizione | [1st ed. 2023.] |
| Pubbl/distr/stampa | Singapore : , : Springer Nature Singapore : , : Imprint : Springer, , 2023 |
| Descrizione fisica | 1 online resource (xiii, 555 pages) : illustrations (chiefly color) |
| Disciplina | 570.285 |
| Altri autori (Persone) |
GuoXuan <1987->
MangulSerghei PattersonMurray ZelikovskyAlexander |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Bioinformatics
Artificial intelligence Computer networks Computer engineering Artificial Intelligence Computer Communication Networks Computer Engineering and Networks |
| ISBN | 981-9970-74-1 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Unveiling the Robustness of Machine Learning Models in Classifying COVID-19 Spike Sequences -- Efficient Sequence Embedding For SARS-CoV-2 Variants Classification -- On Computing the Jaro Similarity Between Two Strings -- Identifying miRNA-disease Associations based on Simple Graph Convolution with DropMessage and Jumping Knowledge -- Reconciling Inconsistent Molecular Structures from Biochemical Databases -- Deep Learning Architectures For the Prediction of YY1-Mediated Chromatin Loops -- Neurogenesis-associated Protein, a Potential Prognostic Biomarker in anti-PD-1 based kidney renal clear cell carcinoma patients therapeutics -- MPFNet: ECG Arrhythmias Classication Based on Multi-Perspective Feature Fusion -- PCPI: Prediction of circRNA and protein interaction using machine learning method -- Radiology Report Generation via Visual Recalibration and Context Gating-aware -- Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics -- TCSA: A Text-guided Cross-view Medical Semantic Alignment Framework for Adaptive Multi-view Visual Representation Learning -- Multi-Class Cancer Classification of Whole Slide Images through Transformer and Multiple Instance Learning -- ricME: long-read based mobile element variant detection using sequence realignment and identity calculation -- scGASI: A graph autoencoder-based single-cell integration clustering method -- ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection -- USTAR: Improved Compression of k-mer Sets with Counters Using De Bruijn Graphs -- Graph-Based Motif Discovery in Mimotope Profiles of Serum Antibody Repertoire -- Sequence-Based Nanobody-Antigen Binding Prediction -- Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions -- The Ordered Covering Problem in Distance Geometry -- Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction -- NeoMS: Identification of Novel MHC-I Peptides with Tandem Mass Spectrometry -- On Sorting by Flanked Transpositions -- Integrative analysis of gene expression and alternative polyadenylation from single-cell RNA-seq data -- SaID: Simulation-aware Image Denoising Pre-trained Model for Cryo-EM Micrographs -- Reducing the impact of domain rearrangement on sequence alignment and phylogeny reconstruction -- Identification and functional annotation of circRNAs in neuroblastoma based on bioinformatics -- SGMDD: Subgraph Neural Network-Based Model for Analyzing Functional Connectivity Signatures of Major Depressive Disorder -- PDB2Vec: Using 3D Structural Information For Improved Protein Analysi -- Hist2Vec: Kernel-Based Embeddings for Biological Sequence Classification -- DCNN: Dual-Level Collaborative Neural Network for Imbalanced Heart Anomaly Detection -- On the Realisability of Chemical Pathways -- A Brief Study of Gene Co-Expression Thresholding Algorithms -- Inferring Boolean Networks from Single-Cell Human Embryo Datasets -- Enhancing t-SNE Performance for Biological Sequencing Data through Kernel Selection -- Genetic Algorithm with Evolutionary Jumps -- HetBiSyn: Predicting Anticancer Synergistic Drug Combinations Featuring Bi-perspective Drug Embedding with Heterogeneous Data -- Clique-based topological characterization of chromatin interaction hubs -- Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms -- Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer -- CSA-MEM: Enhancing Circular DNA Multiple Alignment through Text Indexing Algorithms -- A Convolutional Denoising Autoencoder for Protein Scaffold Filling -- Simulating tumor evolution from scDNA-seq as an accumulation of both SNVs and CNAs -- CHLPCA: Correntropy-Based Hypergraph Regularized Sparse PCA for Single-cell Type Identification.-. |
| Record Nr. | UNISA-996558470303316 |
| Singapore : , : Springer Nature Singapore : , : Imprint : Springer, , 2023 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics Research and Applications [[electronic resource] ] : 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9–12, 2023, Proceedings / / edited by Xuan Guo, Serghei Mangul, Murray Patterson, Alexander Zelikovsky
| Bioinformatics Research and Applications [[electronic resource] ] : 19th International Symposium, ISBRA 2023, Wrocław, Poland, October 9–12, 2023, Proceedings / / edited by Xuan Guo, Serghei Mangul, Murray Patterson, Alexander Zelikovsky |
| Edizione | [1st ed. 2023.] |
| Pubbl/distr/stampa | Singapore : , : Springer Nature Singapore : , : Imprint : Springer, , 2023 |
| Descrizione fisica | 1 online resource (xiii, 555 pages) : illustrations (chiefly color) |
| Disciplina | 570.285 |
| Altri autori (Persone) |
GuoXuan <1987->
MangulSerghei PattersonMurray ZelikovskyAlexander |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Bioinformatics
Artificial intelligence Computer networks Computer engineering Artificial Intelligence Computer Communication Networks Computer Engineering and Networks |
| ISBN | 981-9970-74-1 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Unveiling the Robustness of Machine Learning Models in Classifying COVID-19 Spike Sequences -- Efficient Sequence Embedding For SARS-CoV-2 Variants Classification -- On Computing the Jaro Similarity Between Two Strings -- Identifying miRNA-disease Associations based on Simple Graph Convolution with DropMessage and Jumping Knowledge -- Reconciling Inconsistent Molecular Structures from Biochemical Databases -- Deep Learning Architectures For the Prediction of YY1-Mediated Chromatin Loops -- Neurogenesis-associated Protein, a Potential Prognostic Biomarker in anti-PD-1 based kidney renal clear cell carcinoma patients therapeutics -- MPFNet: ECG Arrhythmias Classication Based on Multi-Perspective Feature Fusion -- PCPI: Prediction of circRNA and protein interaction using machine learning method -- Radiology Report Generation via Visual Recalibration and Context Gating-aware -- Using Generating Functions to Prove Additivity of Gene-Neighborhood Based Phylogenetics -- TCSA: A Text-guided Cross-view Medical Semantic Alignment Framework for Adaptive Multi-view Visual Representation Learning -- Multi-Class Cancer Classification of Whole Slide Images through Transformer and Multiple Instance Learning -- ricME: long-read based mobile element variant detection using sequence realignment and identity calculation -- scGASI: A graph autoencoder-based single-cell integration clustering method -- ABCAE: Artificial Bee Colony Algorithm with Adaptive Exploitation for Epistatic Interaction Detection -- USTAR: Improved Compression of k-mer Sets with Counters Using De Bruijn Graphs -- Graph-Based Motif Discovery in Mimotope Profiles of Serum Antibody Repertoire -- Sequence-Based Nanobody-Antigen Binding Prediction -- Approximating Rearrangement Distances with Replicas and Flexible Intergenic Regions -- The Ordered Covering Problem in Distance Geometry -- Phylogenetic Information as Soft Constraints in RNA Secondary Structure Prediction -- NeoMS: Identification of Novel MHC-I Peptides with Tandem Mass Spectrometry -- On Sorting by Flanked Transpositions -- Integrative analysis of gene expression and alternative polyadenylation from single-cell RNA-seq data -- SaID: Simulation-aware Image Denoising Pre-trained Model for Cryo-EM Micrographs -- Reducing the impact of domain rearrangement on sequence alignment and phylogeny reconstruction -- Identification and functional annotation of circRNAs in neuroblastoma based on bioinformatics -- SGMDD: Subgraph Neural Network-Based Model for Analyzing Functional Connectivity Signatures of Major Depressive Disorder -- PDB2Vec: Using 3D Structural Information For Improved Protein Analysi -- Hist2Vec: Kernel-Based Embeddings for Biological Sequence Classification -- DCNN: Dual-Level Collaborative Neural Network for Imbalanced Heart Anomaly Detection -- On the Realisability of Chemical Pathways -- A Brief Study of Gene Co-Expression Thresholding Algorithms -- Inferring Boolean Networks from Single-Cell Human Embryo Datasets -- Enhancing t-SNE Performance for Biological Sequencing Data through Kernel Selection -- Genetic Algorithm with Evolutionary Jumps -- HetBiSyn: Predicting Anticancer Synergistic Drug Combinations Featuring Bi-perspective Drug Embedding with Heterogeneous Data -- Clique-based topological characterization of chromatin interaction hubs -- Exploring Racial Disparities in Triple-Negative Breast Cancer: Insights from Feature Selection Algorithms -- Deep Learning Reveals Biological Basis of Racial Disparities in Quadruple-Negative Breast Cancer -- CSA-MEM: Enhancing Circular DNA Multiple Alignment through Text Indexing Algorithms -- A Convolutional Denoising Autoencoder for Protein Scaffold Filling -- Simulating tumor evolution from scDNA-seq as an accumulation of both SNVs and CNAs -- CHLPCA: Correntropy-Based Hypergraph Regularized Sparse PCA for Single-cell Type Identification.-. |
| Record Nr. | UNINA-9910747593303321 |
| Singapore : , : Springer Nature Singapore : , : Imprint : Springer, , 2023 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics Research and Applications [[electronic resource] ] : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky
| Bioinformatics Research and Applications [[electronic resource] ] : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky |
| Edizione | [1st ed. 2008.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 |
| Descrizione fisica | 1 online resource (XIX, 510 p.) |
| Disciplina | 570.285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computers Bioinformatics Pattern recognition Data mining Life Sciences, general Theory of Computation Computational Biology/Bioinformatics Computation by Abstract Devices Pattern Recognition Data Mining and Knowledge Discovery |
| ISBN |
1-281-85508-1
3-540-79450-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Keynote Talk: Set-Level Analyses for Genome-Wide Association Data -- Hierarchical Clustering Using Constraints -- The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches -- A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes -- An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic Analysis -- Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences -- Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition -- Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats -- Improved Alignment of Protein Sequences Based on Common Parts -- Invited Keynote Talk: Computing P-Values for Peptide Identifications in Mass Spectrometry -- PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes -- Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure -- Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution -- Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure -- HCV Quasispecies Assembly Using Network Flows -- A Dynamic Programming Algorithm for De Novo Peptide Sequencing with Variable Scoring -- Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies -- Incorporating Literature Knowledge in Bayesian Network for Inferring Gene Networks with Gene Expression Data -- Integrative Network Component Analysis for Regulatory Network Reconstruction -- A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks -- Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph -- Mean Squared Residue Based Biclustering Algorithms -- Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information -- A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution -- Network-Based Inference of Cancer Progression from Microarray Data -- Invited Keynote Talk: Quiet Revolution: Connectivity in the Cancer Research Community -- Wavelet-Based 3-D Multifractal Spectrum with Applications in Breast MRI Images -- Accurate Inverse Consistent Non-rigid Image Registration and Its Application on Automatic Re-contouring -- GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies -- Pattern Matching in RNA Structures -- The Use of a Conformational Alphabet for Fast Alignment of Protein Structures -- On-the-Fly Rotamer Pair Energy Evaluation in Protein Design -- Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling -- Multiple Kernel Support Vector Regression for siRNA Efficacy Prediction -- Hierarchical Clustering Support Vector Machines for Classifying Type-2 Diabetes Patients -- Computational Mutagenesis of E. coli Lac Repressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity -- Evaluating Genetic Algorithms in Protein-Ligand Docking -- A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling -- Evolutionary Algorithm for Feature Subset Selection in Predicting Tumor Outcomes Using Microarray Data -- Incorporating Knowledge of Topology Improves Reconstruction of Interaction Networks from Microarray Data -- Invited Keynote Talk: Data Mining and Statistical Methods for Analyzing Microarray Experiments -- Seven Variations of an Alignment Workflow - An Illustration of Agile Process Design and Management in Bio-jETI -- Supporting Computational Systems Science: Genomic Analysis Tool Federations Using Aspects and AOP -- BioDQ: Data Quality Estimation and Management for Genomics Databases -- Stepped Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis -- Bagging Multiple Comparisons from Microarray Data -- Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products. |
| Record Nr. | UNISA-996465879503316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics Research and Applications : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky
| Bioinformatics Research and Applications : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky |
| Edizione | [1st ed. 2008.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 |
| Descrizione fisica | 1 online resource (XIX, 510 p.) |
| Disciplina | 570.285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computers Bioinformatics Pattern recognition Data mining Life Sciences, general Theory of Computation Computational Biology/Bioinformatics Computation by Abstract Devices Pattern Recognition Data Mining and Knowledge Discovery |
| ISBN |
1-281-85508-1
3-540-79450-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Keynote Talk: Set-Level Analyses for Genome-Wide Association Data -- Hierarchical Clustering Using Constraints -- The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches -- A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes -- An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic Analysis -- Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences -- Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition -- Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats -- Improved Alignment of Protein Sequences Based on Common Parts -- Invited Keynote Talk: Computing P-Values for Peptide Identifications in Mass Spectrometry -- PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes -- Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure -- Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution -- Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure -- HCV Quasispecies Assembly Using Network Flows -- A Dynamic Programming Algorithm for De Novo Peptide Sequencing with Variable Scoring -- Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies -- Incorporating Literature Knowledge in Bayesian Network for Inferring Gene Networks with Gene Expression Data -- Integrative Network Component Analysis for Regulatory Network Reconstruction -- A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks -- Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph -- Mean Squared Residue Based Biclustering Algorithms -- Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information -- A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution -- Network-Based Inference of Cancer Progression from Microarray Data -- Invited Keynote Talk: Quiet Revolution: Connectivity in the Cancer Research Community -- Wavelet-Based 3-D Multifractal Spectrum with Applications in Breast MRI Images -- Accurate Inverse Consistent Non-rigid Image Registration and Its Application on Automatic Re-contouring -- GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies -- Pattern Matching in RNA Structures -- The Use of a Conformational Alphabet for Fast Alignment of Protein Structures -- On-the-Fly Rotamer Pair Energy Evaluation in Protein Design -- Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling -- Multiple Kernel Support Vector Regression for siRNA Efficacy Prediction -- Hierarchical Clustering Support Vector Machines for Classifying Type-2 Diabetes Patients -- Computational Mutagenesis of E. coli Lac Repressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity -- Evaluating Genetic Algorithms in Protein-Ligand Docking -- A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling -- Evolutionary Algorithm for Feature Subset Selection in Predicting Tumor Outcomes Using Microarray Data -- Incorporating Knowledge of Topology Improves Reconstruction of Interaction Networks from Microarray Data -- Invited Keynote Talk: Data Mining and Statistical Methods for Analyzing Microarray Experiments -- Seven Variations of an Alignment Workflow - An Illustration of Agile Process Design and Management in Bio-jETI -- Supporting Computational Systems Science: Genomic Analysis Tool Federations Using Aspects and AOP -- BioDQ: Data Quality Estimation and Management for Genomics Databases -- Stepped Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis -- Bagging Multiple Comparisons from Microarray Data -- Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products. |
| Record Nr. | UNINA-9910484859103321 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics research and applications : third international symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007 : proceedings / / Ion Măndoiu, Alexander Zelikovsky (Eds.)
| Bioinformatics research and applications : third international symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007 : proceedings / / Ion Măndoiu, Alexander Zelikovsky (Eds.) |
| Edizione | [1st ed. 2007.] |
| Pubbl/distr/stampa | Berlin, Germany ; ; New York, New York State : , : Springer, , [2007] |
| Descrizione fisica | 1 online resource (665 p.) |
| Disciplina | 570.285 |
| Collana | Lecture notes in bioinformatics |
| Soggetto topico |
Computational biology
Bioinformatics |
| ISBN | 3-540-72031-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | GFBA: A Biclustering Algorithm for Discovering Value-Coherent Biclusters -- Significance Analysis of Time-Course Gene Expression Profiles -- Data-Driven Smoothness Enhanced Variance Ratio Test to Unearth Responsive Genes in 0-Time Normalized Time-Course Microarray Data -- Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming -- A Multi-Stack Based Phylogenetic Tree Building Method -- A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance -- A Bootstrap Correspondence Analysis for Factorial Microarray Experiments with Replications -- Clustering Algorithms Optimizer: A Framework for Large Datasets -- Ranking Function Based on Higher Order Statistics (RF-HOS) for Two-Sample Microarray Experiments -- Searching for Recombinant Donors in a Phylogenetic Network of Serial Samples -- Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls -- Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood Approach -- Invited Talk: Modern Homology Search -- Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data -- Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods -- An Empirical Comparison of Dimensionality Reduction Methods for Classifying Gene and Protein Expression Datasets -- NEURONgrid: A Toolkit for Generating Parameter-Space Maps Using NEURON in a Grid Environment -- An Adaptive Resolution Tree Visualization of Large Influenza Virus Sequence Datasets -- Wavelet Image Interpolation (WII): A Wavelet-Based Approach to Enhancement of Digital Mammography Images -- High Level Programming Environment System for Protein Structure Data -- Finding Minimal Sets of Informative Genes in Microarray Data -- Noise-Based Feature Perturbation as a Selection Method for Microarray Data -- Efficient Generation of Biologically Relevant Enriched Gene Sets -- Space and Time Efficient Algorithms to Discover Endogenous RNAi Patterns in Complete Genome Data -- A Fast Approximate Covariance-Model-Based Database Search Method for Non-coding RNA -- Extensions of Naive Bayes and Their Applications to Bioinformatics -- The Solution Space of Sorting by Reversals -- A Fast and Exact Algorithm for the Perfect Reversal Median Problem -- Genomic Signatures from DNA Word Graphs -- Enhancing Motif Refinement by Incorporating Comparative Genomics Data -- Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched Regions -- Enhanced Prediction of Cleavage in Bovine Precursor Sequences -- Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome -- The Identification of Antisense Gene Pairs Through Available Software -- Inferring Weak Adaptations and Selection Biases in Proteins from Composition and Substitution Matrices -- Markov Model Variants for Appraisal of Coding Potential in Plant DNA -- Predicting Palmitoylation Sites Using a Regularised Bio-basis Function Neural Network -- A Novel Kernel-Based Approach for Predicting Binding Peptides for HLA Class II Molecules -- A Database for Prediction of Unique Peptide Motifs as Linear Epitopes -- A Novel Greedy Algorithm for the Minimum Common String Partition Problem -- An Efficient Algorithm for Finding Gene-Specific Probes for DNA Microarrays -- Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm -- Cancer Class Discovery Using Non-negative Matrix Factorization Based on Alternating Non-negativity-Constrained Least Squares -- A Support Vector Machine Ensemble for Cancer Classification Using Gene Expression Data -- Combining SVM Classifiers Using Genetic Fuzzy Systems Based on AUC for Gene Expression Data Analysis -- A BP-SCFG Based Approach for RNA Secondary Structure Prediction with Consecutive Bases Dependency and Their Relative Positions Information -- Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice -- Statistical Estimate for the Size of the Protein Structural Vocabulary -- Coclustering Based Parcellation of Human Brain Cortex Using Diffusion Tensor MRI -- An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes -- Using Multi Level Nearest Neighbor Classifiers for G-Protein Coupled Receptor Sub-families Prediction -- Invited Talk: Ab Initio Gene Finding Engines: What Is Under the Hood -- Reconstruction of 3D Structures from Protein Contact Maps -- A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure Prediction -- DNA Sites Buried in Nucleosome Become Accessible at Room Temperature: A Discrete-Event-Simulation Based Modeling Approach -- Comparative Analysis of Gene-Coexpression Networks Across Species -- Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information -- Extending the Calculus of Looping Sequences to Model Protein Interaction at the Domain Level. |
| Record Nr. | UNINA-9910483120303321 |
| Berlin, Germany ; ; New York, New York State : , : Springer, , [2007] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics research and applications : third international symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007 : proceedings / / Ion Măndoiu, Alexander Zelikovsky (Eds.)
| Bioinformatics research and applications : third international symposium, ISBRA 2007, Atlanta, GA, USA, May 7-10, 2007 : proceedings / / Ion Măndoiu, Alexander Zelikovsky (Eds.) |
| Edizione | [1st ed. 2007.] |
| Pubbl/distr/stampa | Berlin, Germany ; ; New York, New York State : , : Springer, , [2007] |
| Descrizione fisica | 1 online resource (665 p.) |
| Disciplina | 570.285 |
| Collana | Lecture notes in bioinformatics |
| Soggetto topico |
Computational biology
Bioinformatics |
| ISBN | 3-540-72031-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | GFBA: A Biclustering Algorithm for Discovering Value-Coherent Biclusters -- Significance Analysis of Time-Course Gene Expression Profiles -- Data-Driven Smoothness Enhanced Variance Ratio Test to Unearth Responsive Genes in 0-Time Normalized Time-Course Microarray Data -- Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming -- A Multi-Stack Based Phylogenetic Tree Building Method -- A New Linear-Time Heuristic Algorithm for Computing the Parsimony Score of Phylogenetic Networks: Theoretical Bounds and Empirical Performance -- A Bootstrap Correspondence Analysis for Factorial Microarray Experiments with Replications -- Clustering Algorithms Optimizer: A Framework for Large Datasets -- Ranking Function Based on Higher Order Statistics (RF-HOS) for Two-Sample Microarray Experiments -- Searching for Recombinant Donors in a Phylogenetic Network of Serial Samples -- Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls -- Estimating Bacterial Diversity from Environmental DNA: A Maximum Likelihood Approach -- Invited Talk: Modern Homology Search -- Statistical Absolute Evaluation of Gene Ontology Terms with Gene Expression Data -- Discovering Relations Among GO-Annotated Clusters by Graph Kernel Methods -- An Empirical Comparison of Dimensionality Reduction Methods for Classifying Gene and Protein Expression Datasets -- NEURONgrid: A Toolkit for Generating Parameter-Space Maps Using NEURON in a Grid Environment -- An Adaptive Resolution Tree Visualization of Large Influenza Virus Sequence Datasets -- Wavelet Image Interpolation (WII): A Wavelet-Based Approach to Enhancement of Digital Mammography Images -- High Level Programming Environment System for Protein Structure Data -- Finding Minimal Sets of Informative Genes in Microarray Data -- Noise-Based Feature Perturbation as a Selection Method for Microarray Data -- Efficient Generation of Biologically Relevant Enriched Gene Sets -- Space and Time Efficient Algorithms to Discover Endogenous RNAi Patterns in Complete Genome Data -- A Fast Approximate Covariance-Model-Based Database Search Method for Non-coding RNA -- Extensions of Naive Bayes and Their Applications to Bioinformatics -- The Solution Space of Sorting by Reversals -- A Fast and Exact Algorithm for the Perfect Reversal Median Problem -- Genomic Signatures from DNA Word Graphs -- Enhancing Motif Refinement by Incorporating Comparative Genomics Data -- Mining Discriminative Distance Context of Transcription Factor Binding Sites on ChIP Enriched Regions -- Enhanced Prediction of Cleavage in Bovine Precursor Sequences -- Invited Talk: A Computational Study of Bidirectional Promoters in the Human Genome -- The Identification of Antisense Gene Pairs Through Available Software -- Inferring Weak Adaptations and Selection Biases in Proteins from Composition and Substitution Matrices -- Markov Model Variants for Appraisal of Coding Potential in Plant DNA -- Predicting Palmitoylation Sites Using a Regularised Bio-basis Function Neural Network -- A Novel Kernel-Based Approach for Predicting Binding Peptides for HLA Class II Molecules -- A Database for Prediction of Unique Peptide Motifs as Linear Epitopes -- A Novel Greedy Algorithm for the Minimum Common String Partition Problem -- An Efficient Algorithm for Finding Gene-Specific Probes for DNA Microarrays -- Multiple Sequence Local Alignment Using Monte Carlo EM Algorithm -- Cancer Class Discovery Using Non-negative Matrix Factorization Based on Alternating Non-negativity-Constrained Least Squares -- A Support Vector Machine Ensemble for Cancer Classification Using Gene Expression Data -- Combining SVM Classifiers Using Genetic Fuzzy Systems Based on AUC for Gene Expression Data Analysis -- A BP-SCFG Based Approach for RNA Secondary Structure Prediction with Consecutive Bases Dependency and Their Relative Positions Information -- Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice -- Statistical Estimate for the Size of the Protein Structural Vocabulary -- Coclustering Based Parcellation of Human Brain Cortex Using Diffusion Tensor MRI -- An Algorithm for Hierarchical Classification of Genes of Prokaryotic Genomes -- Using Multi Level Nearest Neighbor Classifiers for G-Protein Coupled Receptor Sub-families Prediction -- Invited Talk: Ab Initio Gene Finding Engines: What Is Under the Hood -- Reconstruction of 3D Structures from Protein Contact Maps -- A Feature Selection Algorithm Based on Graph Theory and Random Forests for Protein Secondary Structure Prediction -- DNA Sites Buried in Nucleosome Become Accessible at Room Temperature: A Discrete-Event-Simulation Based Modeling Approach -- Comparative Analysis of Gene-Coexpression Networks Across Species -- Comparative Pathway Prediction Via Unified Graph Modeling of Genomic Structure Information -- Extending the Calculus of Looping Sequences to Model Protein Interaction at the Domain Level. |
| Record Nr. | UNISA-996465879003316 |
| Berlin, Germany ; ; New York, New York State : , : Springer, , [2007] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Combinatorial Optimization and Applications [[electronic resource] ] : 12th International Conference, COCOA 2018, Atlanta, GA, USA, December 15-17, 2018, Proceedings / / edited by Donghyun Kim, R. N. Uma, Alexander Zelikovsky
| Combinatorial Optimization and Applications [[electronic resource] ] : 12th International Conference, COCOA 2018, Atlanta, GA, USA, December 15-17, 2018, Proceedings / / edited by Donghyun Kim, R. N. Uma, Alexander Zelikovsky |
| Edizione | [1st ed. 2018.] |
| Pubbl/distr/stampa | Cham : , : Springer International Publishing : , : Imprint : Springer, , 2018 |
| Descrizione fisica | 1 online resource (XIII, 756 p. 179 illus., 96 illus. in color.) |
| Disciplina | 519.64 |
| Collana | Theoretical Computer Science and General Issues |
| Soggetto topico |
Algorithms
Computer science—Mathematics Discrete mathematics Numerical analysis Artificial intelligence—Data processing Computer engineering Computer networks Discrete Mathematics in Computer Science Numerical Analysis Mathematical Applications in Computer Science Data Science Computer Engineering and Networks |
| ISBN | 3-030-04651-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Graph Theory -- Network Flow and Security -- Combinatorial Optimization -- Computational Geometry -- Combinatorial Optimization -- Combinatorial Optimization and Data Structure -- Clustering. |
| Record Nr. | UNISA-996466292003316 |
| Cham : , : Springer International Publishing : , : Imprint : Springer, , 2018 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
