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Advances in bioinformatics / / Vijai Singh, Ajay Kumar, editors
| Advances in bioinformatics / / Vijai Singh, Ajay Kumar, editors |
| Pubbl/distr/stampa | Singapore : , : Springer, , [2021] |
| Descrizione fisica | 1 online resource (446 pages) |
| Disciplina | 570.285 |
| Soggetto topico | Bioinformatics |
| ISBN | 981-336-191-3 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910495162603321 |
| Singapore : , : Springer, , [2021] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Advances in bioinformatics / / Vijai Singh, Ajay Kumar, editors
| Advances in bioinformatics / / Vijai Singh, Ajay Kumar, editors |
| Pubbl/distr/stampa | Singapore : , : Springer, , [2021] |
| Descrizione fisica | 1 online resource (446 pages) |
| Disciplina | 570.285 |
| Soggetto topico | Bioinformatics |
| ISBN | 981-336-191-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNISA-996464518603316 |
| Singapore : , : Springer, , [2021] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
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Advances in Synthetic Biology / / edited by Vijai Singh
| Advances in Synthetic Biology / / edited by Vijai Singh |
| Edizione | [1st ed. 2020.] |
| Pubbl/distr/stampa | Singapore : , : Springer Singapore : , : Imprint : Springer, , 2020 |
| Descrizione fisica | 1 online resource (XIII, 349 p. 75 illus., 63 illus. in color.) |
| Disciplina | 660.6 |
| Soggetto topico |
Systems biology
Genetic engineering Gene expression Medical genetics Electronic circuits Bioenginyeria Expressió gènica Enginyeria biomèdica Systems Biology Genetic Engineering Gene Expression Gene Function Circuits and Systems |
| Soggetto genere / forma | Llibres electrònics |
| ISBN | 981-15-0081-9 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Chapter 1. Introduction to Synthetic Biology -- Chapter 2. Current progress in synthetic genetic networks -- Chapter 3. Current Progress and Limitations in the Design, Construction and Characterization of Synthetic Parts -- Chapter 4. Recent progress in DNA parts standardization and characterization -- Chapter 5. Current status and challenges of DNA sequencing -- Chapter 6. Biomimetic approaches in synthetic biology -- Chapter 7. Design principles of synthetic biological oscillators -- Chapter 8. SOFTWARE-AIDED DESIGN OF IDEALISED PROGRAMMABLE NUCLEIC ACID CIRCUITS -- Chapter 9. Digital Circuit Design for Biological and Silicon Computers -- Chapter 10. Engineering of riboregulators for gene regulation as a tool for synthetic biology -- Chapter 11. Recent advances, challenges and opportunities in riboswitches -- Chapter 12. Recent Advances in Gene and Genome Assembly: Challenges and Implications -- Chapter 13. Recent advances, challenges and opportunities in synthetic genomes -- Chapter 14. Expansion of the genetic code -- Chapter 15. Expanding the potential of CRISPR-Cas9 technology for crops improvement -- Chapter 16. Synthetic biology at the hand of cell-free systems -- Chapter 17. Synthetic Biology for the Rapid, Precise and Compliant Detection of Microbes -- Chapter 18. Application and challenges of synthetic biology -- Chapter 19. Development and Application of Microfluidics in Synthetic Biology -- Chapter 20. The Ethics of Synthetic Biology Research and Development: A Principlist Approach. . |
| Record Nr. | UNINA-9910409699303321 |
| Singapore : , : Springer Singapore : , : Imprint : Springer, , 2020 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Biomanufacturing for sustainable production of biomolecules / / edited by Vijai Singh, Pau Loke Show
| Biomanufacturing for sustainable production of biomolecules / / edited by Vijai Singh, Pau Loke Show |
| Edizione | [1st ed. 2023.] |
| Pubbl/distr/stampa | Singapore : , : Springer, , [2023] |
| Descrizione fisica | 1 online resource (368 pages) |
| Disciplina | 170 |
| Soggetto topico | Biochemical engineering |
| ISBN | 981-19-7911-1 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Chapter 1. Strain design and optimization methods for sustainable production -- Chapter 2. Designer and minimal cells for production of biomolecules -- Chapter 3. Recent advances in downstream processing deployed in the treatment of pharmaceutical effluents -- Chapter 4. Microbial conversion of waste to biomolecules -- Chapter 5. Biosensor for detecting biomolecules -- Chapter 6. Artificial Intelligence Assisted Production of Biomolecules -- Chapter 7. Escherichia coli cell factory for synthesis of biomolecules -- Chapter 8. Bacillus subtilis cell factory -- Chapter 9. Pseudomonas putida cell factory -- Chapter 10. Cyanobacteria for marine based biomolecules -- Chapter 11. Yeast cell factory for biomolecules -- Chapter 12. Plant cell factory for biomolecules -- Chapter 13. Genetic manipulation of crop for enhanced food quality and nutrition towards sustainable production -- Chapter 14. Insect cell factory for production of biomolecules -- Chapter 15. Mammalian cell factor for biomolecules -- Chapter 16. Genome editing guided production of biomolecules -- Chapter 17. Cell free protein synthesis system for sustainable production of biofuels -- Chapter 18. Challenges and opportunities in biomanufacturing. |
| Record Nr. | UNINA-9910647385003321 |
| Singapore : , : Springer, , [2023] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Engineering of Microbial Biosynthetic Pathways / / edited by Vijai Singh, Ajay Kumar Singh, Poonam Bhargava, Madhvi Joshi, Chaitanya G. Joshi
| Engineering of Microbial Biosynthetic Pathways / / edited by Vijai Singh, Ajay Kumar Singh, Poonam Bhargava, Madhvi Joshi, Chaitanya G. Joshi |
| Edizione | [1st ed. 2020.] |
| Pubbl/distr/stampa | Singapore : , : Springer Singapore : , : Imprint : Springer, , 2020 |
| Descrizione fisica | 1 online resource (XV, 318 p. 42 illus., 32 illus. in color.) |
| Disciplina | 628.3 |
| Soggetto topico |
Biomedical engineering
Genetic engineering Microbiology Biochemical engineering Bioethics Computer simulation Biomedical Engineering/Biotechnology Genetic Engineering Biochemical Engineering Simulation and Modeling Enginyeria biomèdica Enginyeria genètica Microbiologia |
| Soggetto genere / forma | Llibres electrònics |
| ISBN | 981-15-2604-4 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Chapter 1. Introduction to metabolic engineering -- Chapter 2. Microbial strain engineering -- Chapter 3. Techniques for detection and extraction of metabolites -- Chapter 4. Genetically encoded biosensors and their applications in the development of microbial cell factories -- Chapter 5. Metabolic products of mixed culture fermentation -- Chapter 6. Recent advances in genetic engineering tools for metabolic engineering -- Chapter 7. Recent developments in synthetic biology toolbox -- Chapter 8. Ethical, patent and regulatory issues in microbial engineering -- Chapter 9. Microbial production of Vitamins -- Chapter 10. Bacterial production of organic acids and subsequent metabolism -- Chapter 11. Microbial production of polysaccharides -- Chapter 12. Microbial Production of Industrial Proteins and Enzymes Using Metabolic Engineering -- Chapter 13. Microbial production of antibiotics using metabolic engineering -- Chapter 14. Metabolic Engineering Opening New Avenues for Therapeutics -- Chapter 15. Biofuels Production Using Metabolic Engineering -- Chapter 16. Microbial Utilization of Glycerol for Biomanufacturing -- Chapter 17. Revealing Function of Amino Acids in Nitrifying and Anammox Systems through Chromatography and Metagenomic Analyses.-. |
| Record Nr. | UNINA-9910416108903321 |
| Singapore : , : Springer Singapore : , : Imprint : Springer, , 2020 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Microplastics Pollution and Its Remediation
| Microplastics Pollution and Its Remediation |
| Autore | Kumar Ajay |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Singapore : , : Springer, , 2024 |
| Descrizione fisica | 1 online resource (354 pages) |
| Altri autori (Persone) | SinghVijai |
| ISBN |
9789819740680
9789819740673 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Intro -- Foreword -- Preface -- Acknowledgments -- Acknowledgment by Ajay Kumar -- Acknowledgment by Vijai Singh -- Contents -- Editors and Contributors -- About the Editors -- Contributors -- 1: Navigating Microplastic Challenges: Separation and Detection Strategies in Wastewater Treatment -- 1.1 Introduction -- 1.2 Overview of Microplastics -- 1.2.1 Definition and Characteristics of Microplastics -- 1.2.2 Sources of Microplastics -- 1.3 Classifications of Microplastics in Wastewater Treatment Plant -- 1.3.1 Fibers -- 1.3.2 Fragments -- 1.3.3 Microbeads or Pellets -- 1.3.4 Foams and Films -- 1.4 Approaches for Sampling and Separating Microplastic from Wastewater -- 1.4.1 Sample Collection and Filtration -- 1.4.2 Density Separation -- 1.4.3 Supernatant Filtration -- 1.4.4 Electrostatic Separation -- 1.4.5 Magnetic Separation -- 1.4.6 Sample Processing: Digestion Methods -- 1.4.6.1 Hydrolytic Digestion with Acidic Substances -- 1.4.6.2 Hydrolytic Digestion with Alkaline Substances -- 1.4.6.3 Digestion by Oxidation -- 1.4.6.4 Enzymatic Digestion -- 1.4.6.5 Various Techniques for Detecting Microplastics in Wastewater -- 1.4.7 Physical Identification -- 1.4.7.1 Visual Identification -- 1.4.7.2 Scanning Electron Microscopy -- 1.4.8 Chemical Identification -- 1.4.8.1 Fourier Transform Infrared (FTIR) Spectroscopy -- 1.4.8.2 Raman Spectroscopy -- 1.4.8.3 Thermal Analysis -- 1.5 Conclusion -- References -- 2: Microplastics Detection Techniques -- 2.1 Introduction -- 2.2 Importance of Detecting Microplastics -- 2.2.1 Ecological Impact -- 2.2.2 Human Health Concerns -- 2.2.3 Environmental Monitoring -- 2.2.4 Source Identification and Mitigation -- 2.2.5 Scientific Understanding and Research -- 2.2.6 Public Awareness and Education -- 2.3 Challenges in Microplastics Detection -- 2.3.1 Size Variability.
2.3.2 Method Standardization -- 2.3.3 Sample Collection and Preparation -- 2.3.4 Lack of Reference Materials -- 2.3.5 Identification of Microplastic Types -- 2.3.6 Dynamic Environmental Conditions -- 2.3.7 Cost and Accessibility of Technology -- 2.3.8 Data Interpretation and Integration -- 2.4 Overview of Microplastics Detection Techniques -- 2.4.1 Visual Inspection and Counting -- 2.4.2 Spectroscopic Techniques -- 2.4.3 Microscopy-Based Approaches -- 2.4.4 Chromatographic Methods -- 2.4.5 Fluorescence Techniques -- 2.4.6 Density Separation Methods -- 2.4.7 Emerging Technologies -- 2.4.8 Quantitative Polymerase Chain Reaction (qPCR) -- 2.5 Visual Inspection and Counting Methods -- 2.5.1 Principles of Visual Inspection -- 2.5.2 Sampling Techniques -- 2.5.3 Microscopic Examination -- 2.5.4 Challenges and Limitations -- 2.5.5 Enhancements Through Staining -- 2.5.6 Quality Assurance and Standardization -- 2.5.7 Integration with Other Techniques -- 2.5.8 Educational and Citizen Science Applications -- 2.6 Spectroscopic Techniques for Microplastics Analysis -- 2.6.1 Fourier-Transform Infrared Spectroscopy (FTIR) -- 2.6.2 Raman Spectroscopy -- 2.6.3 Near-Infrared Spectroscopy (NIRS) -- 2.6.4 Ultraviolet-Visible (UV-Vis) Spectroscopy -- 2.6.5 Fluorescence Spectroscopy -- 2.7 Microscopy-Based Approaches -- 2.7.1 Scanning Electron Microscopy (SEM) -- 2.7.2 Transmission Electron Microscopy (TEM) -- 2.7.3 Light Microscopy -- 2.7.4 Confocal Microscopy -- 2.7.5 Infrared Microscopy -- 2.7.6 Staining Techniques -- 2.7.7 Automated Image Analysis -- 2.8 Chromatographic Methods in Microplastics Detection -- 2.8.1 Gas Chromatography (GC) -- 2.8.2 Liquid Chromatography (LC) -- 2.8.3 Solid-Phase Microextraction (SPME) -- 2.8.4 Pyrolysis-Gas Chromatography-Mass Spectrometry (Py-GC-MS) -- 2.8.5 Size-Exclusion Chromatography (SEC). 2.9 Emerging Technologies for Microplastics Detection -- 2.9.1 Nanotechnology-Based Sensors -- 2.9.2 Microfluidic Devices -- 2.9.3 Hyperspectral Imaging -- 2.9.4 Machine Learning and Artificial Intelligence -- 2.9.5 DNA Barcoding -- 2.9.6 Advanced Spectroscopic Techniques -- 2.9.7 Bioinformatics and Metagenomics -- 2.9.8 Autonomous Underwater Vehicles (AUVs) and Drones -- 2.10 Case Studies: Application of Detection Techniques -- 2.10.1 Water Bodies: Monitoring Microplastic Pollution in Rivers -- 2.10.2 Soil: Assessing Microplastic Contamination in Agricultural Land -- 2.10.3 Marine Environment: Mapping Microplastic Accumulation in Coastal Sediments -- 2.11 Future Trends in Microplastics Detection -- 2.11.1 Development of High-Throughput Screening Methods -- 2.11.2 Integration of Spectroscopic and Imaging Techniques -- 2.11.3 Advancements in Nanotechnology-Based Sensors -- 2.11.4 Implementation of Machine Learning and Artificial Intelligence -- 2.11.5 Multi-omics Approaches for Source Tracking -- 2.12 Environmental Implications and Policy Considerations -- 2.12.1 Climate Change and Global Warming -- 2.12.2 Biodiversity Loss and Habitat Destruction -- 2.12.3 Pollution and Environmental Contamination -- 2.12.4 Resource Depletion and Overexploitation -- 2.13 Conclusion -- References -- 3: Microplastics in Soil: Unveiling the Threat Within the Earth's Crucial Ecosystem -- 3.1 Introduction -- 3.1.1 Origins of Microplastics in Soil -- 3.2 Sources of Microplastics -- 3.3 Effects of Microplastics -- 3.3.1 Effect on Humans -- 3.3.2 Effect on Plants -- 3.4 Removal of Microplastics -- 3.5 Conclusion -- References -- 4: Microplastics in Aquatic Environment -- 4.1 Introduction -- 4.2 Types of Microplastics (MPS) -- 4.3 Sources of MP Contamination in Aquatic Environments. 4.4 Negative Implications of Microplastic Pollution on Marine Organisms -- 4.5 Impacts of Microplastics in Aquatic Ecosystems -- 4.6 Microplastics Affect the Food Chain in the Marine Environment -- 4.7 Long-Term Effects of Microplastic Exposure in Marine Life -- 4.8 Health Risks Associated with Microplastics in Marine Environment -- 4.9 Detection and Removal of Microplastic Contaminated Water -- 4.10 Conclusions and Future Perspective of Microplastics -- References -- 5: Microplastics in Terrestrial Ecosystems -- 5.1 Introduction -- 5.2 Sources of Terrestrial Microplastics (MPs) -- 5.3 Occurrence, Fate, and Transport of Microplastics in Terrestrial Ecosystems -- 5.4 Effects of Microplastics on the Terrestrial Ecosystems -- 5.4.1 Effects of Microplastics on the Physical Properties of Terrestrial Soil -- 5.4.2 Effects of Microplastics on the Chemical Properties of Terrestrial Soil -- 5.4.3 Effects of Microplastics on Soil Nutrient Cycling -- 5.4.4 Combined Effects of MPs and Other Pollutants on Soil Physiochemical Properties and Nutrient Cycling -- 5.4.5 Effects of Microplastics on Soil Biota -- 5.4.6 Effects of Microplastics on Soil Flora and Fauna -- 5.5 Mitigation Strategies of Microplastics Pollution in Terrestrial Ecosystems -- 5.6 Future Directions -- 5.7 Conclusions -- References -- 6: Microplastic in Glacier Region: Presence, Distribution, and Possible Sources -- 6.1 Introduction -- 6.2 Fate and Dispersion of Microplastics in Glacier -- 6.3 Microplastic in the Glacier's Snow and Ice -- 6.4 Microplastic in the Glacier's Biota -- 6.5 Microplastic in the Surrounding Seawater of the Glacier -- 6.6 Microplastic in the Glacier's Nearby Sediments -- 6.7 Conclusions -- References -- 7: Microplastics in Crops -- 7.1 Introduction -- 7.2 Chemical Composition of Microplastics -- 7.3 Sources of MPLs in Soil Ecosystems. 7.3.1 Greenhouse Covering and Films -- 7.3.2 Plastic Mulching -- 7.3.3 Solar Films -- 7.4 Concerns About Environmental Risks Associated with Microplastics in Croplands -- 7.4.1 Impact of MPLs on Soil -- 7.4.2 Effect on Soil Animals -- 7.4.3 Impact on Plants -- 7.4.3.1 On Overall Development of Plants -- 7.4.3.2 On Seed Germination and Root Growth -- 7.4.3.3 On Plant Growth and Tissue Differentiation -- 7.5 Translocation of Microplastics Inside the Plant -- 7.6 Microplastics Interaction with Other Environmental Pollutants -- 7.7 Methods to Detect and Analyze Microplastics -- References -- 8: Microplastics in Foods -- 8.1 Introduction -- 8.2 Sources and Types of Microplastics in Foods -- 8.3 Detection and Analysis Methods -- 8.3.1 Visual Inspection and Microscopy -- 8.3.2 Chemical Analysis -- 8.3.3 Thermal Analysis -- 8.3.4 Spectroscopic Techniques -- 8.3.5 Microplastic Extraction and Isolation Methods -- 8.4 Occurrence of Microplastics in Different Food Types -- 8.5 Human Health Implications -- 8.6 Microplastics in Food Chain -- 8.6.1 Pathways of Microplastics in the Food Chain -- 8.6.2 Implications for Human Health and the Environment -- 8.7 Regulatory Framework and Guidelines -- 8.7.1 International Initiatives -- 8.7.2 Regional Regulations -- 8.7.3 Food Safety Standards -- 8.7.4 Product Regulations -- 8.7.5 Research and Monitoring Programs -- 8.8 Mitigation and Prevention Strategies -- 8.8.1 Reduction of Plastic Use -- 8.8.2 Proper Waste Management -- 8.8.3 Pollution Control Measures -- 8.8.4 Microplastic Filtration and Removal -- 8.8.5 Sustainable Product Design -- 8.8.6 Education and Awareness -- 8.8.7 Research and Innovation -- 8.8.8 Policy and Regulation -- 8.9 Future Research Directions -- 8.10 Conclusion -- References -- 9: Microplastics in Personal Care Products and Cosmetics -- 9.1 Introduction. 9.2 Types of Plastic Used in Cosmetics and Personal Care Products. |
| Record Nr. | UNINA-9910878053503321 |
Kumar Ajay
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| Singapore : , : Springer, , 2024 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Multi-Omics Analysis of the Human Microbiome : From Technology to Clinical Applications
| Multi-Omics Analysis of the Human Microbiome : From Technology to Clinical Applications |
| Autore | Mani Indra |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Singapore : , : Springer Singapore Pte. Limited, , 2024 |
| Descrizione fisica | 1 online resource (357 pages) |
| Disciplina | 572.86 |
| Altri autori (Persone) | SinghVijai |
| ISBN | 981-9718-44-9 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Intro -- Foreword -- Preface -- Acknowledgments -- Contents -- About the Editors -- 1: Overview on Multi-omics Research in Microbiome Analysis -- 1.1 Introduction -- 1.2 Metagenomics in Microbial Characterization -- 1.2.1 Phage Metagenomics: Unravelling Viral Diversity in Microbial Communities -- 1.2.2 Metagenomic Analysis of Microbial Communities in Acid Mine Drainage -- 1.2.3 Metagenomic Exploration of Microbial Communities in the Sargasso Sea -- 1.2.4 Challenges in Metagenomic Analysis: Navigating the Complexities of Microbial Genomic Data -- 1.3 Metatranscriptomics in Microbial Characterization -- 1.3.1 Metatranscriptomic Analysis Uncovers Fundamental Metabolic Pathways and Unique Functions within Diverse Microbial Communities -- 1.3.2 Exploring Metatranscriptomic Insights into Bacterial Communities on Laundered Textiles -- 1.4 Metaproteomics in Microbial Characterization -- 1.4.1 Metaproteome of the Microbiota of Human Gut -- 1.4.2 Analysing the Microbiota Using a Metaproteomic Method -- 1.4.3 Current Challenges in Metaproteomics -- 1.4.4 Future Trends and Applications -- 1.5 Metabolomics in Microbial Characterization -- 1.5.1 Development in the Field of Metabolomics -- 1.5.1.1 Enhancing Analytical Tools -- 1.5.1.2 Access to Genomic Sequences -- 1.5.1.3 Standardization, Models, and Data Integration -- 1.5.2 Applications -- 1.5.2.1 Human Ecosystem -- 1.5.2.2 Environmental Ecosystem -- 1.5.3 Microbial Metabolomics: Navigating Challenges and Forging Collaborative Paths in Systems Microbiology -- 1.6 Conclusion and Future Perspectives -- References -- 2: Technology for Studying Multi-omics -- 2.1 Introduction -- 2.2 Genomics -- 2.3 Transcriptomics -- 2.4 Proteomics -- 2.5 Metabolomics -- 2.6 Conclusion, Limitations, and Future Directions -- References.
3: Next Generation Sequencing in Metagenomics and Metatranscriptomics -- 3.1 Introduction -- 3.2 NGS Technologies -- 3.3 Construct Library -- 3.4 Clonal Amplification -- 3.5 Sequence Library -- 3.6 Analyze Data -- 3.7 Advantages of Next-Generation Sequencing -- 3.8 Metagenomics -- 3.9 Sample Collection and DNA Extraction -- 3.10 Library Preparation for Metagenomic Sequencing -- 3.11 NGS Platforms for Metagenomics -- 3.12 Data Analysis in Metagenomics -- 3.13 Applications of Metagenomics in Environmental and Human Microbiome Studies -- 3.14 Metatranscriptomics -- 3.15 Gathering Samples and Isolating RNA -- 3.16 Library Preparation for Metatranscriptomic Sequencing -- 3.17 NGS Platforms for Metatranscriptomics -- 3.18 Data Analysis -- 3.19 Metatranscriptomics: Unraveling Gene Expression Patterns and Functional Insights -- 3.20 Comparative Analysis of Metagenomics and Metatranscriptomics -- 3.20.1 Similarities Between Metagenomics and Metatranscriptomics -- 3.20.2 Differences Between Metagenomics and Metatranscriptomics -- 3.20.3 Complementary Insights Provided by Each Approach -- 3.21 Synergizing Metagenomic and Metatranscriptomic Data: Achieving a Holistic Understanding -- 3.22 Challenges and Future Perspectives -- 3.23 Conclusion -- References -- 4: Bioinformatics Databases and Tools for Analysis of Multi-omics -- 4.1 Introduction -- 4.2 Information Technology and Tools for Analysis of Multi-omics -- 4.3 Bioinformatics for Analysis of Multi-omics -- 4.4 Bioinformatics Databases for Analysis of Multi-omics -- 4.5 Conclusion, Limitations, and Future Directions -- References -- 5: Metagenomics in the Census of Microbial Diversity -- 5.1 Introduction -- 5.2 Metagenomics in Census Skin Microbial Diversity -- 5.3 Metagenomics in Census Oral Microbial Diversity -- 5.4 Metagenomics in Census Lung Microbial Diversity. 5.5 Metagenomics in Census Gut Microbial Diversity -- 5.6 Metagenomics in Census Urinary Tract Microbial Diversity -- 5.7 Metagenomics in Census Brain Microbial Diversity -- 5.8 Conclusion and Future Perspectives -- References -- 6: Metatranscriptomics, Metaproteomics, and Metabolomics Approaches for Microbiome Characterization -- 6.1 Introduction -- 6.2 Metatranscriptomics -- 6.2.1 Significance of Metatranscriptomics in Microbial Studies -- 6.2.2 Application of Metatranscriptomics in Microbial Characterization -- 6.2.2.1 Analyzing Gene Expression -- Aquatic Environment -- Terrestrial Environment -- Human Microbiomes -- 6.2.2.2 Microbial Interaction -- Animal-Microbe Interaction -- Plant-Microbe Interaction -- 6.2.2.3 Human Health and Diseases -- 6.2.2.4 Agriculture-Microbe Dynamics -- 6.2.2.5 Functional Profiling -- 6.2.3 Challenges in Metatranscriptomic Analysis -- 6.3 Metaproteomics in Microbial Characterization -- 6.3.1 Investigations into the Metaproteome of the Microbiota of Human Gut -- 6.3.1.1 Metaproteome of Human Infant Gut -- 6.3.1.2 Gut Proteome of Human Adult -- 6.3.2 Application of Metaproteomics -- 6.4 Metabolomics in Microbial Characterization -- 6.4.1 Metabolomics Challenges -- 6.4.2 Application of Metabolomics -- 6.5 Conclusion and Future Perspectives -- References -- 7: Metagenomics Insight into the Mycobiome Analysis -- 7.1 Introduction -- 7.2 Mycobiome -- 7.2.1 Mycobiome in Gut -- 7.2.2 Mycobiome of Skin -- 7.2.3 Tumor Mycobiome -- 7.2.4 Mycobiomes in Various Body Sites -- 7.3 Mycobiome in Health and Disease -- 7.4 Metagenomics in Gut Mycobiome -- 7.5 Metagenomics in Lung Mycobiome -- 7.6 Metagenomics in Cancer Mycobiome -- 7.7 Conclusion and Future Perspectives -- References -- 8: Fluxomics and Metabolic Flux Analysis -- 8.1 Overview of Fluxomics -- 8.2 Applications of Fluxomics. 8.3 Concept of Metabolic Flux Analysis (MFA) -- 8.4 Observation of Steady and Non-steady-State Flux Analysis -- 8.4.1 MFA at Steady State -- 8.4.2 Isotopic, Steady-State Flux Analysis (13C-MFA) -- 8.4.3 Isotopic, Non-steady State (13C-NMFA) Flux Analysis -- 8.4.4 Dynamic Metabolic Flux Analysis (DMFA) -- 8.5 Conclusion -- 8.6 Future Directions -- References -- 9: Multi-omics in Gut Microbiome -- 9.1 Introduction -- 9.2 Gut Microbiome -- 9.2.1 Variability in Gut Microbiome -- 9.2.2 Importance of Gut Microbiome -- 9.3 Metagenomics in Gut Microbiome -- 9.3.1 Sequencing Strategies Used in Metagenomics -- 9.3.2 How Is Metagenomics Performed? -- 9.3.3 Challenges Faced During Metagenomics -- 9.3.4 Application of Metagenomics -- 9.4 Metatranscriptomics in Gut Microbiome -- 9.4.1 Microbiome mRNA Isolation and Processing -- 9.4.2 Metatransciptomics Data Computational Analysis -- 9.4.3 Metatranscriptomics in Disease and Health -- 9.4.3.1 Understanding Microbiome Impacts on Drug Metabolism and Health -- 9.4.3.2 Microbiome Impact on Mucosal Immune System -- 9.4.3.3 Antisense RNA in Microbiome -- 9.4.3.4 Metatranscriptomics in Diagnosis of Respiratory Conditions -- 9.4.3.5 Metatranscriptomics in Cancer -- 9.4.4 Challenges in Metatranscriptome Analysis -- 9.5 Metaproteomics in Gut Microbiome -- 9.5.1 Applications -- 9.5.1.1 Bioinformatics in the Study of Microbiomes in the Human Gut -- 9.5.1.2 Dietary and Obesity Effects on the Gut Metaproteome -- 9.5.1.3 Metaproteomic Research on the Functional Relationship Between the Host Microbiota and Type 1 Diabetes -- 9.5.1.4 Metaproteomic Studies in Gastric Cancer and IBD -- 9.5.2 Advancements and Challenges in Human Gut Metaproteomics -- 9.6 Metabolomics in Gut Microbiome -- 9.6.1 Application -- 9.6.1.1 Detecting Microbial Metabolites -- 9.6.1.2 Metabolomics in Precision Medicine. 9.6.1.3 Microbial Metabolism Reconstruction -- 9.6.2 Metabolomics and Its Challenges -- 9.7 Gut Microbiome in Health and Disease -- 9.8 Conclusion and Future Perspectives -- References -- 10: Multi-omics in Study of Skin Microbiome -- 10.1 Introduction -- 10.2 Skin Diseases and Microbes -- 10.3 Multi-omics Approaches in the Skin -- 10.3.1 Metagenomics Next-Generation Sequencing (mNGS) -- 10.3.2 Roche/454 (Pyro Sequencing) -- 10.3.3 Torrent lon -- 10.3.4 Illumina's Sequencing Method -- 10.3.4.1 Issues with Illumina Sequencing -- 10.3.4.2 The SOLiD (Sequencing by Oligonucleotide Ligation and Detection) Platform -- 10.3.4.3 Pacific Biosciences and the Oxford Nanopore: Single-Molecule Sequencing -- 10.4 Approaches to Study Metagenomes -- 10.4.1 Shotgun Metagenomics -- 10.4.2 Targeted Metagenomics -- 10.4.2.1 Profiling of the Bacterial Community Using 165 Amplicons -- 10.4.2.2 Profiling of the Fungus Population Using ITS, LSU, and SSU Amplicon Sequencing -- 10.4.2.3 Transcriptomics -- 10.5 Future Perspective -- 10.5.1 Developing Therapeutics and Diagnostics -- 10.5.2 Multi-Kingdom Interactions -- 10.6 Conclusion -- References -- 11: Multi-omics in Study of Oral Microbiome -- 11.1 Introduction -- 11.2 Oral Microbiome -- 11.3 Multi-omics for Oral Microbiome -- 11.3.1 Genomics -- 11.3.2 Metagenomics -- 11.3.3 Transcriptomics -- 11.3.4 Proteomics -- 11.3.5 Metabolomics -- 11.4 Conclusion -- References -- 12: Multi-omics in Study of Lung Microbiome -- 12.1 Introduction -- 12.2 Pulmonary Diseases and Lung Microbiome -- 12.3 Methods of Lung Microbiome Study -- 12.3.1 Metagenomics -- 12.3.2 Metatranscriptomics -- 12.3.3 Metaproteomics -- 12.3.4 Metabolomics -- 12.4 Taxonomic Analysis of Lung Microbiome -- 12.4.1 Bioinformatics Tools for Taxonomic Analysis -- 12.4.2 Taxonomic Analysis of Lung Microbiome in Lung Diseases. 12.4.2.1 Asthma. |
| Record Nr. | UNINA-9910865262403321 |
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Mani Indra
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| Singapore : , : Springer Singapore Pte. Limited, , 2024 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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Recent advances in food biotechnology / / Ajay Kumar, Kiran Patruni and Vijai Singh, editors
| Recent advances in food biotechnology / / Ajay Kumar, Kiran Patruni and Vijai Singh, editors |
| Pubbl/distr/stampa | Singapore : , : Springer Nature Singapore Pte Ltd., , [2022] |
| Descrizione fisica | 1 online resource (501 pages) |
| Disciplina | 664 |
| Soggetto topico | Food - Biotechnology |
| ISBN | 981-16-8125-2 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNINA-9910580148503321 |
| Singapore : , : Springer Nature Singapore Pte Ltd., , [2022] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
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