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Handbook of comparative genomics [[electronic resource] ] : principles and methodology / / Cecilia Saccone, Graziano Pesole
| Handbook of comparative genomics [[electronic resource] ] : principles and methodology / / Cecilia Saccone, Graziano Pesole |
| Autore | Saccone C |
| Pubbl/distr/stampa | New York, : Wiley-Liss, c2003 |
| Descrizione fisica | 1 online resource (444 p.) |
| Disciplina |
572.8
572.86 |
| Altri autori (Persone) | PesoleGraziano |
| Soggetto topico |
Genomics
Evolutionary genetics |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-280-25276-6
9786610252763 0-470-35602-2 0-471-32641-0 0-471-72272-3 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
HANDBOOK OF COMPARATIVE GENOMICS Principles and Methodology; CONTENTS; PREFACE; I GENOME FEATURES; 1 PROKARYOTES; 1.1 Introduction; 1.2 Morphology and Classification; 1.3 Genome Shape and Size; 1.4 Gene Content and Organization; 1.5 Base Composition; 1.6 Codon Use; 1.7 Replication and Expression; 2 EUKARYOTES; 2.1 Introduction; 2.2 Classification and Time Scale; 2.3 Genome Shape and Size; 2.4 Base Composition; 2.5 Replication, Repair, and Recombination; 2.6 Gene Expression; 2.6.1 Transcription and Posttranscriptional Regulation; 2.6.2 Genetic Code and Codon Use
2.6.3 Translation and Posttranslation Modifications2.7 Completely Sequenced Eukaryotic Genomes; 2.7.1 Saccharomyces cerevisiae Genome; 2.7.2 Schizosaccharomyces pombe Genome; 2.7.3 Caenorhabditis elegans Genome; 2.7.4 Drosophila melanogaster Genome; 2.7.5 Arabidopsis thaliana Genome; 2.7.6 Oryza sativa Genome; 2.7.7 Homo sapiens Genome; 3 ORGANELLES; 3.1 Mitochondria; 3.1.1 General Structure and Function; 3.1.2 DNA and Genetic System; 3.1.3 Genome Features; 3.2 Chloroplasts and Other Plastids; II METHODOLOGIES; 4 MOLECULAR BIOLOGY TECHNIQUES FOR GENOMICS; 4.1 Genome DNA Sequencing 4.1.1 DNA-Sequencing Techniques4.1.2 The Human Genome Project; 4.2 Analysis of the Transcriptome; 4.2.1 Analysis of Gene Expression; 4.2.2 Expressed Sequence Tags; 4.2.3 Serial Analysis of Gene Expression; 4.2.4 Differential Display; 4.2.5 Representational Difference Analysis; 4.2.6 DNA Microarrays; 4.3 Analysis of the Proteome; 4.3.1 Two-Dimensional Gel Electrophoresis; 4.3.2 Protein Identification; 4.3.3 Study of Protein-DNA and Protein-Protein Interactions; 4.3.4 Proteome Analysis Using Biochips; 5 BIOLOGICAL DATABASES IN THE GENOME ERA; 5.1 Introduction 5.2 Primary and Specialized Databases5.3 Database Structures; 5.4 Linked Databases and Database Interoperability; 5.5 Database Annotation; 5.6 Retrieval Systems; 5.6.1 SRS; 5.6.2 Entrez; 5.6.3 Other Retrieval Systems; 5.7 Nucleotide Databases; 5.8 Protein Databases; 5.9 Other Protein Databases; 5.10 Genomic Databases and Resources; 5.11 Gene Databases and Resources; 5.12 Transcriptome Databases; 5.13 Metabolism Databases; 5.14 Mutation Databases; 5.15 Mitochondrial Databases and Resources; 6 COMPUTATIONAL METHODS FOR THE ANALYSIS OF GENOME SEQUENCE DATA; 6.1 Introduction; 6.2 Dot-Plot Matrix 6.3 Sequence Pairwise Alignment6.3.1 Needleman-Wunsch Global Alignment Algorithm; 6.3.2 Smith-Waterman Algorithm for the Identification of Common Molecular Subsequences; 6.3.3 Alignment of cDNA and Genomic DNA Sequences; 6.3.4 Genome Alignment; 6.3.5 Cleanup of Sequence Databases from Redundancy; 6.3.6 Measure of the Similarity Degree between Homologous Sequences; 6.4 Database Searching; 6.4.1 FASTA; 6.4.2 BLAST; 6.4.3 BLAST and FASTA Family of Programs; 6.4.4 Filtering Matches to Unwanted Sequences; 6.4.5 Filtering Matches to Repetitive Sequences 6.4.6 Statistical Significance of Alignment Scores |
| Record Nr. | UNINA-9910146066803321 |
Saccone C
|
||
| New York, : Wiley-Liss, c2003 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Handbook of comparative genomics [[electronic resource] ] : principles and methodology / / Cecilia Saccone, Graziano Pesole
| Handbook of comparative genomics [[electronic resource] ] : principles and methodology / / Cecilia Saccone, Graziano Pesole |
| Autore | Saccone C |
| Pubbl/distr/stampa | New York, : Wiley-Liss, c2003 |
| Descrizione fisica | 1 online resource (444 p.) |
| Disciplina |
572.8
572.86 |
| Altri autori (Persone) | PesoleGraziano |
| Soggetto topico |
Genomics
Evolutionary genetics |
| ISBN |
1-280-25276-6
9786610252763 0-470-35602-2 0-471-32641-0 0-471-72272-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
HANDBOOK OF COMPARATIVE GENOMICS Principles and Methodology; CONTENTS; PREFACE; I GENOME FEATURES; 1 PROKARYOTES; 1.1 Introduction; 1.2 Morphology and Classification; 1.3 Genome Shape and Size; 1.4 Gene Content and Organization; 1.5 Base Composition; 1.6 Codon Use; 1.7 Replication and Expression; 2 EUKARYOTES; 2.1 Introduction; 2.2 Classification and Time Scale; 2.3 Genome Shape and Size; 2.4 Base Composition; 2.5 Replication, Repair, and Recombination; 2.6 Gene Expression; 2.6.1 Transcription and Posttranscriptional Regulation; 2.6.2 Genetic Code and Codon Use
2.6.3 Translation and Posttranslation Modifications2.7 Completely Sequenced Eukaryotic Genomes; 2.7.1 Saccharomyces cerevisiae Genome; 2.7.2 Schizosaccharomyces pombe Genome; 2.7.3 Caenorhabditis elegans Genome; 2.7.4 Drosophila melanogaster Genome; 2.7.5 Arabidopsis thaliana Genome; 2.7.6 Oryza sativa Genome; 2.7.7 Homo sapiens Genome; 3 ORGANELLES; 3.1 Mitochondria; 3.1.1 General Structure and Function; 3.1.2 DNA and Genetic System; 3.1.3 Genome Features; 3.2 Chloroplasts and Other Plastids; II METHODOLOGIES; 4 MOLECULAR BIOLOGY TECHNIQUES FOR GENOMICS; 4.1 Genome DNA Sequencing 4.1.1 DNA-Sequencing Techniques4.1.2 The Human Genome Project; 4.2 Analysis of the Transcriptome; 4.2.1 Analysis of Gene Expression; 4.2.2 Expressed Sequence Tags; 4.2.3 Serial Analysis of Gene Expression; 4.2.4 Differential Display; 4.2.5 Representational Difference Analysis; 4.2.6 DNA Microarrays; 4.3 Analysis of the Proteome; 4.3.1 Two-Dimensional Gel Electrophoresis; 4.3.2 Protein Identification; 4.3.3 Study of Protein-DNA and Protein-Protein Interactions; 4.3.4 Proteome Analysis Using Biochips; 5 BIOLOGICAL DATABASES IN THE GENOME ERA; 5.1 Introduction 5.2 Primary and Specialized Databases5.3 Database Structures; 5.4 Linked Databases and Database Interoperability; 5.5 Database Annotation; 5.6 Retrieval Systems; 5.6.1 SRS; 5.6.2 Entrez; 5.6.3 Other Retrieval Systems; 5.7 Nucleotide Databases; 5.8 Protein Databases; 5.9 Other Protein Databases; 5.10 Genomic Databases and Resources; 5.11 Gene Databases and Resources; 5.12 Transcriptome Databases; 5.13 Metabolism Databases; 5.14 Mutation Databases; 5.15 Mitochondrial Databases and Resources; 6 COMPUTATIONAL METHODS FOR THE ANALYSIS OF GENOME SEQUENCE DATA; 6.1 Introduction; 6.2 Dot-Plot Matrix 6.3 Sequence Pairwise Alignment6.3.1 Needleman-Wunsch Global Alignment Algorithm; 6.3.2 Smith-Waterman Algorithm for the Identification of Common Molecular Subsequences; 6.3.3 Alignment of cDNA and Genomic DNA Sequences; 6.3.4 Genome Alignment; 6.3.5 Cleanup of Sequence Databases from Redundancy; 6.3.6 Measure of the Similarity Degree between Homologous Sequences; 6.4 Database Searching; 6.4.1 FASTA; 6.4.2 BLAST; 6.4.3 BLAST and FASTA Family of Programs; 6.4.4 Filtering Matches to Unwanted Sequences; 6.4.5 Filtering Matches to Repetitive Sequences 6.4.6 Statistical Significance of Alignment Scores |
| Record Nr. | UNINA-9910830606403321 |
|
Saccone C
|
||
| New York, : Wiley-Liss, c2003 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Handbook of comparative genomics : principles and methodology / / Cecilia Saccone, Graziano Pesole
| Handbook of comparative genomics : principles and methodology / / Cecilia Saccone, Graziano Pesole |
| Autore | Saccone C |
| Pubbl/distr/stampa | New York, : Wiley-Liss, c2003 |
| Descrizione fisica | 1 online resource (444 p.) |
| Disciplina | 572.8 |
| Altri autori (Persone) | PesoleGraziano |
| Soggetto topico |
Genomics
Evolutionary genetics |
| ISBN |
9786610252763
9781280252761 1280252766 9780470356029 0470356022 9780471326410 0471326410 9780471722724 0471722723 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
HANDBOOK OF COMPARATIVE GENOMICS Principles and Methodology; CONTENTS; PREFACE; I GENOME FEATURES; 1 PROKARYOTES; 1.1 Introduction; 1.2 Morphology and Classification; 1.3 Genome Shape and Size; 1.4 Gene Content and Organization; 1.5 Base Composition; 1.6 Codon Use; 1.7 Replication and Expression; 2 EUKARYOTES; 2.1 Introduction; 2.2 Classification and Time Scale; 2.3 Genome Shape and Size; 2.4 Base Composition; 2.5 Replication, Repair, and Recombination; 2.6 Gene Expression; 2.6.1 Transcription and Posttranscriptional Regulation; 2.6.2 Genetic Code and Codon Use
2.6.3 Translation and Posttranslation Modifications2.7 Completely Sequenced Eukaryotic Genomes; 2.7.1 Saccharomyces cerevisiae Genome; 2.7.2 Schizosaccharomyces pombe Genome; 2.7.3 Caenorhabditis elegans Genome; 2.7.4 Drosophila melanogaster Genome; 2.7.5 Arabidopsis thaliana Genome; 2.7.6 Oryza sativa Genome; 2.7.7 Homo sapiens Genome; 3 ORGANELLES; 3.1 Mitochondria; 3.1.1 General Structure and Function; 3.1.2 DNA and Genetic System; 3.1.3 Genome Features; 3.2 Chloroplasts and Other Plastids; II METHODOLOGIES; 4 MOLECULAR BIOLOGY TECHNIQUES FOR GENOMICS; 4.1 Genome DNA Sequencing 4.1.1 DNA-Sequencing Techniques4.1.2 The Human Genome Project; 4.2 Analysis of the Transcriptome; 4.2.1 Analysis of Gene Expression; 4.2.2 Expressed Sequence Tags; 4.2.3 Serial Analysis of Gene Expression; 4.2.4 Differential Display; 4.2.5 Representational Difference Analysis; 4.2.6 DNA Microarrays; 4.3 Analysis of the Proteome; 4.3.1 Two-Dimensional Gel Electrophoresis; 4.3.2 Protein Identification; 4.3.3 Study of Protein-DNA and Protein-Protein Interactions; 4.3.4 Proteome Analysis Using Biochips; 5 BIOLOGICAL DATABASES IN THE GENOME ERA; 5.1 Introduction 5.2 Primary and Specialized Databases5.3 Database Structures; 5.4 Linked Databases and Database Interoperability; 5.5 Database Annotation; 5.6 Retrieval Systems; 5.6.1 SRS; 5.6.2 Entrez; 5.6.3 Other Retrieval Systems; 5.7 Nucleotide Databases; 5.8 Protein Databases; 5.9 Other Protein Databases; 5.10 Genomic Databases and Resources; 5.11 Gene Databases and Resources; 5.12 Transcriptome Databases; 5.13 Metabolism Databases; 5.14 Mutation Databases; 5.15 Mitochondrial Databases and Resources; 6 COMPUTATIONAL METHODS FOR THE ANALYSIS OF GENOME SEQUENCE DATA; 6.1 Introduction; 6.2 Dot-Plot Matrix 6.3 Sequence Pairwise Alignment6.3.1 Needleman-Wunsch Global Alignment Algorithm; 6.3.2 Smith-Waterman Algorithm for the Identification of Common Molecular Subsequences; 6.3.3 Alignment of cDNA and Genomic DNA Sequences; 6.3.4 Genome Alignment; 6.3.5 Cleanup of Sequence Databases from Redundancy; 6.3.6 Measure of the Similarity Degree between Homologous Sequences; 6.4 Database Searching; 6.4.1 FASTA; 6.4.2 BLAST; 6.4.3 BLAST and FASTA Family of Programs; 6.4.4 Filtering Matches to Unwanted Sequences; 6.4.5 Filtering Matches to Repetitive Sequences 6.4.6 Statistical Significance of Alignment Scores |
| Record Nr. | UNINA-9911019974403321 |
|
Saccone C
|
||
| New York, : Wiley-Liss, c2003 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||