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Biological nitrogen fixation / / edited by Frans J. de Bruijn
| Biological nitrogen fixation / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley-Blackwell, , 2015 |
| Descrizione fisica | 1 online resource (1236 p.) |
| Disciplina | 581.13353 |
| Soggetto topico | Nitrogen - Fixation |
| Soggetto genere / forma | Electronic books. |
| ISBN |
1-118-63721-6
1-119-05309-9 1-118-63709-7 |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Title Page; Copyright; Dedication; Contents; Preface; Acknowledgments; Contributors; Volume 1; Chapter 1. Introduction; 1.1 Free-Living Diazotrophs; 1.2 Symbiotic Nitrogen-Fixing Bacteria; 1.3 Associative Nitrogen-Fixing Bacteria; 1.4 Outline of This Book; Section 1 Focus Chapters; Chapter 2. Recent Advances in Understanding Nitrogenases and How They Work; 2.1 Introduction: Two Types of Nitrogenases Exist; 2.2 Occurrence and Relationships among the Group-1 Nitrogenases; 2.3 Overview of Properties of Mo-Nitrogenase; 2.4 Overview of Properties of V-Nitrogenase and Fe-Nitrogenase
2.5 Structures of the Nitrogenase Component Proteins and their Complexes2.6 Structures of the MoFe-Protein Prosthetic Groups; 2.7 How are Substrates Reduced?; 2.8 Where are the Binding Sites for Substrates and Inhibitors?; 2.9 How are Electrons and Protons Delivered?; 2.10 Some Concluding Remarks; Chapter 3. Evolution and Taxonomy of Nitrogen-Fixing Organisms with Emphasis on Rhizobia; 3.1 Introduction; 3.2 Materials and Methods; 3.3 Results; 3.4 Discussion; 3.4 NOTE; 3.4 Acknowledgments Chapter 4. Evolution of Rhizobium Nodulation: From Nodule-Specific Genes (Nodulins) to Recruitment of Common Processes4.1 Nodule Formation in a Nutshell; 4.2 Signaling in Symbiosis; 4.3 The Indeterminate Nodule; 4.4 Signaling Inside the Nodule; 4.5 Rhizobium Symbiosis in Parasponia; 4.6 Actinorhizal N-Fixing Symbiosis; 4.7 Arbuscular Mycorrhizal Symbiosis; 4.8 Interactions with (Biotrophic) Pathogens; 4.9 The Evolution of the Rhizobium Nodule Symbiosis; Chapter 5. Bioengineering Nitrogen Acquisition in Rice: Promises for Global Food Security; 5.1 Introduction 5.2 Primary Nitrogen Uptake and Nitrogen-Use Efficiency: Gene Candidates and Caveats5.3 The Carbon-Nitrogen Interface and N-Transfer: Removing Enzymatic Bottlenecks; 5.4 Nitrogen Fixation: The Holy Grail; 5.5 Concluding Remarks; Section 2 Chemistry and Biochemistry of Nitrogenases; Chapter 6. An Overview on Fe-S Protein Biogenesis from Prokaryotes to Eukaryotes; 6.1 Introduction; 6.2 Source of Iron and Sulfur; 6.3 Structures and Properties of Fe-S Clusters; 6.4 Formation of Fe-S Clusters; 6.5 Diverse Functions of Fe-S Proteins; 6.6 Fe-S Cluster Biosynthesis in Prokaryotes 6.7 ISC Assembly Machinery6.8 The Suf Machinery in Bacteria and Plastids; 6.9 Fe-S Protein Assembly in Eukaryotes; 6.10 Mitochondrial ISC Assembly Machinery; 6.11 Mitochondrial ISC Export System; 6.12 CIA Assembly Apparatus; 6.13 Conclusion; 6.13 Acknowledgments; Chapter 7. Biosynthesis of the Iron-Molybdenum Cofactor of Nitrogenase; 7.1 Introduction: Dinitrogenase and Apo-Dinitrogenase; 7.2 NifU AND NifS; 7.3 NifB: FROM SIMPLE [Fe-S] CLUSTERS TO THE CORE OF FeMo-co; 7.4 NifQ: DIRECTING Mo TO FeMo-co SYNTHESIS; 7.5 NifV and the Incorporation of Homocitrate into FeMo-co 7.6 NifEN: A NODE IN THE FeMo-co BIOSYNTHETIC PATHWAY |
| Record Nr. | UNINA-9910131431003321 |
| Hoboken, New Jersey : , : Wiley-Blackwell, , 2015 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Biological nitrogen fixation / / edited by Frans J. de Bruijn
| Biological nitrogen fixation / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley-Blackwell, , 2015 |
| Descrizione fisica | 1 online resource (1236 p.) |
| Disciplina | 581.13353 |
| Soggetto topico | Nitrogen - Fixation |
| ISBN |
1-118-63721-6
1-119-05309-9 1-118-63709-7 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Cover; Title Page; Copyright; Dedication; Contents; Preface; Acknowledgments; Contributors; Volume 1; Chapter 1. Introduction; 1.1 Free-Living Diazotrophs; 1.2 Symbiotic Nitrogen-Fixing Bacteria; 1.3 Associative Nitrogen-Fixing Bacteria; 1.4 Outline of This Book; Section 1 Focus Chapters; Chapter 2. Recent Advances in Understanding Nitrogenases and How They Work; 2.1 Introduction: Two Types of Nitrogenases Exist; 2.2 Occurrence and Relationships among the Group-1 Nitrogenases; 2.3 Overview of Properties of Mo-Nitrogenase; 2.4 Overview of Properties of V-Nitrogenase and Fe-Nitrogenase
2.5 Structures of the Nitrogenase Component Proteins and their Complexes2.6 Structures of the MoFe-Protein Prosthetic Groups; 2.7 How are Substrates Reduced?; 2.8 Where are the Binding Sites for Substrates and Inhibitors?; 2.9 How are Electrons and Protons Delivered?; 2.10 Some Concluding Remarks; Chapter 3. Evolution and Taxonomy of Nitrogen-Fixing Organisms with Emphasis on Rhizobia; 3.1 Introduction; 3.2 Materials and Methods; 3.3 Results; 3.4 Discussion; 3.4 NOTE; 3.4 Acknowledgments Chapter 4. Evolution of Rhizobium Nodulation: From Nodule-Specific Genes (Nodulins) to Recruitment of Common Processes4.1 Nodule Formation in a Nutshell; 4.2 Signaling in Symbiosis; 4.3 The Indeterminate Nodule; 4.4 Signaling Inside the Nodule; 4.5 Rhizobium Symbiosis in Parasponia; 4.6 Actinorhizal N-Fixing Symbiosis; 4.7 Arbuscular Mycorrhizal Symbiosis; 4.8 Interactions with (Biotrophic) Pathogens; 4.9 The Evolution of the Rhizobium Nodule Symbiosis; Chapter 5. Bioengineering Nitrogen Acquisition in Rice: Promises for Global Food Security; 5.1 Introduction 5.2 Primary Nitrogen Uptake and Nitrogen-Use Efficiency: Gene Candidates and Caveats5.3 The Carbon-Nitrogen Interface and N-Transfer: Removing Enzymatic Bottlenecks; 5.4 Nitrogen Fixation: The Holy Grail; 5.5 Concluding Remarks; Section 2 Chemistry and Biochemistry of Nitrogenases; Chapter 6. An Overview on Fe-S Protein Biogenesis from Prokaryotes to Eukaryotes; 6.1 Introduction; 6.2 Source of Iron and Sulfur; 6.3 Structures and Properties of Fe-S Clusters; 6.4 Formation of Fe-S Clusters; 6.5 Diverse Functions of Fe-S Proteins; 6.6 Fe-S Cluster Biosynthesis in Prokaryotes 6.7 ISC Assembly Machinery6.8 The Suf Machinery in Bacteria and Plastids; 6.9 Fe-S Protein Assembly in Eukaryotes; 6.10 Mitochondrial ISC Assembly Machinery; 6.11 Mitochondrial ISC Export System; 6.12 CIA Assembly Apparatus; 6.13 Conclusion; 6.13 Acknowledgments; Chapter 7. Biosynthesis of the Iron-Molybdenum Cofactor of Nitrogenase; 7.1 Introduction: Dinitrogenase and Apo-Dinitrogenase; 7.2 NifU AND NifS; 7.3 NifB: FROM SIMPLE [Fe-S] CLUSTERS TO THE CORE OF FeMo-co; 7.4 NifQ: DIRECTING Mo TO FeMo-co SYNTHESIS; 7.5 NifV and the Incorporation of Homocitrate into FeMo-co 7.6 NifEN: A NODE IN THE FeMo-co BIOSYNTHETIC PATHWAY |
| Record Nr. | UNINA-9910830427603321 |
| Hoboken, New Jersey : , : Wiley-Blackwell, , 2015 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Handbook of molecular microbial ecology I : metagenomics and complementary approaches / / edited by Frans J. de Bruijn
| Handbook of molecular microbial ecology I : metagenomics and complementary approaches / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, 2011 |
| Descrizione fisica | 1 online resource (785 p.) |
| Disciplina | 576 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Molecular microbiology
Microbial ecology |
| ISBN |
1-118-01049-3
1-283-17559-2 9786613175595 1-118-01044-2 1-118-01051-5 |
| Classificazione | SCI045000 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | pt. 1. Background chapters -- pt. 2. The species concept -- pt. 3. Metagenomics -- pt. 4. Consortia and databases -- pt. 5. Computer-assisted analysis -- pt. 6. Complementary approaches -- pt. 6a. Microarrays -- pt. 6b. Metatranscriptomics -- pt. 6c. Metaproteomics -- pt. 6d. Metabolomics -- pt. 6e. Single-cell analysis. |
| Record Nr. | UNINA-9910131023503321 |
| Hoboken, N.J., : Wiley-Blackwell, 2011 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Handbook of molecular microbial ecology II [[electronic resource] ] : metagenomics in different habitats / / edited by Frans J. de Bruijn
| Handbook of molecular microbial ecology II [[electronic resource] ] : metagenomics in different habitats / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2011 |
| Descrizione fisica | xx, 609 p. : ill. (some col.), maps (some col.) |
| Disciplina | 572.8/629 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Microbial genomics
Microbiology - Methodology |
| ISBN |
9786613175601
1-118-01052-3 1-118-01054-X 1-283-17560-6 1-118-01053-1 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | pt. 1. Viral genomes -- pt. 2. The soil habitat -- pt. 3. The digestive tract -- pt. 4. Marines and lakes -- pt. 5. Other habitats -- pt. 6. Biodegradation -- pt. 7. Biocatalysts and natural products -- pt. 8. Summary. |
| Record Nr. | UNINA-9910208825503321 |
| Hoboken, N.J., : Wiley-Blackwell, c2011 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Handbook of molecular microbial ecology II : metagenomics in different habitats / / edited by Frans J. de Bruijn
| Handbook of molecular microbial ecology II : metagenomics in different habitats / / edited by Frans J. de Bruijn |
| Edizione | [1st ed.] |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2011 |
| Descrizione fisica | xx, 609 p. : ill. (some col.), maps (some col.) |
| Disciplina | 572.8/629 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Microbial genomics
Microbiology - Methodology |
| ISBN |
9786613175601
1-118-01052-3 1-118-01054-X 1-283-17560-6 1-118-01053-1 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | pt. 1. Viral genomes -- pt. 2. The soil habitat -- pt. 3. The digestive tract -- pt. 4. Marines and lakes -- pt. 5. Other habitats -- pt. 6. Biodegradation -- pt. 7. Biocatalysts and natural products -- pt. 8. Summary. |
| Record Nr. | UNINA-9910810917703321 |
| Hoboken, N.J., : Wiley-Blackwell, c2011 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn
| Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2013 |
| Descrizione fisica | 1 online resource (1312 p.) |
| Disciplina | 577.57 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Soil microbiology
Microbial genetics Microbial ecology Rhizosphere |
| ISBN |
1-118-29767-9
1-118-29766-0 1-299-40217-8 1-118-29773-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | section 1. Focus chapters -- section 2. Plant-mediated structuring of bacterial communities in the rhizosphere -- section 3. Plant genetics and rhizobacterial communities -- section 4. Hormones and other signals and rhizomicrobes -- section 5. Endophytes -- section 6. Symbiotic plant-microbe interactions -- section 7. PGPR, biocontrol, and disease-suppressive bacteria -- section 8. Biofilm formation and attachment to roots -- section 9. Quorum sensing and signaling -- section 10. Genomic sequencing and screening of genes/promoters activated in the natural environment -- section 11. Marker and reporter genes for plant-host interaction studies -- section 12. Phytoremediation and heavy-metal tolerance in the rhizosphere -- section 13. Climate change effects on soil/rhizosphere microbial communities -- section 14. Metagenomics and the soil/rhizosphere -- section 15. Engineering the rhizosphere : the "biased rhizosphere" concept -- section 16. Concluding chapters. |
| Record Nr. | UNINA-9910139037203321 |
| Hoboken, N.J., : Wiley-Blackwell, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn
| Molecular microbial ecology of the rhizosphere [[electronic resource] /] / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2013 |
| Descrizione fisica | 1 online resource (1312 p.) |
| Disciplina | 577.57 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Soil microbiology
Microbial genetics Microbial ecology Rhizosphere |
| ISBN |
1-118-29767-9
1-118-29766-0 1-299-40217-8 1-118-29773-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | section 1. Focus chapters -- section 2. Plant-mediated structuring of bacterial communities in the rhizosphere -- section 3. Plant genetics and rhizobacterial communities -- section 4. Hormones and other signals and rhizomicrobes -- section 5. Endophytes -- section 6. Symbiotic plant-microbe interactions -- section 7. PGPR, biocontrol, and disease-suppressive bacteria -- section 8. Biofilm formation and attachment to roots -- section 9. Quorum sensing and signaling -- section 10. Genomic sequencing and screening of genes/promoters activated in the natural environment -- section 11. Marker and reporter genes for plant-host interaction studies -- section 12. Phytoremediation and heavy-metal tolerance in the rhizosphere -- section 13. Climate change effects on soil/rhizosphere microbial communities -- section 14. Metagenomics and the soil/rhizosphere -- section 15. Engineering the rhizosphere : the "biased rhizosphere" concept -- section 16. Concluding chapters. |
| Record Nr. | UNINA-9910830253503321 |
| Hoboken, N.J., : Wiley-Blackwell, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Molecular microbial ecology of the rhizosphere / / edited by Frans J. de Bruijn
| Molecular microbial ecology of the rhizosphere / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, N.J., : Wiley-Blackwell, c2013 |
| Descrizione fisica | 1 online resource (1312 p.) |
| Disciplina | 577.57 |
| Altri autori (Persone) | BruijnF. J. de (Frans J. de) |
| Soggetto topico |
Soil microbiology
Microbial genetics Microbial ecology Rhizosphere |
| ISBN |
1-118-29767-9
1-118-29766-0 1-299-40217-8 1-118-29773-3 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | section 1. Focus chapters -- section 2. Plant-mediated structuring of bacterial communities in the rhizosphere -- section 3. Plant genetics and rhizobacterial communities -- section 4. Hormones and other signals and rhizomicrobes -- section 5. Endophytes -- section 6. Symbiotic plant-microbe interactions -- section 7. PGPR, biocontrol, and disease-suppressive bacteria -- section 8. Biofilm formation and attachment to roots -- section 9. Quorum sensing and signaling -- section 10. Genomic sequencing and screening of genes/promoters activated in the natural environment -- section 11. Marker and reporter genes for plant-host interaction studies -- section 12. Phytoremediation and heavy-metal tolerance in the rhizosphere -- section 13. Climate change effects on soil/rhizosphere microbial communities -- section 14. Metagenomics and the soil/rhizosphere -- section 15. Engineering the rhizosphere : the "biased rhizosphere" concept -- section 16. Concluding chapters. |
| Record Nr. | UNINA-9910877278903321 |
| Hoboken, N.J., : Wiley-Blackwell, c2013 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Stress and environmental regulation of gene expression and adaptation in bacteria / / edited by Frans J. de Bruijn
| Stress and environmental regulation of gene expression and adaptation in bacteria / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley-Blackwell, , 2016 |
| Descrizione fisica | 1 online resource (1463 p.) |
| Disciplina | 579.3/135 |
| Soggetto topico |
Bacterial genetics
Gene expression Adaptation (Biology) |
| ISBN |
1-119-00482-9
1-119-00481-0 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Stress and environmental regulation of gene expression and adaptation in bacteria; Contents; Preface; Acknowledgements; List of contributors; 1 Introduction; 2 Key overview chapters; 2.1 Stress-induced changes in transcript stability; 2.1.1 Introduction; 2.1.2 RNA chaperones - cold shock proteins; 2.1.3 Stability of the general stress transcripts; 2.1.4 Stress-induced change in transcript stability of heat shock response genes; 2.1.5 Physiological consequences of the decreased stability of heat shock gene transcripts; 2.1.6 The physiological roles of CspC and CspE; 2.1.7 Conclusions
2.1.8 Open questionsReferences; 2.2 StressChip for monitoring microbial stress response in the environment; 2.2.1 Introduction; 2.2.2 Microarrays; 2.2.3 Functional gene microarrays; 2.2.4 The StressChip FGA; 2.2.4.1 Design overview; 2.2.4.2 General microarray qualities; 2.2.4.3 StressChip design; 2.2.4.4 Gene selection; 2.2.4.5 Evaluation of StressChip; 2.2.5 GeoChip data analysis pipeline; 2.2.6 Conclusion and summary; Acknowledgements; References; 2.3 A revolutionary paradigm of bacterial genome regulation; 2.3.1 Introduction 2.3.2 RNA polymerase sigma factors: search for recognition of target promoters2.3.3 Transcription factors (TFs): search invivo for regulation targets using transcriptome and ChIP-chip analyses; 2.3.4 Transcription factors (TFs): search invitro for regulation targets using the Genomic SELEX screening system; 2.3.5 Functional classification of TFs; 2.3.6 Level control of TFs; 2.3.7 Activity control of TFs; 2.3.8 Promoter-specific (PS)-TF screening; 2.3.9 Hierarchical networks of TF-TF interplays; Acknowledgements; References 2.4 Role of changes in 70-driven transcription in adaptation of E.coli to conditions of stress or starvation2.4.1 Introduction; 2.4.2 Sigma factors compete for binding to core RNAP; 2.4.3 Reallocation of RNAP to maintenance-related promoters during stress and starvation; 2.4.4 Rsd: An Anti-70 protein; 2.4.4.1 Rsd promotes transcription by alternative sigma factors; 2.4.4.2 Mechanism of inhibition of 70-driven transcription by Rsd; 2.4.5 6S RNA: a transcription-regulating small RNA; 2.4.5.1 6S RNA and survival of E. coli during the late stationary phase 2.4.5.2 6S RNA inhibits 70-mediated transcription2.4.5.3 6S RNA competes with -35 promoter region for binding to region 4.2 of 70; 2.4.6 (p)ppGpp, DksA and CarD regulate transcription; 2.4.6.1 (p)ppGpp, DksA and CarD interact with RNAP; 2.4.6.2 Complementary and opposing effects of (p)ppGpp and DksA; 2.4.6.3 Presence of (p)ppGpp or DksA favors transcription driven by alternate sigma factors; 2.4.7 Concluding remarks; Acknowledgements; References; 2.5 The distribution and spatial organization of RNA polymerase in Escherichia coli: growth rate regulation and stress responses 2.5.1 Introduction |
| Record Nr. | UNINA-9910135037303321 |
| Hoboken, New Jersey : , : Wiley-Blackwell, , 2016 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Stress and environmental regulation of gene expression and adaptation in bacteria / / edited by Frans J. de Bruijn
| Stress and environmental regulation of gene expression and adaptation in bacteria / / edited by Frans J. de Bruijn |
| Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley-Blackwell, , 2016 |
| Descrizione fisica | 1 online resource (1463 p.) |
| Disciplina | 579.3/135 |
| Soggetto topico |
Bacterial genetics
Gene expression Adaptation (Biology) |
| ISBN |
1-119-00482-9
1-119-00481-0 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Stress and environmental regulation of gene expression and adaptation in bacteria; Contents; Preface; Acknowledgements; List of contributors; 1 Introduction; 2 Key overview chapters; 2.1 Stress-induced changes in transcript stability; 2.1.1 Introduction; 2.1.2 RNA chaperones - cold shock proteins; 2.1.3 Stability of the general stress transcripts; 2.1.4 Stress-induced change in transcript stability of heat shock response genes; 2.1.5 Physiological consequences of the decreased stability of heat shock gene transcripts; 2.1.6 The physiological roles of CspC and CspE; 2.1.7 Conclusions
2.1.8 Open questionsReferences; 2.2 StressChip for monitoring microbial stress response in the environment; 2.2.1 Introduction; 2.2.2 Microarrays; 2.2.3 Functional gene microarrays; 2.2.4 The StressChip FGA; 2.2.4.1 Design overview; 2.2.4.2 General microarray qualities; 2.2.4.3 StressChip design; 2.2.4.4 Gene selection; 2.2.4.5 Evaluation of StressChip; 2.2.5 GeoChip data analysis pipeline; 2.2.6 Conclusion and summary; Acknowledgements; References; 2.3 A revolutionary paradigm of bacterial genome regulation; 2.3.1 Introduction 2.3.2 RNA polymerase sigma factors: search for recognition of target promoters2.3.3 Transcription factors (TFs): search invivo for regulation targets using transcriptome and ChIP-chip analyses; 2.3.4 Transcription factors (TFs): search invitro for regulation targets using the Genomic SELEX screening system; 2.3.5 Functional classification of TFs; 2.3.6 Level control of TFs; 2.3.7 Activity control of TFs; 2.3.8 Promoter-specific (PS)-TF screening; 2.3.9 Hierarchical networks of TF-TF interplays; Acknowledgements; References 2.4 Role of changes in 70-driven transcription in adaptation of E.coli to conditions of stress or starvation2.4.1 Introduction; 2.4.2 Sigma factors compete for binding to core RNAP; 2.4.3 Reallocation of RNAP to maintenance-related promoters during stress and starvation; 2.4.4 Rsd: An Anti-70 protein; 2.4.4.1 Rsd promotes transcription by alternative sigma factors; 2.4.4.2 Mechanism of inhibition of 70-driven transcription by Rsd; 2.4.5 6S RNA: a transcription-regulating small RNA; 2.4.5.1 6S RNA and survival of E. coli during the late stationary phase 2.4.5.2 6S RNA inhibits 70-mediated transcription2.4.5.3 6S RNA competes with -35 promoter region for binding to region 4.2 of 70; 2.4.6 (p)ppGpp, DksA and CarD regulate transcription; 2.4.6.1 (p)ppGpp, DksA and CarD interact with RNAP; 2.4.6.2 Complementary and opposing effects of (p)ppGpp and DksA; 2.4.6.3 Presence of (p)ppGpp or DksA favors transcription driven by alternate sigma factors; 2.4.7 Concluding remarks; Acknowledgements; References; 2.5 The distribution and spatial organization of RNA polymerase in Escherichia coli: growth rate regulation and stress responses 2.5.1 Introduction |
| Record Nr. | UNINA-9910831061903321 |
| Hoboken, New Jersey : , : Wiley-Blackwell, , 2016 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||