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Metabolomics in practice [[electronic resource] ] : successful strategies to generate and analyze metabolic data / / edited by Michael La<U+00cc>mmerhofer and Wolfram Weckwerth
| Metabolomics in practice [[electronic resource] ] : successful strategies to generate and analyze metabolic data / / edited by Michael La<U+00cc>mmerhofer and Wolfram Weckwerth |
| Pubbl/distr/stampa | Weinheim an der Bergstrasse, Germany, : Wiley-VCH Verlag GmbH, c2013 |
| Descrizione fisica | 1 online resource (443 p.) |
| Disciplina | 572.4 |
| Altri autori (Persone) |
La WeckwerthWolfram |
| Soggetto topico |
Metabolism
Metabolism - Research - Methodology |
| ISBN |
3-527-65586-7
1-299-31354-X 3-527-65589-1 3-527-65588-3 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Metabolomics in Practice; Contents; List of Contributors; Preface; 1 The Sampling and Sample Preparation Problem in Microbial Metabolomics; 1.1 Introduction; 1.2 Microorganisms and Their Properties; 1.3 Sampling Methods; 1.3.1 The Need for Rapid Sampling; 1.3.2 Sampling Systems; 1.4 Quenching; 1.4.1 Quenching Procedures and Their Properties; 1.4.2 Validation of the Quenching Procedure and Minimization of Metabolite Leakage; 1.4.3 Quenching Procedure for Determination of Intracellular Metabolites in the Presence of Extracellular Abundance; 1.4.4 Quenching of Bacteria; 1.5 Metabolite Extraction
1.5.1 Extraction Methods and Their Properties1.5.2 Validation of Extraction Methods for Yeast Metabolomics; 1.6 Application of 13C-Labeled Internal Standards; 1.7 Conclusions; References; 2 Tandem Mass Spectrometry Hyphenated with HPLC and UHPLC for Targeted Metabolomics; 2.1 Introduction; 2.2 LC-MS-Based Targeted Metabolomics; 2.3 Liquid Chromatography; 2.4 Mass Spectrometry; 2.4.1 Ionization Techniques; 2.4.2 Mass Analyzers; 2.5 Sample Preparation; 2.6 Relative and Absolute Quantification; 2.7 Applications; 2.8 Synopsis; References; 3 Uncertainty of Measurement in Quantitative Metabolomics 3.1 Introduction3.1.1 MS-Based Techniques in Metabolomics; 3.1.2 Uncertainty of Measurement in Quantitative Analysis; 3.1.2.1 Definition; 3.1.2.2 Uncertainty Calculation According to the Bottom-Up Approach; 3.2 Uncertainties of Quantitative MS Experiments; 3.2.1 Uncertainties in Sample Preparation; 3.2.1.1 Sampling and Sample Preparation in Metabolite Profiling in Fermentations; 3.2.1.2 Calculation of Sample Preparation Uncertainty for Intracellular Metabolite Quantitation in Yeast: A Practical Example; 3.2.1.3 LC-MS 3.2.2 Uncertainty of Mass Spectrometric Assays (LC-MS and GC-MS Measurements)3.2.2.1 GC-MS; 3.2.2.2 Calculation of Uncertainty for LC-MS Measurements of Cell Extracts: A Practical Example; 3.3 Concluding Remarks; Abbreviations; Acknowledgment; References; 4 Gas Chromatography and Comprehensive Two-Dimensional Gas Chromatography Hyphenated with Mass Spectrometry for Targeted and Nontargeted Metabolomics; 4.1 Introduction and Scope; 4.2 Sample Preparation for GC-Based Metabolite Profiling; 4.3 GC-MS and GC x GC-TOFMS Instrumentation for Metabolomics; 4.4 Data Analysis Strategies and Software 4.5 Illustrative Examples and Concluding RemarksReferences; 5 LC-MS-Based Nontargeted Metabolomics; 5.1 Introduction; 5.2 LC-MS-Based Untargeted Metabolomics; 5.2.1 LC Issues; 5.2.2 Mass Spectrometry; 5.3 Study Design; 5.4 Sample Preparation; 5.5 Analytical Strategies; 5.6 Data Analysis; 5.7 Metabolite Identification; 5.8 Applications; 5.9 Synopsis; References; 6 The Potential of Ultrahigh Resolution MS (FTICR-MS) in Metabolomics; 6.1 Introduction; 6.2 Metabolomics Technologies; 6.3 Principles of FTICR-MS; 6.3.1 Natural Ion Movement Inside an ICR Cell Subjected to Magnetic and Electric Fields 6.3.2 Applied Physical Techniques in FTICR-MS |
| Record Nr. | UNINA-9910141647203321 |
| Weinheim an der Bergstrasse, Germany, : Wiley-VCH Verlag GmbH, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Metabolomics in practice [[electronic resource] ] : successful strategies to generate and analyze metabolic data / / edited by Michael La<U+00cc>mmerhofer and Wolfram Weckwerth
| Metabolomics in practice [[electronic resource] ] : successful strategies to generate and analyze metabolic data / / edited by Michael La<U+00cc>mmerhofer and Wolfram Weckwerth |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Weinheim an der Bergstrasse, Germany, : Wiley-VCH Verlag GmbH, c2013 |
| Descrizione fisica | 1 online resource (443 p.) |
| Disciplina | 572.4 |
| Altri autori (Persone) |
La WeckwerthWolfram |
| Soggetto topico |
Metabolism
Metabolism - Research - Methodology |
| ISBN |
3-527-65586-7
1-299-31354-X 3-527-65589-1 3-527-65588-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Metabolomics in Practice; Contents; List of Contributors; Preface; 1 The Sampling and Sample Preparation Problem in Microbial Metabolomics; 1.1 Introduction; 1.2 Microorganisms and Their Properties; 1.3 Sampling Methods; 1.3.1 The Need for Rapid Sampling; 1.3.2 Sampling Systems; 1.4 Quenching; 1.4.1 Quenching Procedures and Their Properties; 1.4.2 Validation of the Quenching Procedure and Minimization of Metabolite Leakage; 1.4.3 Quenching Procedure for Determination of Intracellular Metabolites in the Presence of Extracellular Abundance; 1.4.4 Quenching of Bacteria; 1.5 Metabolite Extraction
1.5.1 Extraction Methods and Their Properties1.5.2 Validation of Extraction Methods for Yeast Metabolomics; 1.6 Application of 13C-Labeled Internal Standards; 1.7 Conclusions; References; 2 Tandem Mass Spectrometry Hyphenated with HPLC and UHPLC for Targeted Metabolomics; 2.1 Introduction; 2.2 LC-MS-Based Targeted Metabolomics; 2.3 Liquid Chromatography; 2.4 Mass Spectrometry; 2.4.1 Ionization Techniques; 2.4.2 Mass Analyzers; 2.5 Sample Preparation; 2.6 Relative and Absolute Quantification; 2.7 Applications; 2.8 Synopsis; References; 3 Uncertainty of Measurement in Quantitative Metabolomics 3.1 Introduction3.1.1 MS-Based Techniques in Metabolomics; 3.1.2 Uncertainty of Measurement in Quantitative Analysis; 3.1.2.1 Definition; 3.1.2.2 Uncertainty Calculation According to the Bottom-Up Approach; 3.2 Uncertainties of Quantitative MS Experiments; 3.2.1 Uncertainties in Sample Preparation; 3.2.1.1 Sampling and Sample Preparation in Metabolite Profiling in Fermentations; 3.2.1.2 Calculation of Sample Preparation Uncertainty for Intracellular Metabolite Quantitation in Yeast: A Practical Example; 3.2.1.3 LC-MS 3.2.2 Uncertainty of Mass Spectrometric Assays (LC-MS and GC-MS Measurements)3.2.2.1 GC-MS; 3.2.2.2 Calculation of Uncertainty for LC-MS Measurements of Cell Extracts: A Practical Example; 3.3 Concluding Remarks; Abbreviations; Acknowledgment; References; 4 Gas Chromatography and Comprehensive Two-Dimensional Gas Chromatography Hyphenated with Mass Spectrometry for Targeted and Nontargeted Metabolomics; 4.1 Introduction and Scope; 4.2 Sample Preparation for GC-Based Metabolite Profiling; 4.3 GC-MS and GC x GC-TOFMS Instrumentation for Metabolomics; 4.4 Data Analysis Strategies and Software 4.5 Illustrative Examples and Concluding RemarksReferences; 5 LC-MS-Based Nontargeted Metabolomics; 5.1 Introduction; 5.2 LC-MS-Based Untargeted Metabolomics; 5.2.1 LC Issues; 5.2.2 Mass Spectrometry; 5.3 Study Design; 5.4 Sample Preparation; 5.5 Analytical Strategies; 5.6 Data Analysis; 5.7 Metabolite Identification; 5.8 Applications; 5.9 Synopsis; References; 6 The Potential of Ultrahigh Resolution MS (FTICR-MS) in Metabolomics; 6.1 Introduction; 6.2 Metabolomics Technologies; 6.3 Principles of FTICR-MS; 6.3.1 Natural Ion Movement Inside an ICR Cell Subjected to Magnetic and Electric Fields 6.3.2 Applied Physical Techniques in FTICR-MS |
| Record Nr. | UNINA-9910813926803321 |
| Weinheim an der Bergstrasse, Germany, : Wiley-VCH Verlag GmbH, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||