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Metagenomics : current advances and emerging concepts / / edited by Diana Marco
| Metagenomics : current advances and emerging concepts / / edited by Diana Marco |
| Pubbl/distr/stampa | Norfolk, UK : , : Caister Academic Press, , [2017] |
| Descrizione fisica | 1 online resource (vi, 146 pages) : illustrations |
| Disciplina | 572.8629 |
| Soggetto topico | Microbial genomics - Data processing |
| ISBN | 1-910190-60-8 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | 1. Integration of ecology and environmental metagenomics conceptual and methodological frameworks -- 2. Guidelines to statistical analysis of microbial composition data inferred from metagenomic sequencing -- 3. Methods for the metagenomic data visualization and analysis -- 4. Comparing viral metagenomic extraction methods -- 5. Spatiotemporal variations in the abundance and structure of denitrifier communities in sediments differing in nitrate content -- 6. Using metagenomics to connect microbial community biodiversity and functions -- 7. Application of omics approaches to studying methylotrophs and methylotroph communities. |
| Record Nr. | UNINA-9910792833703321 |
| Norfolk, UK : , : Caister Academic Press, , [2017] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Metagenomics : current advances and emerging concepts / / edited by Diana Marco
| Metagenomics : current advances and emerging concepts / / edited by Diana Marco |
| Pubbl/distr/stampa | Norfolk, UK : , : Caister Academic Press, , [2017] |
| Descrizione fisica | 1 online resource (vi, 146 pages) : illustrations |
| Disciplina | 572.8629 |
| Soggetto topico | Microbial genomics - Data processing |
| ISBN | 1-910190-60-8 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | 1. Integration of ecology and environmental metagenomics conceptual and methodological frameworks -- 2. Guidelines to statistical analysis of microbial composition data inferred from metagenomic sequencing -- 3. Methods for the metagenomic data visualization and analysis -- 4. Comparing viral metagenomic extraction methods -- 5. Spatiotemporal variations in the abundance and structure of denitrifier communities in sediments differing in nitrate content -- 6. Using metagenomics to connect microbial community biodiversity and functions -- 7. Application of omics approaches to studying methylotrophs and methylotroph communities. |
| Record Nr. | UNINA-9910809679503321 |
| Norfolk, UK : , : Caister Academic Press, , [2017] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Metagenomics of the microbial nitrogen cycle : theory, methods and applications / / Edited by Diana Marco
| Metagenomics of the microbial nitrogen cycle : theory, methods and applications / / Edited by Diana Marco |
| Pubbl/distr/stampa | Norfolk, England : , : Caister Academic Press, , [2014] |
| Descrizione fisica | 1 online resource (283 p.) |
| Disciplina | 579.17 |
| Soggetto topico |
Microbial ecology
Nitrogen - Fixation Microbial genomics Nitrogen cycle |
| Soggetto genere / forma | Electronic books. |
| ISBN | 1-908230-60-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Contents ; Contributors; Preface; Foreword; 1: Functional Assignment of Metagenomic Data: Insights for the Microbial Nitrogen Cycle; Introduction; Microbial nitrogen cycle; Exploring the nitrogen cycle using genomic and metagenomic techniques; Terrestrial nitrogen cycle; Aquatic nitrogen cycle; Future scope; 2: Microbial Metagenomics of Oxygen Minimum Zones; Introduction; Metagenomic insights into OMZ metabolism; Drivers of community structure; Challenges; 3: Interactions between Methane and Nitrogen Cycling: Current Metagenomic Studies and Future Trends; Introduction
Interactions between methane and nitrogen cyclingCurrent metagenomic studies; Future perspective; 4: Quantification of Functional Microbial Nitrogen Cycle Genes in Environmental Samples; Introduction; N cycle; Analysis of N cycle-related functional communities; cPCR and qPCR; Quantification of functional genes using qPCR; 5: Stable Isotope Probing the Nitrogen Cycle: Current Applications and Future Directions; Introduction; Nitrogen uptake is limited in many environments; The utility of molecular approaches; DNA stable isotope probing; 15N-DNA stable isotope probing; Nitrogen fixation Biodegradation and bioremediationInorganic N cycling; Organic nitrogen; The way forward; Metagenomics; Combining 15N-SIP, metagenomic sequencing and flow cytometry; Protein stable isotope probing; Chip stable isotope probing; Conclusions; 6: Application of Metaproteomics to the Exploration of Microbial N-cycling Communities; Introduction; Metaproteomics and the nitrogen cycle; Protein-SIP and the nitrogen cycle; Proteomics of microbial isolates relevant to the nitrogen cycle; Conclusions; Future trends 7: Functional Molecular Analysis of Microbial Nitrogen Cycle by Microarray-based GeoChip: Insights for Climate Change, Agriculture and Other Ecological StudiesIntroduction; Microarray technology and functional gene array; GeoChip technology; GeoChip application in investigating N functional genes; Challenges for GeoChip technology and future directions; 8: Functional and Taxonomic Diversity of the Nitrogen Cycling Guild in the Sargasso Sea Metagenomes; Introduction; Taxonomic diversity of the Sargasso Sea microbial communities; Functional diversity of the N-cycling guild in the Sargasso Sea DiscussionExclusion by filtering; A cautionary tale on ignoring the masses; Future trends; 9: Microbial Nitrogen Cycle: Determination of Microbial Functional Activities and Related N-compounds in Environmental Samples; Introduction; Microbial functional activities of the N-cycle; Determination of some N-compounds relative to the N-cycle; 10: Functional Metagenomics of the Nitrogen Cycle in Freshwater Lakes with Focus on Methylotrophic Bacteria; Introduction; Functional metagenomics uncover the dominant methylotrophs, Methylobacter and Methylotenera, and identify nitrogen metabolism strategies Nitrate supplement causes specific responses by the Methylophilaceae ecotypes |
| Record Nr. | UNINA-9910464511703321 |
| Norfolk, England : , : Caister Academic Press, , [2014] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Metagenomics of the microbial nitrogen cycle : theory, methods and applications / / Edited by Diana Marco
| Metagenomics of the microbial nitrogen cycle : theory, methods and applications / / Edited by Diana Marco |
| Pubbl/distr/stampa | Norfolk, England : , : Caister Academic Press, , [2014] |
| Descrizione fisica | 1 online resource (283 p.) |
| Disciplina | 579.17 |
| Soggetto topico |
Microbial ecology
Nitrogen - Fixation Microbial genomics Nitrogen cycle |
| ISBN | 1-908230-60-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Contents ; Contributors; Preface; Foreword; 1: Functional Assignment of Metagenomic Data: Insights for the Microbial Nitrogen Cycle; Introduction; Microbial nitrogen cycle; Exploring the nitrogen cycle using genomic and metagenomic techniques; Terrestrial nitrogen cycle; Aquatic nitrogen cycle; Future scope; 2: Microbial Metagenomics of Oxygen Minimum Zones; Introduction; Metagenomic insights into OMZ metabolism; Drivers of community structure; Challenges; 3: Interactions between Methane and Nitrogen Cycling: Current Metagenomic Studies and Future Trends; Introduction
Interactions between methane and nitrogen cyclingCurrent metagenomic studies; Future perspective; 4: Quantification of Functional Microbial Nitrogen Cycle Genes in Environmental Samples; Introduction; N cycle; Analysis of N cycle-related functional communities; cPCR and qPCR; Quantification of functional genes using qPCR; 5: Stable Isotope Probing the Nitrogen Cycle: Current Applications and Future Directions; Introduction; Nitrogen uptake is limited in many environments; The utility of molecular approaches; DNA stable isotope probing; 15N-DNA stable isotope probing; Nitrogen fixation Biodegradation and bioremediationInorganic N cycling; Organic nitrogen; The way forward; Metagenomics; Combining 15N-SIP, metagenomic sequencing and flow cytometry; Protein stable isotope probing; Chip stable isotope probing; Conclusions; 6: Application of Metaproteomics to the Exploration of Microbial N-cycling Communities; Introduction; Metaproteomics and the nitrogen cycle; Protein-SIP and the nitrogen cycle; Proteomics of microbial isolates relevant to the nitrogen cycle; Conclusions; Future trends 7: Functional Molecular Analysis of Microbial Nitrogen Cycle by Microarray-based GeoChip: Insights for Climate Change, Agriculture and Other Ecological StudiesIntroduction; Microarray technology and functional gene array; GeoChip technology; GeoChip application in investigating N functional genes; Challenges for GeoChip technology and future directions; 8: Functional and Taxonomic Diversity of the Nitrogen Cycling Guild in the Sargasso Sea Metagenomes; Introduction; Taxonomic diversity of the Sargasso Sea microbial communities; Functional diversity of the N-cycling guild in the Sargasso Sea DiscussionExclusion by filtering; A cautionary tale on ignoring the masses; Future trends; 9: Microbial Nitrogen Cycle: Determination of Microbial Functional Activities and Related N-compounds in Environmental Samples; Introduction; Microbial functional activities of the N-cycle; Determination of some N-compounds relative to the N-cycle; 10: Functional Metagenomics of the Nitrogen Cycle in Freshwater Lakes with Focus on Methylotrophic Bacteria; Introduction; Functional metagenomics uncover the dominant methylotrophs, Methylobacter and Methylotenera, and identify nitrogen metabolism strategies Nitrate supplement causes specific responses by the Methylophilaceae ecotypes |
| Record Nr. | UNINA-9910786653403321 |
| Norfolk, England : , : Caister Academic Press, , [2014] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Metagenomics of the microbial nitrogen cycle : theory, methods and applications / / Edited by Diana Marco
| Metagenomics of the microbial nitrogen cycle : theory, methods and applications / / Edited by Diana Marco |
| Pubbl/distr/stampa | Norfolk, England : , : Caister Academic Press, , [2014] |
| Descrizione fisica | 1 online resource (283 p.) |
| Disciplina | 579.17 |
| Soggetto topico |
Microbial ecology
Nitrogen - Fixation Microbial genomics Nitrogen cycle |
| ISBN | 1-908230-60-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Contents ; Contributors; Preface; Foreword; 1: Functional Assignment of Metagenomic Data: Insights for the Microbial Nitrogen Cycle; Introduction; Microbial nitrogen cycle; Exploring the nitrogen cycle using genomic and metagenomic techniques; Terrestrial nitrogen cycle; Aquatic nitrogen cycle; Future scope; 2: Microbial Metagenomics of Oxygen Minimum Zones; Introduction; Metagenomic insights into OMZ metabolism; Drivers of community structure; Challenges; 3: Interactions between Methane and Nitrogen Cycling: Current Metagenomic Studies and Future Trends; Introduction
Interactions between methane and nitrogen cyclingCurrent metagenomic studies; Future perspective; 4: Quantification of Functional Microbial Nitrogen Cycle Genes in Environmental Samples; Introduction; N cycle; Analysis of N cycle-related functional communities; cPCR and qPCR; Quantification of functional genes using qPCR; 5: Stable Isotope Probing the Nitrogen Cycle: Current Applications and Future Directions; Introduction; Nitrogen uptake is limited in many environments; The utility of molecular approaches; DNA stable isotope probing; 15N-DNA stable isotope probing; Nitrogen fixation Biodegradation and bioremediationInorganic N cycling; Organic nitrogen; The way forward; Metagenomics; Combining 15N-SIP, metagenomic sequencing and flow cytometry; Protein stable isotope probing; Chip stable isotope probing; Conclusions; 6: Application of Metaproteomics to the Exploration of Microbial N-cycling Communities; Introduction; Metaproteomics and the nitrogen cycle; Protein-SIP and the nitrogen cycle; Proteomics of microbial isolates relevant to the nitrogen cycle; Conclusions; Future trends 7: Functional Molecular Analysis of Microbial Nitrogen Cycle by Microarray-based GeoChip: Insights for Climate Change, Agriculture and Other Ecological StudiesIntroduction; Microarray technology and functional gene array; GeoChip technology; GeoChip application in investigating N functional genes; Challenges for GeoChip technology and future directions; 8: Functional and Taxonomic Diversity of the Nitrogen Cycling Guild in the Sargasso Sea Metagenomes; Introduction; Taxonomic diversity of the Sargasso Sea microbial communities; Functional diversity of the N-cycling guild in the Sargasso Sea DiscussionExclusion by filtering; A cautionary tale on ignoring the masses; Future trends; 9: Microbial Nitrogen Cycle: Determination of Microbial Functional Activities and Related N-compounds in Environmental Samples; Introduction; Microbial functional activities of the N-cycle; Determination of some N-compounds relative to the N-cycle; 10: Functional Metagenomics of the Nitrogen Cycle in Freshwater Lakes with Focus on Methylotrophic Bacteria; Introduction; Functional metagenomics uncover the dominant methylotrophs, Methylobacter and Methylotenera, and identify nitrogen metabolism strategies Nitrate supplement causes specific responses by the Methylophilaceae ecotypes |
| Record Nr. | UNINA-9910827860103321 |
| Norfolk, England : , : Caister Academic Press, , [2014] | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||