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Bioinformatics algorithms : techniques and applications / / edited by Ion I. Mandoiu and Alexander Zelikovsky
| Bioinformatics algorithms : techniques and applications / / edited by Ion I. Mandoiu and Alexander Zelikovsky |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Interscience, c2008 |
| Descrizione fisica | 1 online resource (517 p.) |
| Disciplina | 572.80285 |
| Altri autori (Persone) |
MandoiuIon
ZelikovskyAlexander |
| Collana | Wiley series on bioinformatics |
| Soggetto topico |
Bioinformatics
Algorithms |
| ISBN |
1-281-23744-2
9786611237448 0-470-25344-4 0-470-25342-8 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
BIOINFORMATICS ALGORITHMS; CONTENTS; Preface; Contributors; 1 Educating Biologists in the 21st Century: Bioinformatics Scientists versus Bioinformatics Technicians; PART I TECHNIQUES; 2 Dynamic Programming Algorithms for Biological Sequence and Structure Comparison; 3 Graph Theoretical Approaches to Delineate Dynamics of Biological Processes; 4 Advances in Hidden Markov Models for Sequence Annotation; 5 Sorting- and FFT-Based Techniques in the Discovery of Biopatterns; 6 A Survey of Seeding for Sequence Alignment; 7 The Comparison of Phylogenetic Networks: Algorithms and Complexity
PART II GENOME AND SEQUENCE ANALYSIS8 Formal Models of Gene Clusters; 9 Integer Linear Programming Techniques for Discovering Approximate Gene Clusters; 10 Efficient Combinatorial Algorithms for DNA Sequence Processing; 11 Algorithms for Multiplex PCR Primer Set Selection with Amplification Length Constraints; 12 Recent Developments in Alignment and Motif Finding for Sequences and Networks; PART III MICROARRAY DESIGN AND DATA ANALYSIS; 13 Algorithms for Oligonucleotide Microarray Layout; 14 Classification Accuracy Based Microarray Missing Value Imputation; 15 Meta-Analysis of Microarray Data PART IV GENETIC VARIATION ANALYSIS16 Phasing Genotypes Using a Hidden Markov Model; 17 Analytical and Algorithmic Methods for Haplotype Frequency Inference: What Do They Tell Us?; 18 Optimization Methods for Genotype Data Analysis in Epidemiological Studies; PART V STRUCTURAL AND SYSTEMS BIOLOGY; 19 Topological Indices in Combinatorial Chemistry; 20 Efficient Algorithms for Structural Recall in Databases; 21 Computational Approaches to Predict Protein-Protein and Domain-Domain Interactions; Index |
| Record Nr. | UNINA-9910823387503321 |
| Hoboken, N.J., : Wiley-Interscience, c2008 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics Research and Applications [[electronic resource] ] : 16th International Symposium, ISBRA 2020, Moscow, Russia, December 1–4, 2020, Proceedings / / edited by Zhipeng Cai, Ion Mandoiu, Giri Narasimhan, Pavel Skums, Xuan Guo
| Bioinformatics Research and Applications [[electronic resource] ] : 16th International Symposium, ISBRA 2020, Moscow, Russia, December 1–4, 2020, Proceedings / / edited by Zhipeng Cai, Ion Mandoiu, Giri Narasimhan, Pavel Skums, Xuan Guo |
| Edizione | [1st ed. 2020.] |
| Pubbl/distr/stampa | Cham : , : Springer International Publishing : , : Imprint : Springer, , 2020 |
| Descrizione fisica | 1 online resource (XIV, 418 p. 143 illus., 110 illus. in color.) |
| Disciplina | 572.80285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Bioinformatics
Computers Artificial intelligence Computer organization Information Systems and Communication Service Artificial Intelligence Computer Systems Organization and Communication Networks Computational Biology/Bioinformatics |
| ISBN | 3-030-57821-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA Samples -- Signet Ring Cell Detection with Classi cation Reinforcement Detection Network -- SPOC: Identification of Drug Targets in Biological Networks via Set Preference Output Control -- Identification of a novel compound heterozygous variant in NBAS causing bone fragility by the type of osteogenesis imperfecta -- Isoform-disease association prediction by data fusion -- EpIntMC: Detecting Epistatic Interactions using Multiple Clusterings -- Improving Metagenomic Classi cation using discriminative k-mers from sequencing data -- Dilated-DenseNet For Macromolecule Classifi cation In Cryo-electron Tomography -- Ess-NEXG: Predict Essential Proteins by Constructing a Weighted -- Protein Interaction Network based on Node Embedding and XGBoost -- mapAlign: an efficient approach for mapping and aligning long reads to reference genomes -- Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer -- Testing the Agreement of Trees with Internal Labels -- SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data -- De novo prediction of drug-target interaction via Laplacian regularized Schatten-p norm minimization -- Diagnosis of ASD from rs-fMRIs based on brain dynamic networks -- miRNA-Disease Associations Prediction Based on Negative Sample Selection and Multi-layer Perceptron -- Checking Phylogenetic Decisiveness in Theory and in Practice -- TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity -- Cancer breakpoint hotspots versus individual breakpoints prediction by machine learning models -- Integer Linear Programming Formulation for the Uni ed DuplicationLoss-Coalescence Model -- In silico-guided discovery of potential HIV-1 entry inhibitors mimicking bNAb N6: virtual screening, docking, molecular dynamics, and post-molecular modeling analysis -- Learning Structural Genetic Information via Graph Neural Embedding -- A New Network-based Tool to Analyse Competing Endogenous RNAs -- Deep Ensemble models for 16S Ribosomal Gene Classification -- Search for tandem repeats in the rst chromosome from the rice genome -- Deep Learning approach with rotate-shift invariant input to predict protein homodimer structure -- Development of a Neural Network-Based Approach for Prediction of Potential HIV-1 Entry Inhibitors Using Deep Learning and Molecular Modeling Methods -- In Silico Design and Evaluation of Novel Triazole-Based Compounds as Promising Drug Candidates Against Breast Cancer -- Identification of essential genes with NemoPro le and various machine learning models -- NemoLib: Network Motif Libraries for network motif detection and analysis -- Estimating enzyme participation in metabolic pathways for microbial communities from RNA-seq data -- Identication of Virus-Receptor Interactions based on Network Enhancement and Similarity -- Enhanced functional pathway annotations for differentially expressed gene clusters -- Automated Detection of Sleep Apnea from Abdominal Respiratory Signal using Hilbert-Huang Transform -- Na/K-ATPase glutathionylation: in silico modeling of reaction mechanisms -- HiChew: a tool for TAD clustering in embryogenesis -- Generation of Hi-C maps from DNA sequence data using Deep Learning -- SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis -- Quantitative analysis of the dynamics of maternal gradients in the early Drosophila embryo -- Atom Tracking Using Cayley Graphs -- SPOC: Identification of Drug Targets in Biological Networks via Set Preference Output Control -- Identification of a novel compound heterozygous variant in NBAS causing bone fragility by the type of osteogenesis imperfecta. . |
| Record Nr. | UNISA-996418310203316 |
| Cham : , : Springer International Publishing : , : Imprint : Springer, , 2020 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics Research and Applications : 16th International Symposium, ISBRA 2020, Moscow, Russia, December 1–4, 2020, Proceedings / / edited by Zhipeng Cai, Ion Mandoiu, Giri Narasimhan, Pavel Skums, Xuan Guo
| Bioinformatics Research and Applications : 16th International Symposium, ISBRA 2020, Moscow, Russia, December 1–4, 2020, Proceedings / / edited by Zhipeng Cai, Ion Mandoiu, Giri Narasimhan, Pavel Skums, Xuan Guo |
| Edizione | [1st ed. 2020.] |
| Pubbl/distr/stampa | Cham : , : Springer International Publishing : , : Imprint : Springer, , 2020 |
| Descrizione fisica | 1 online resource (XIV, 418 p. 143 illus., 110 illus. in color.) |
| Disciplina |
572.80285
570.285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Bioinformatics
Computers Artificial intelligence Computer organization Information Systems and Communication Service Artificial Intelligence Computer Systems Organization and Communication Networks Computational Biology/Bioinformatics |
| ISBN | 3-030-57821-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Mitochondrial Haplogroup Assignment for High-Throughput Sequencing Data from Single Individual and Mixed DNA Samples -- Signet Ring Cell Detection with Classi cation Reinforcement Detection Network -- SPOC: Identification of Drug Targets in Biological Networks via Set Preference Output Control -- Identification of a novel compound heterozygous variant in NBAS causing bone fragility by the type of osteogenesis imperfecta -- Isoform-disease association prediction by data fusion -- EpIntMC: Detecting Epistatic Interactions using Multiple Clusterings -- Improving Metagenomic Classi cation using discriminative k-mers from sequencing data -- Dilated-DenseNet For Macromolecule Classifi cation In Cryo-electron Tomography -- Ess-NEXG: Predict Essential Proteins by Constructing a Weighted -- Protein Interaction Network based on Node Embedding and XGBoost -- mapAlign: an efficient approach for mapping and aligning long reads to reference genomes -- Functional Evolutionary Modeling Exposes Overlooked Protein-Coding Genes Involved in Cancer -- Testing the Agreement of Trees with Internal Labels -- SVLR: Genome Structure Variant Detection Using Long Read Sequencing Data -- De novo prediction of drug-target interaction via Laplacian regularized Schatten-p norm minimization -- Diagnosis of ASD from rs-fMRIs based on brain dynamic networks -- miRNA-Disease Associations Prediction Based on Negative Sample Selection and Multi-layer Perceptron -- Checking Phylogenetic Decisiveness in Theory and in Practice -- TNet: Phylogeny-Based Inference of Disease Transmission Networks Using Within-Host Strain Diversity -- Cancer breakpoint hotspots versus individual breakpoints prediction by machine learning models -- Integer Linear Programming Formulation for the Uni ed DuplicationLoss-Coalescence Model -- In silico-guided discovery of potential HIV-1 entry inhibitors mimicking bNAb N6: virtual screening, docking, molecular dynamics, and post-molecular modeling analysis -- Learning Structural Genetic Information via Graph Neural Embedding -- A New Network-based Tool to Analyse Competing Endogenous RNAs -- Deep Ensemble models for 16S Ribosomal Gene Classification -- Search for tandem repeats in the rst chromosome from the rice genome -- Deep Learning approach with rotate-shift invariant input to predict protein homodimer structure -- Development of a Neural Network-Based Approach for Prediction of Potential HIV-1 Entry Inhibitors Using Deep Learning and Molecular Modeling Methods -- In Silico Design and Evaluation of Novel Triazole-Based Compounds as Promising Drug Candidates Against Breast Cancer -- Identification of essential genes with NemoPro le and various machine learning models -- NemoLib: Network Motif Libraries for network motif detection and analysis -- Estimating enzyme participation in metabolic pathways for microbial communities from RNA-seq data -- Identication of Virus-Receptor Interactions based on Network Enhancement and Similarity -- Enhanced functional pathway annotations for differentially expressed gene clusters -- Automated Detection of Sleep Apnea from Abdominal Respiratory Signal using Hilbert-Huang Transform -- Na/K-ATPase glutathionylation: in silico modeling of reaction mechanisms -- HiChew: a tool for TAD clustering in embryogenesis -- Generation of Hi-C maps from DNA sequence data using Deep Learning -- SC1: A Tool for Interactive Web-Based Single Cell RNA-Seq Data Analysis -- Quantitative analysis of the dynamics of maternal gradients in the early Drosophila embryo -- Atom Tracking Using Cayley Graphs -- SPOC: Identification of Drug Targets in Biological Networks via Set Preference Output Control -- Identification of a novel compound heterozygous variant in NBAS causing bone fragility by the type of osteogenesis imperfecta. . |
| Record Nr. | UNINA-9910416081303321 |
| Cham : , : Springer International Publishing : , : Imprint : Springer, , 2020 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics Research and Applications [[electronic resource] ] : 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings / / edited by Leonidas Bleris, Ion Mandoiu, Russell Schwartz, Jianxin Wang
| Bioinformatics Research and Applications [[electronic resource] ] : 8th International Symposium, ISBRA 2012, Dallas, TX, USA, May 21-23, 2012. Proceedings / / edited by Leonidas Bleris, Ion Mandoiu, Russell Schwartz, Jianxin Wang |
| Edizione | [1st ed. 2012.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2012 |
| Descrizione fisica | 1 online resource (XIII, 332 p. 91 illus.) |
| Disciplina | 570.285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Bioinformatics
Data mining Application software Algorithms Pattern recognition Bioinformatics Computational biology Computational Biology/Bioinformatics Data Mining and Knowledge Discovery Information Systems Applications (incl. Internet) Algorithm Analysis and Problem Complexity Pattern Recognition Computer Appl. in Life Sciences |
| ISBN | 3-642-30191-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Record Nr. | UNISA-996465776703316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2012 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics Research and Applications [[electronic resource] ] : 5th International Symposium, ISBRA 2009 Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings / / edited by Ion Mandoiu, Giri Narasimhan, Yanqing Zhang
| Bioinformatics Research and Applications [[electronic resource] ] : 5th International Symposium, ISBRA 2009 Fort Lauderdale, FL, USA, May 13-16, 2009, Proceedings / / edited by Ion Mandoiu, Giri Narasimhan, Yanqing Zhang |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 |
| Descrizione fisica | 1 online resource (XVII, 336 p.) |
| Disciplina | 570 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Data mining Computer graphics Bioinformatics Bioinformatics Computational biology Life Sciences, general Data Mining and Knowledge Discovery Computer Graphics Computational Biology/Bioinformatics Computer Appl. in Life Sciences |
| ISBN | 3-642-01551-4 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk) -- Integrating Multiple-Platform Expression Data through Gene Set Features -- Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression -- Mean Square Residue Biclustering with Missing Data and Row Inversions -- Using Gene Expression Modeling to Determine Biological Relevance of Putative Regulatory Networks -- Querying Protein-Protein Interaction Networks -- Integrative Approach for Combining TNF?-NF?B Mathematical Model to a Protein Interaction Connectivity Map -- Hierarchical Organization of Functional Modules in Weighted Protein Interaction Networks Using Clustering Coefficient -- Bioinformatics Challenges in Translational Research -- Untangling Tanglegrams: Comparing Trees by Their Drawings -- An Experimental Analysis of Consensus Tree Algorithms for Large-Scale Tree Collections -- Counting Faces in Split Networks -- Relationship between Amino Acids Sequences and Protein Structures: Folding Patterns and Sequence Patterns -- Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots -- Efficient Algorithms for Self Assembling Triangular and Other Nano Structures -- Motif Construction from High–Throughput SELEX Data -- Rearrangement Phylogeny of Genomes in Contig Form -- Prediction of Contiguous Regions in the Amniote Ancestral Genome -- Pure Parsimony Xor Haplotyping -- A Decomposition of the Pure Parsimony Haplotyping Problem -- Exact Computation of Coalescent Likelihood under the Infinite Sites Model -- Imputation-Based Local Ancestry Inference in Admixed Populations -- Interpreting Population Sequencing Data -- Modeling and Visualizing Heterogeneity of Spatial Patterns of Protein-DNA Interaction from High-Density Chromatin Precipitation Mapping Data -- A Linear-Time Algorithm for Analyzing Array CGH Data Using Log Ratio Triangulation -- Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing -- Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates -- A Class of Evolution-Based Kernels for Protein Homology Analysis: A Generalization of the PAM Model -- Irreplaceable Amino Acids and Reduced Alphabets in Short-Term and Directed Protein Evolution -- A One-Class Classification Approach for Protein Sequences and Structures -- Prediction and Classification of Real and Pseudo MicroRNA Precursors via Data Fuzzification and Fuzzy Decision Trees. |
| Record Nr. | UNISA-996466020103316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics research and applications : 5th international symposium, ISBRA 2009, Fort Lauderdale, FL, USA, May 13-16, 2009 ; proceedings / / Ion Mandoiu, Giri Narasimhan, Yanqing Zhang (eds.)
| Bioinformatics research and applications : 5th international symposium, ISBRA 2009, Fort Lauderdale, FL, USA, May 13-16, 2009 ; proceedings / / Ion Mandoiu, Giri Narasimhan, Yanqing Zhang (eds.) |
| Edizione | [1st ed. 2009.] |
| Pubbl/distr/stampa | Berlin, : Springer, c2009 |
| Descrizione fisica | 1 online resource (XVII, 336 p.) |
| Disciplina | 570 |
| Altri autori (Persone) |
MandoiuIon
NaraimhanGiri ZhangYanqing |
| Collana |
Lecture notes in computer science
Lecture notes in bioinformatics |
| Soggetto topico |
Bioinformatics
Computational biology |
| ISBN | 3-642-01551-4 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Evolution of Regulatory Systems in Bacteria (Invited Keynote Talk) -- Integrating Multiple-Platform Expression Data through Gene Set Features -- Practical Quality Assessment of Microarray Data by Simulation of Differential Gene Expression -- Mean Square Residue Biclustering with Missing Data and Row Inversions -- Using Gene Expression Modeling to Determine Biological Relevance of Putative Regulatory Networks -- Querying Protein-Protein Interaction Networks -- Integrative Approach for Combining TNF?-NF?B Mathematical Model to a Protein Interaction Connectivity Map -- Hierarchical Organization of Functional Modules in Weighted Protein Interaction Networks Using Clustering Coefficient -- Bioinformatics Challenges in Translational Research -- Untangling Tanglegrams: Comparing Trees by Their Drawings -- An Experimental Analysis of Consensus Tree Algorithms for Large-Scale Tree Collections -- Counting Faces in Split Networks -- Relationship between Amino Acids Sequences and Protein Structures: Folding Patterns and Sequence Patterns -- Improved Algorithms for Parsing ESLTAGs: A Grammatical Model Suitable for RNA Pseudoknots -- Efficient Algorithms for Self Assembling Triangular and Other Nano Structures -- Motif Construction from High–Throughput SELEX Data -- Rearrangement Phylogeny of Genomes in Contig Form -- Prediction of Contiguous Regions in the Amniote Ancestral Genome -- Pure Parsimony Xor Haplotyping -- A Decomposition of the Pure Parsimony Haplotyping Problem -- Exact Computation of Coalescent Likelihood under the Infinite Sites Model -- Imputation-Based Local Ancestry Inference in Admixed Populations -- Interpreting Population Sequencing Data -- Modeling and Visualizing Heterogeneity of Spatial Patterns of Protein-DNA Interaction from High-Density Chromatin Precipitation Mapping Data -- A Linear-Time Algorithm for Analyzing Array CGH Data Using Log Ratio Triangulation -- Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing -- Analysis of Cis-Regulatory Motifs in Cassette Exons by Incorporating Exon Skipping Rates -- A Class of Evolution-Based Kernels for Protein Homology Analysis: A Generalization of the PAM Model -- Irreplaceable Amino Acids and Reduced Alphabets in Short-Term and Directed Protein Evolution -- A One-Class Classification Approach for Protein Sequences and Structures -- Prediction and Classification of Real and Pseudo MicroRNA Precursors via Data Fuzzification and Fuzzy Decision Trees. |
| Record Nr. | UNINA-9910484763503321 |
| Berlin, : Springer, c2009 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics Research and Applications [[electronic resource] ] : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky
| Bioinformatics Research and Applications [[electronic resource] ] : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky |
| Edizione | [1st ed. 2008.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 |
| Descrizione fisica | 1 online resource (XIX, 510 p.) |
| Disciplina | 570.285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computers Bioinformatics Pattern recognition Data mining Life Sciences, general Theory of Computation Computational Biology/Bioinformatics Computation by Abstract Devices Pattern Recognition Data Mining and Knowledge Discovery |
| ISBN |
1-281-85508-1
3-540-79450-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Keynote Talk: Set-Level Analyses for Genome-Wide Association Data -- Hierarchical Clustering Using Constraints -- The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches -- A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes -- An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic Analysis -- Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences -- Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition -- Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats -- Improved Alignment of Protein Sequences Based on Common Parts -- Invited Keynote Talk: Computing P-Values for Peptide Identifications in Mass Spectrometry -- PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes -- Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure -- Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution -- Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure -- HCV Quasispecies Assembly Using Network Flows -- A Dynamic Programming Algorithm for De Novo Peptide Sequencing with Variable Scoring -- Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies -- Incorporating Literature Knowledge in Bayesian Network for Inferring Gene Networks with Gene Expression Data -- Integrative Network Component Analysis for Regulatory Network Reconstruction -- A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks -- Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph -- Mean Squared Residue Based Biclustering Algorithms -- Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information -- A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution -- Network-Based Inference of Cancer Progression from Microarray Data -- Invited Keynote Talk: Quiet Revolution: Connectivity in the Cancer Research Community -- Wavelet-Based 3-D Multifractal Spectrum with Applications in Breast MRI Images -- Accurate Inverse Consistent Non-rigid Image Registration and Its Application on Automatic Re-contouring -- GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies -- Pattern Matching in RNA Structures -- The Use of a Conformational Alphabet for Fast Alignment of Protein Structures -- On-the-Fly Rotamer Pair Energy Evaluation in Protein Design -- Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling -- Multiple Kernel Support Vector Regression for siRNA Efficacy Prediction -- Hierarchical Clustering Support Vector Machines for Classifying Type-2 Diabetes Patients -- Computational Mutagenesis of E. coli Lac Repressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity -- Evaluating Genetic Algorithms in Protein-Ligand Docking -- A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling -- Evolutionary Algorithm for Feature Subset Selection in Predicting Tumor Outcomes Using Microarray Data -- Incorporating Knowledge of Topology Improves Reconstruction of Interaction Networks from Microarray Data -- Invited Keynote Talk: Data Mining and Statistical Methods for Analyzing Microarray Experiments -- Seven Variations of an Alignment Workflow - An Illustration of Agile Process Design and Management in Bio-jETI -- Supporting Computational Systems Science: Genomic Analysis Tool Federations Using Aspects and AOP -- BioDQ: Data Quality Estimation and Management for Genomics Databases -- Stepped Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis -- Bagging Multiple Comparisons from Microarray Data -- Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products. |
| Record Nr. | UNISA-996465879503316 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
| ||
Bioinformatics Research and Applications : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky
| Bioinformatics Research and Applications : Fourth International Symposium, ISBRA 2008, Atlanta, GA, USA, May 6-9, 2008, Proceedings / / edited by Ion Mandoiu, Rajshekhar Sunderraman, Alexander Zelikovsky |
| Edizione | [1st ed. 2008.] |
| Pubbl/distr/stampa | Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 |
| Descrizione fisica | 1 online resource (XIX, 510 p.) |
| Disciplina | 570.285 |
| Collana | Lecture Notes in Bioinformatics |
| Soggetto topico |
Life sciences
Computers Bioinformatics Pattern recognition Data mining Life Sciences, general Theory of Computation Computational Biology/Bioinformatics Computation by Abstract Devices Pattern Recognition Data Mining and Knowledge Discovery |
| ISBN |
1-281-85508-1
3-540-79450-6 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | Invited Keynote Talk: Set-Level Analyses for Genome-Wide Association Data -- Hierarchical Clustering Using Constraints -- The Gene-Duplication Problem: Near-Linear Time Algorithms for NNI Based Local Searches -- A Distance-Based Method for Detecting Horizontal Gene Transfer in Whole Genomes -- An Approach for Determining Evolutionary Distance in Network-Based Phylogenetic Analysis -- Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences -- Estimating Pairwise Statistical Significance of Protein Local Alignments Using a Clustering-Classification Approach Based on Amino Acid Composition -- Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats -- Improved Alignment of Protein Sequences Based on Common Parts -- Invited Keynote Talk: Computing P-Values for Peptide Identifications in Mass Spectrometry -- PFP: A Computational Framework for Phylogenetic Footprinting in Prokaryotic Genomes -- Accelerating the Neighbor-Joining Algorithm Using the Adaptive Bucket Data Structure -- Generalized Gene Adjacencies, Graph Bandwidth and Clusters in Yeast Evolution -- Physicochemical Correlation between Amino Acid Sites in Short Sequences under Selective Pressure -- HCV Quasispecies Assembly Using Network Flows -- A Dynamic Programming Algorithm for De Novo Peptide Sequencing with Variable Scoring -- Invited Keynote Talk: Haplotype Sharing for Genome-Wide Case-Control Association Studies -- Incorporating Literature Knowledge in Bayesian Network for Inferring Gene Networks with Gene Expression Data -- Integrative Network Component Analysis for Regulatory Network Reconstruction -- A Graph-Theoretic Method for Mining Overlapping Functional Modules in Protein Interaction Networks -- Identification of Transcription Factor Binding Sites in Promoter Regions by Modularity Analysis of the Motif Co-occurrence Graph -- Mean Squared Residue Based Biclustering Algorithms -- Sparse Decomposition of Gene Expression Data to Infer Transcriptional Modules Guided by Motif Information -- A Novel Metric for Redundant Gene Elimination Based on Discriminative Contribution -- Network-Based Inference of Cancer Progression from Microarray Data -- Invited Keynote Talk: Quiet Revolution: Connectivity in the Cancer Research Community -- Wavelet-Based 3-D Multifractal Spectrum with Applications in Breast MRI Images -- Accurate Inverse Consistent Non-rigid Image Registration and Its Application on Automatic Re-contouring -- GlycoBrowser: A Tool for Contextual Visualization of Biological Data and Pathways Using Ontologies -- Pattern Matching in RNA Structures -- The Use of a Conformational Alphabet for Fast Alignment of Protein Structures -- On-the-Fly Rotamer Pair Energy Evaluation in Protein Design -- Invited Keynote Talk: Integrative Viral Molecular Epidemiology: Hepatitis C Virus Modeling -- Multiple Kernel Support Vector Regression for siRNA Efficacy Prediction -- Hierarchical Clustering Support Vector Machines for Classifying Type-2 Diabetes Patients -- Computational Mutagenesis of E. coli Lac Repressor: Insight into Structure-Function Relationships and Accurate Prediction of Mutant Activity -- Evaluating Genetic Algorithms in Protein-Ligand Docking -- A Hidden Markov Model Approach for Prediction of Genomic Alterations from Gene Expression Profiling -- Evolutionary Algorithm for Feature Subset Selection in Predicting Tumor Outcomes Using Microarray Data -- Incorporating Knowledge of Topology Improves Reconstruction of Interaction Networks from Microarray Data -- Invited Keynote Talk: Data Mining and Statistical Methods for Analyzing Microarray Experiments -- Seven Variations of an Alignment Workflow - An Illustration of Agile Process Design and Management in Bio-jETI -- Supporting Computational Systems Science: Genomic Analysis Tool Federations Using Aspects and AOP -- BioDQ: Data Quality Estimation and Management for Genomics Databases -- Stepped Linear Regression to Accurately Assess Statistical Significance in Batch Confounded Differential Expression Analysis -- Bagging Multiple Comparisons from Microarray Data -- Human Blood-Brain Differential Gene-Expression Correlates with Dipeptide Frequency of Gene Products. |
| Record Nr. | UNINA-9910484859103321 |
| Berlin, Heidelberg : , : Springer Berlin Heidelberg : , : Imprint : Springer, , 2008 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||