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Bioinformatics [[electronic resource] ] : managing scientific data / / edited by Zoé Lacroix and Terence Critchlow
| Bioinformatics [[electronic resource] ] : managing scientific data / / edited by Zoé Lacroix and Terence Critchlow |
| Edizione | [1st edition] |
| Pubbl/distr/stampa | San Francisco, CA, : Morgan Kaufmann Publishers, c2003 |
| Descrizione fisica | 1 online resource (465 p.) |
| Disciplina | 570/.285 |
| Altri autori (Persone) |
LacroixZoé
CritchlowTerence |
| Collana | The Morgan Kaufmann series in multimedia information and systems |
| Soggetto topico | Bioinformatics |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-281-07813-1
9786611078133 0-08-052798-1 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Bioinformatics: Managing Scientific Data; Copyright Page; Contents; Preface; Chapter 1. Introduction; 1.1 Overview; 1.2 Problem and Scope; 1.3 Biological Data Integration; 1.4 Developing a Biological Data Integration System; References; Chapter 2. Challenges Faced in the Integration of Biological Information; 2.1 The Life Science Discovery Process; 2.2 An Information Integration Environment for Life Science Discovery; 2.3 The Nature of Biological Data; 2.4 Data Sources in Life Science; 2.5 Challenges in Information Integration; Conclusion; References
Chapter 3. A Practitioner's Guide to Data Management and Data Integration in Bioinformatics3.1 Introduction; 3.2 Data Management in Bioinformatics; 3.3 Dimensions Describing the Space of Integration Solutions; 3.4 Use Cases of Integration Solutions; 3.5 Strengths and Weaknesses of the Various Approaches to Integration; 3.6 Tough Problems in Bioinformatics Integration; 3.7 Summary; Acknowledgments; References; Chapter 4. Issues to Address While Designing a Biological Information System; 4.1 Legacy; 4.2 A Domain in Constant Evolution; 4.3 Biological Queries; 4.4 Query Processing 4.5 Visualization4.6 Conclusion; Acknowledgments; References; Chapter 5. SRS: An Integration Platform for Databanks and Analysis Tools in Bioinformatics; 5.1 Integrating Flat File Databanks; 5.2 Integration of XML Databases; 5.3 Integrating Relational Databases; 5.4 The SRS Query Language; 5.5 Linking Databanks; 5.6 The Object Loader; 5.7 Scientific Analysis Tools; 5.8 Interfaces to SRS; 5.9 Automated Server Maintenance with SRS Prisma; 5.10 Conclusion; References; Chapter 6. The Kleisli Query System as a Backbone for Bioinformatics Data Integration and Analysis; 6.1 Motivating Example 6.2 Approach6.3 Data Model and Representation; 6.4 Query Capability; 6.5 Warehousing Capability; 6.6 Data Sources; 6.7 Optimizations; 6.8 User Interfaces; 6.9 Other Data Integration Technologies; 6.10 Conclusions; References; Chapter 7. Complex Query Formulation Over Diverse Information Sources in TAMBIS; 7.1 The Ontology; 7.2 The User Interface; 7.3 The Query Processor; 7.4 Related Work; 7.5 Current and Future Developments in TAMBIS; Acknowledgments; References; Chapter 8. The Information Integration System K2; 8.1 Approach; 8.2 Data Model and Languages; 8.3 An Example; 8.4 Internal Language 8.5 Data Sources8.6 Query Optimization; 8.7 User Interfaces; 8.8 Scalability; 8.9 Impact; 8.10 Summary; Acknowledgments; References; Chapter 9. P/FDM Mediator for a Bioinformatics Database Federation; 9.1 Approach; 9.2 Analysis; 9.3 Conclusions; Acknowledgment; References; Chapter 10. Integration Challenges in Gene Expression Data Management; 10.1 Gene Expression Data Management: Background; 10.2 The GeneExpress System; 10.3 Managing Gene Expression Data: Integration Challenges; 10.4 Integrating Third-Party Gene Expression Data in GeneExpress; 10.5 Summary; Acknowledgments; Trademarks References |
| Record Nr. | UNINA-9910458233803321 |
| San Francisco, CA, : Morgan Kaufmann Publishers, c2003 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Bioinformatics [[electronic resource] ] : managing scientific data / / edited by Zoé Lacroix and Terence Critchlow
| Bioinformatics [[electronic resource] ] : managing scientific data / / edited by Zoé Lacroix and Terence Critchlow |
| Edizione | [1st edition] |
| Pubbl/distr/stampa | San Francisco, CA, : Morgan Kaufmann Publishers, c2003 |
| Descrizione fisica | 1 online resource (465 p.) |
| Disciplina | 570/.285 |
| Altri autori (Persone) |
LacroixZoé
CritchlowTerence |
| Collana | The Morgan Kaufmann series in multimedia information and systems |
| Soggetto topico | Bioinformatics |
| ISBN |
1-281-07813-1
9786611078133 0-08-052798-1 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Bioinformatics: Managing Scientific Data; Copyright Page; Contents; Preface; Chapter 1. Introduction; 1.1 Overview; 1.2 Problem and Scope; 1.3 Biological Data Integration; 1.4 Developing a Biological Data Integration System; References; Chapter 2. Challenges Faced in the Integration of Biological Information; 2.1 The Life Science Discovery Process; 2.2 An Information Integration Environment for Life Science Discovery; 2.3 The Nature of Biological Data; 2.4 Data Sources in Life Science; 2.5 Challenges in Information Integration; Conclusion; References
Chapter 3. A Practitioner's Guide to Data Management and Data Integration in Bioinformatics3.1 Introduction; 3.2 Data Management in Bioinformatics; 3.3 Dimensions Describing the Space of Integration Solutions; 3.4 Use Cases of Integration Solutions; 3.5 Strengths and Weaknesses of the Various Approaches to Integration; 3.6 Tough Problems in Bioinformatics Integration; 3.7 Summary; Acknowledgments; References; Chapter 4. Issues to Address While Designing a Biological Information System; 4.1 Legacy; 4.2 A Domain in Constant Evolution; 4.3 Biological Queries; 4.4 Query Processing 4.5 Visualization4.6 Conclusion; Acknowledgments; References; Chapter 5. SRS: An Integration Platform for Databanks and Analysis Tools in Bioinformatics; 5.1 Integrating Flat File Databanks; 5.2 Integration of XML Databases; 5.3 Integrating Relational Databases; 5.4 The SRS Query Language; 5.5 Linking Databanks; 5.6 The Object Loader; 5.7 Scientific Analysis Tools; 5.8 Interfaces to SRS; 5.9 Automated Server Maintenance with SRS Prisma; 5.10 Conclusion; References; Chapter 6. The Kleisli Query System as a Backbone for Bioinformatics Data Integration and Analysis; 6.1 Motivating Example 6.2 Approach6.3 Data Model and Representation; 6.4 Query Capability; 6.5 Warehousing Capability; 6.6 Data Sources; 6.7 Optimizations; 6.8 User Interfaces; 6.9 Other Data Integration Technologies; 6.10 Conclusions; References; Chapter 7. Complex Query Formulation Over Diverse Information Sources in TAMBIS; 7.1 The Ontology; 7.2 The User Interface; 7.3 The Query Processor; 7.4 Related Work; 7.5 Current and Future Developments in TAMBIS; Acknowledgments; References; Chapter 8. The Information Integration System K2; 8.1 Approach; 8.2 Data Model and Languages; 8.3 An Example; 8.4 Internal Language 8.5 Data Sources8.6 Query Optimization; 8.7 User Interfaces; 8.8 Scalability; 8.9 Impact; 8.10 Summary; Acknowledgments; References; Chapter 9. P/FDM Mediator for a Bioinformatics Database Federation; 9.1 Approach; 9.2 Analysis; 9.3 Conclusions; Acknowledgment; References; Chapter 10. Integration Challenges in Gene Expression Data Management; 10.1 Gene Expression Data Management: Background; 10.2 The GeneExpress System; 10.3 Managing Gene Expression Data: Integration Challenges; 10.4 Integrating Third-Party Gene Expression Data in GeneExpress; 10.5 Summary; Acknowledgments; Trademarks References |
| Record Nr. | UNINA-9910784532303321 |
| San Francisco, CA, : Morgan Kaufmann Publishers, c2003 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||