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Proceedings of the 4th Asia-Pacific Bioinformatics Conference [[electronic resource] ] : Taipei, Taiwan, 13-16 February 2006 / / editors, Tao Jiang ... [et al.]
| Proceedings of the 4th Asia-Pacific Bioinformatics Conference [[electronic resource] ] : Taipei, Taiwan, 13-16 February 2006 / / editors, Tao Jiang ... [et al.] |
| Pubbl/distr/stampa | London, : Imperial College Press |
| Descrizione fisica | 1 online resource (379 p.) |
| Disciplina | 572.0285 |
| Altri autori (Persone) | JiangTao <1963-> |
| Collana | Series on advances in bioinformatics and computational biology |
| Soggetto topico |
Bioinformatics
Biology - Data processing |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-281-86710-1
9786611867102 1-86094-729-8 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Preface; APBC 2006 Organization; Programme Committee; CONTENTS; Keynote Papers; Contributed Papers; Wen-Hsiung Li. On the Inference of Regulatory Elements, Circuits and Modules; Mark A. Ragan. Automating the Search for Lateral Gene Transfer; Michael S. Waterman. Whole Genome Optical Mapping; D.A. Konovalov. Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors; 1 Introduction; 2 Method; 2.1 Accuracy; 2.2 Simulations; 3 Algorithms; 3.1 The Modified SIMPSON (MS2) Algorithm; 3.2 The SIMPSON-assisted Descending Ratio (SDR) Algorithm
4 Results and Discussion Acknowledgments; References; P.C.H. Ma & K.C.C. Chan. Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic Approach; 1 Introduction; 2 The proposed algorithm; 2.1. Linguistic variables and linguistic terms representation; 2.2. Discovering the interesting patterns; 2.3. Prediction based on the discovered patterns; 3 Experimental results; 3.1. Experimental data; 3.2. Method of evaluating the results; 3.3. Results; 3.4. Biological interpretation; 4 Conclusions; References C.W. Li, W.C. Chang, & B.S. Chen. System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis Thaliana 1 Introduction; 2 Dynamic System Description of Circadian Regulatory Model; 3. Assay of the Model; 3.1. Assay of ARX System Model; 3.1.1. Determination of system order; 3.2. Sensitivity Analysis of Circadian System; 3.2.1. Circadian clock frequency assay; 3.2.2. Trans-perturbation assay; 3.2.2.1. Trans-sensitivity rate Y simulation of gene; 3.2.2.2 Trans-expression threshold M1 simulation of gene; 4. Results; 5. Discussion Acknowledgments References; P. Horton, K.-J. Park, T. Obayashi, & K. Nakai. Protein Subcellular Localization Prediction with WOLF PSORT; 1. Introduction; 2. Methods; 2.1. Dataset; 2.1.1. Site Definition; 2.2. WoLF PSORT system; 2.3. Classification; 2.3.1. Candidate Features; 2.3.2. Classification Algorithm; 2.3.3. Extensions for Dual Localization Prediction; 2.3.4. Feature Selection and Weighting; 2.3.5. Reducing Over-reliance on Sequence Similarity; 2.3.6. Evaluation of WoLF PSORT Accuracy; 3. Results; 3.1. Effect of Feature Weighting; 3.2. WoLF PSORT Combined with BLAST 3.3. WoLF PSORT Server 4. Discussion; 4.1. Interpretable Results; 4.2. Evaluation in the Presence of Similar Sequences; 4.3. Predicting Dual Localization; 5. Conclusion; 6. Acknowledgement; References; P.-H. Chi & C.-R. Shyu. Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices; 1. Introduction; 2. Preliminaries; 3. Method; 3.1. Space Partition Algorithm Using C4.5 Decision Tree; 3.2. Mining Training Data and Prediction Model; 4. Experiment; 5. Conclusion; References; D. Ruths & L. Nakhleh. RECOMP: A Parsimony-Based Method for Detecting Recombination 1. Introduction |
| Record Nr. | UNINA-9910450862603321 |
| London, : Imperial College Press | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Proceedings of the 4th Asia-Pacific Bioinformatics Conference [[electronic resource] ] : Taipei, Taiwan, 13-16 February 2006 / / editors, Tao Jiang ... [et al.]
| Proceedings of the 4th Asia-Pacific Bioinformatics Conference [[electronic resource] ] : Taipei, Taiwan, 13-16 February 2006 / / editors, Tao Jiang ... [et al.] |
| Pubbl/distr/stampa | London, : Imperial College Press |
| Descrizione fisica | 1 online resource (379 p.) |
| Disciplina | 572.0285 |
| Altri autori (Persone) | JiangTao <1963-> |
| Collana | Series on advances in bioinformatics and computational biology |
| Soggetto topico |
Bioinformatics
Biology - Data processing |
| ISBN |
1-281-86710-1
9786611867102 1-86094-729-8 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Preface; APBC 2006 Organization; Programme Committee; CONTENTS; Keynote Papers; Contributed Papers; Wen-Hsiung Li. On the Inference of Regulatory Elements, Circuits and Modules; Mark A. Ragan. Automating the Search for Lateral Gene Transfer; Michael S. Waterman. Whole Genome Optical Mapping; D.A. Konovalov. Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors; 1 Introduction; 2 Method; 2.1 Accuracy; 2.2 Simulations; 3 Algorithms; 3.1 The Modified SIMPSON (MS2) Algorithm; 3.2 The SIMPSON-assisted Descending Ratio (SDR) Algorithm
4 Results and Discussion Acknowledgments; References; P.C.H. Ma & K.C.C. Chan. Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic Approach; 1 Introduction; 2 The proposed algorithm; 2.1. Linguistic variables and linguistic terms representation; 2.2. Discovering the interesting patterns; 2.3. Prediction based on the discovered patterns; 3 Experimental results; 3.1. Experimental data; 3.2. Method of evaluating the results; 3.3. Results; 3.4. Biological interpretation; 4 Conclusions; References C.W. Li, W.C. Chang, & B.S. Chen. System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis Thaliana 1 Introduction; 2 Dynamic System Description of Circadian Regulatory Model; 3. Assay of the Model; 3.1. Assay of ARX System Model; 3.1.1. Determination of system order; 3.2. Sensitivity Analysis of Circadian System; 3.2.1. Circadian clock frequency assay; 3.2.2. Trans-perturbation assay; 3.2.2.1. Trans-sensitivity rate Y simulation of gene; 3.2.2.2 Trans-expression threshold M1 simulation of gene; 4. Results; 5. Discussion Acknowledgments References; P. Horton, K.-J. Park, T. Obayashi, & K. Nakai. Protein Subcellular Localization Prediction with WOLF PSORT; 1. Introduction; 2. Methods; 2.1. Dataset; 2.1.1. Site Definition; 2.2. WoLF PSORT system; 2.3. Classification; 2.3.1. Candidate Features; 2.3.2. Classification Algorithm; 2.3.3. Extensions for Dual Localization Prediction; 2.3.4. Feature Selection and Weighting; 2.3.5. Reducing Over-reliance on Sequence Similarity; 2.3.6. Evaluation of WoLF PSORT Accuracy; 3. Results; 3.1. Effect of Feature Weighting; 3.2. WoLF PSORT Combined with BLAST 3.3. WoLF PSORT Server 4. Discussion; 4.1. Interpretable Results; 4.2. Evaluation in the Presence of Similar Sequences; 4.3. Predicting Dual Localization; 5. Conclusion; 6. Acknowledgement; References; P.-H. Chi & C.-R. Shyu. Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices; 1. Introduction; 2. Preliminaries; 3. Method; 3.1. Space Partition Algorithm Using C4.5 Decision Tree; 3.2. Mining Training Data and Prediction Model; 4. Experiment; 5. Conclusion; References; D. Ruths & L. Nakhleh. RECOMP: A Parsimony-Based Method for Detecting Recombination 1. Introduction |
| Record Nr. | UNINA-9910784705803321 |
| London, : Imperial College Press | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Proceedings of the 4th Asia-Pacific Bioinformatics Conference [[electronic resource] ] : Taipei, Taiwan, 13-16 February 2006 / / editors, Tao Jiang ... [et al.]
| Proceedings of the 4th Asia-Pacific Bioinformatics Conference [[electronic resource] ] : Taipei, Taiwan, 13-16 February 2006 / / editors, Tao Jiang ... [et al.] |
| Pubbl/distr/stampa | London, : Imperial College Press |
| Descrizione fisica | 1 online resource (379 p.) |
| Disciplina | 572.0285 |
| Altri autori (Persone) | JiangTao <1963-> |
| Collana | Series on advances in bioinformatics and computational biology |
| Soggetto topico |
Bioinformatics
Biology - Data processing |
| ISBN |
1-281-86710-1
9786611867102 1-86094-729-8 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Preface; APBC 2006 Organization; Programme Committee; CONTENTS; Keynote Papers; Contributed Papers; Wen-Hsiung Li. On the Inference of Regulatory Elements, Circuits and Modules; Mark A. Ragan. Automating the Search for Lateral Gene Transfer; Michael S. Waterman. Whole Genome Optical Mapping; D.A. Konovalov. Accuracy of Four Heuristics for the Full Sibship Reconstruction Problem in the Presence of Genotype Errors; 1 Introduction; 2 Method; 2.1 Accuracy; 2.2 Simulations; 3 Algorithms; 3.1 The Modified SIMPSON (MS2) Algorithm; 3.2 The SIMPSON-assisted Descending Ratio (SDR) Algorithm
4 Results and Discussion Acknowledgments; References; P.C.H. Ma & K.C.C. Chan. Inference of Gene Regulatory Networks from Microarray Data: A Fuzzy Logic Approach; 1 Introduction; 2 The proposed algorithm; 2.1. Linguistic variables and linguistic terms representation; 2.2. Discovering the interesting patterns; 2.3. Prediction based on the discovered patterns; 3 Experimental results; 3.1. Experimental data; 3.2. Method of evaluating the results; 3.3. Results; 3.4. Biological interpretation; 4 Conclusions; References C.W. Li, W.C. Chang, & B.S. Chen. System Identification and Robustness Analysis of the Circadian Regulatory Network via Microarray Data in Arabidopsis Thaliana 1 Introduction; 2 Dynamic System Description of Circadian Regulatory Model; 3. Assay of the Model; 3.1. Assay of ARX System Model; 3.1.1. Determination of system order; 3.2. Sensitivity Analysis of Circadian System; 3.2.1. Circadian clock frequency assay; 3.2.2. Trans-perturbation assay; 3.2.2.1. Trans-sensitivity rate Y simulation of gene; 3.2.2.2 Trans-expression threshold M1 simulation of gene; 4. Results; 5. Discussion Acknowledgments References; P. Horton, K.-J. Park, T. Obayashi, & K. Nakai. Protein Subcellular Localization Prediction with WOLF PSORT; 1. Introduction; 2. Methods; 2.1. Dataset; 2.1.1. Site Definition; 2.2. WoLF PSORT system; 2.3. Classification; 2.3.1. Candidate Features; 2.3.2. Classification Algorithm; 2.3.3. Extensions for Dual Localization Prediction; 2.3.4. Feature Selection and Weighting; 2.3.5. Reducing Over-reliance on Sequence Similarity; 2.3.6. Evaluation of WoLF PSORT Accuracy; 3. Results; 3.1. Effect of Feature Weighting; 3.2. WoLF PSORT Combined with BLAST 3.3. WoLF PSORT Server 4. Discussion; 4.1. Interpretable Results; 4.2. Evaluation in the Presence of Similar Sequences; 4.3. Predicting Dual Localization; 5. Conclusion; 6. Acknowledgement; References; P.-H. Chi & C.-R. Shyu. Predicting Ranked SCOP Domains by Mining Associations of Visual Contents in Distance Matrices; 1. Introduction; 2. Preliminaries; 3. Method; 3.1. Space Partition Algorithm Using C4.5 Decision Tree; 3.2. Mining Training Data and Prediction Model; 4. Experiment; 5. Conclusion; References; D. Ruths & L. Nakhleh. RECOMP: A Parsimony-Based Method for Detecting Recombination 1. Introduction |
| Record Nr. | UNINA-9910816691203321 |
| London, : Imperial College Press | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||