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Model, Integrate, Search... Repeat [[electronic resource] ] : A Sound Approach to Building Integrated Repositories of Genomic Data / / by Anna Bernasconi
| Model, Integrate, Search... Repeat [[electronic resource] ] : A Sound Approach to Building Integrated Repositories of Genomic Data / / by Anna Bernasconi |
| Autore | Bernasconi Anna |
| Edizione | [1st ed. 2023.] |
| Pubbl/distr/stampa | Cham : , : Springer Nature Switzerland : , : Imprint : Springer, , 2023 |
| Descrizione fisica | 1 online resource (277 pages) |
| Disciplina | 572.860285 |
| Collana | Lecture Notes in Business Information Processing |
| Soggetto topico |
Application software
Bioinformatics Quantitative research Artificial intelligence - Data processing Computer and Information Systems Applications Data Analysis and Big Data Data Science |
| ISBN | 3-031-44907-X |
| Formato | Materiale a stampa  |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Intro -- Foreword -- Preface -- Acknowledgements -- Contents -- Acronyms -- Introduction -- Genomic Data Integration -- Thesis Contribution within the GeCo Project -- The Recent COVID-19 Pandemic -- Thesis Structure -- Part I Human Genomic Data Integration -- Genomic Data Players and Processes -- Technological Pipeline of Genomic Data -- Production -- Integration -- Services and Access -- Taxonomy of Players Involved in Data Production and Integration -- Main Genomic Data Players -- Contributors -- Repository Hosts -- Consortia -- Integrators -- Modeling Genomic Data -- The Genomic Data Model -- The Genomic Conceptual Model -- Analysis of Metadata Attributes -- Model Design -- Validation: Source-Specific Views of GCM -- Related Works -- Integrating Genomic Data -- Theoretical Rationale -- Approach Overview -- Data Download -- Data Transformation -- Data Cleaning -- Data Mapping -- Data Normalization and Enrichment -- Search Service and Ontology Selection -- Enrichment Process -- Data Constraint Checking -- Architecture Implementation -- Data Persistence -- Architecture Validation -- Lossless Integration -- Semantic Enrichment -- User Evaluation -- Related Works -- Snapshot of the Data Repository -- Included Data Sources -- OpenGDC: Integrating Cancer Genomic Data and Metadata -- Towards Automated Integration of Unstructured Metadata -- Experiments -- Related Works -- Searching Genomic Data -- Issues in Exploiting Semantic Knowledge in Genomics -- Inference Explanation -- GeKnowGraph: Exploration-Based Interface -- Exploration Interaction -- GenoSurf: a Web-Based Search Server for Genomic Datasets -- Data Search -- Key-Value Search -- Query Sessions -- Result Visualization -- Additional Functionalities -- Use Cases -- Validation of GenoSurf -- Related Works -- Future Directions of the Data Repository -- Including New Data Sources.
Improving Genomic Data Quality Dimensions -- Towards Better Interoperability -- Simplifying Data and Tools for End Users -- Monitoring Integration and Search Value -- Part II Viral Sequence Data Integration -- Viral Sequences Data Management Resources -- Landscape of Data Resources for Viral Sequences -- Fully Open-Source Resources -- GISAID and its Resources -- Integration of Sources of Viral Sequences -- Metadata Integration -- Value Harmonization and Ontological Efforts -- Replicated Sequences in Multiple Sources -- SARS-CoV-2 Search Systems -- Portals to NCBI and GISAID Resources -- Integrative Search Systems -- Comparison -- Discussion -- GISAID Restrictions -- Metadata Quality -- (Un)Willingness to Share Sequence Data -- Modeling Viral Sequence Data -- Conceptual Modeling for Viral Genomics -- Answering Complex Biological Queries -- Related Works -- Integrating Viral Sequence Data -- Database Content -- Relational Schema -- Data Import -- Annotation and Variant Calling -- Data Curation -- Searching Viral Sequence Data -- Requirements Analysis -- Lessons Learnt -- Web Interface -- Example Queries -- Discussion -- Related Works -- Future Directions of the Viral Sequence Repository -- Research Agenda -- ViruSurf Extensions -- Visualization Support: VirusViz -- Active Monitoring of SARS-CoV-2 Variations -- Integrating Host-Pathogen Information -- The Virus Genotype - Host Phenotype Connection -- The Host Genotype - Host Phenotype Connection -- Part III Epilogue -- Conclusions and Vision -- Summary of Thesis Contributions -- Achievements within GeCo Project -- Outlook -- META-BASE tool configuration -- User Manual -- Process Configuration -- Mapper Configuration -- Experimental setup GEO metadata extraction -- Mappings of viral sources attributes into ViruSurf -- References. |
| Record Nr. | UNISA-996574259503316 |
Bernasconi Anna
|
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| Cham : , : Springer Nature Switzerland : , : Imprint : Springer, , 2023 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. di Salerno | ||
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Model, Integrate, Search... Repeat : A Sound Approach to Building Integrated Repositories of Genomic Data / / by Anna Bernasconi
| Model, Integrate, Search... Repeat : A Sound Approach to Building Integrated Repositories of Genomic Data / / by Anna Bernasconi |
| Autore | Bernasconi Anna |
| Edizione | [1st ed. 2023.] |
| Pubbl/distr/stampa | Cham : , : Springer Nature Switzerland : , : Imprint : Springer, , 2023 |
| Descrizione fisica | 1 online resource (277 pages) |
| Disciplina | 572.860285 |
| Collana | Lecture Notes in Business Information Processing |
| Soggetto topico |
Application software
Bioinformatics Quantitative research Artificial intelligence - Data processing Computer and Information Systems Applications Data Analysis and Big Data Data Science |
| ISBN | 3-031-44907-X |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto |
Intro -- Foreword -- Preface -- Acknowledgements -- Contents -- Acronyms -- Introduction -- Genomic Data Integration -- Thesis Contribution within the GeCo Project -- The Recent COVID-19 Pandemic -- Thesis Structure -- Part I Human Genomic Data Integration -- Genomic Data Players and Processes -- Technological Pipeline of Genomic Data -- Production -- Integration -- Services and Access -- Taxonomy of Players Involved in Data Production and Integration -- Main Genomic Data Players -- Contributors -- Repository Hosts -- Consortia -- Integrators -- Modeling Genomic Data -- The Genomic Data Model -- The Genomic Conceptual Model -- Analysis of Metadata Attributes -- Model Design -- Validation: Source-Specific Views of GCM -- Related Works -- Integrating Genomic Data -- Theoretical Rationale -- Approach Overview -- Data Download -- Data Transformation -- Data Cleaning -- Data Mapping -- Data Normalization and Enrichment -- Search Service and Ontology Selection -- Enrichment Process -- Data Constraint Checking -- Architecture Implementation -- Data Persistence -- Architecture Validation -- Lossless Integration -- Semantic Enrichment -- User Evaluation -- Related Works -- Snapshot of the Data Repository -- Included Data Sources -- OpenGDC: Integrating Cancer Genomic Data and Metadata -- Towards Automated Integration of Unstructured Metadata -- Experiments -- Related Works -- Searching Genomic Data -- Issues in Exploiting Semantic Knowledge in Genomics -- Inference Explanation -- GeKnowGraph: Exploration-Based Interface -- Exploration Interaction -- GenoSurf: a Web-Based Search Server for Genomic Datasets -- Data Search -- Key-Value Search -- Query Sessions -- Result Visualization -- Additional Functionalities -- Use Cases -- Validation of GenoSurf -- Related Works -- Future Directions of the Data Repository -- Including New Data Sources.
Improving Genomic Data Quality Dimensions -- Towards Better Interoperability -- Simplifying Data and Tools for End Users -- Monitoring Integration and Search Value -- Part II Viral Sequence Data Integration -- Viral Sequences Data Management Resources -- Landscape of Data Resources for Viral Sequences -- Fully Open-Source Resources -- GISAID and its Resources -- Integration of Sources of Viral Sequences -- Metadata Integration -- Value Harmonization and Ontological Efforts -- Replicated Sequences in Multiple Sources -- SARS-CoV-2 Search Systems -- Portals to NCBI and GISAID Resources -- Integrative Search Systems -- Comparison -- Discussion -- GISAID Restrictions -- Metadata Quality -- (Un)Willingness to Share Sequence Data -- Modeling Viral Sequence Data -- Conceptual Modeling for Viral Genomics -- Answering Complex Biological Queries -- Related Works -- Integrating Viral Sequence Data -- Database Content -- Relational Schema -- Data Import -- Annotation and Variant Calling -- Data Curation -- Searching Viral Sequence Data -- Requirements Analysis -- Lessons Learnt -- Web Interface -- Example Queries -- Discussion -- Related Works -- Future Directions of the Viral Sequence Repository -- Research Agenda -- ViruSurf Extensions -- Visualization Support: VirusViz -- Active Monitoring of SARS-CoV-2 Variations -- Integrating Host-Pathogen Information -- The Virus Genotype - Host Phenotype Connection -- The Host Genotype - Host Phenotype Connection -- Part III Epilogue -- Conclusions and Vision -- Summary of Thesis Contributions -- Achievements within GeCo Project -- Outlook -- META-BASE tool configuration -- User Manual -- Process Configuration -- Mapper Configuration -- Experimental setup GEO metadata extraction -- Mappings of viral sources attributes into ViruSurf -- References. |
| Record Nr. | UNINA-9910770265603321 |
|
Bernasconi Anna
|
||
| Cham : , : Springer Nature Switzerland : , : Imprint : Springer, , 2023 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||
Research Challenges in Information Science. RCIS 2026 Forum and Doctoral Consortium : Toulouse, France, May 26–29, 2026, Revised Selected Papers / / edited by Anna Bernasconi, Mario Cortès-Cornax, Jose Luis de la Vara, Elsa Negre, Thomas Polacsek, Jolita Ralyté, Marcela Ruiz
| Research Challenges in Information Science. RCIS 2026 Forum and Doctoral Consortium : Toulouse, France, May 26–29, 2026, Revised Selected Papers / / edited by Anna Bernasconi, Mario Cortès-Cornax, Jose Luis de la Vara, Elsa Negre, Thomas Polacsek, Jolita Ralyté, Marcela Ruiz |
| Autore | Bernasconi Anna |
| Edizione | [1st ed. 2027.] |
| Pubbl/distr/stampa | Cham : , : Springer Nature Switzerland : , : Imprint : Springer, , 2027 |
| Descrizione fisica | 1 online resource (418 pages) |
| Disciplina | 005.3 |
| Collana | Lecture Notes in Business Information Processing |
| Soggetto topico |
Information technology - Management
Software engineering Machine learning Data protection Computer Application in Administrative Data Processing Business Process Management Software Engineering Machine Learning Data and Information Security |
| ISBN | 9783032350435 |
| Formato | Materiale a stampa |
| Livello bibliografico | Monografia |
| Lingua di pubblicazione | eng |
| Nota di contenuto | -- Forum. -- Data Chameleon: Biological-Inspired Contextual Privacy for Automated Compliance Evaluation in Trustworthy Data Sharing. -- Towards an IoT Plan for Smart Buildings: Lessons from a Real-World Construction Project. -- When Fake News Sounds Right: Assessing Message Credibility in AI-Generated Misinformation. -- From Data Governance Policies to Policy-as-Code: An LLM-based Framework. -- MAPS-AI a Model-Driven AI-Assisted Tool for IT Project Plan and Scope: Case Study and Evaluation. -- Low-Code Platforms Adoption : A Motivational Adoption Process Perspective. -- Quantifying ICT Third-party Concentration Risk Using DORA Reporting Data. -- Probabilistic Dempster–Shafer Fusion for Multimodal Breast Cancer Analysis. -- Adoption of AI-Based Recruitment Systems: Benefits, Challenges, and User Trust. -- Querying Structured Data Through Natural Language Using Language Models. -- Towards a Meta-Model for Complex Performance Indicators: a Systematic Literature Review and an Illustration in the Cardiology Domain. -- Mapping Capabilities with LLMs: Requirements and Feasibility Assessment of Capability Broker. -- Insights from Triage Processes for Fairness-Aware Process Redesign. -- Can we typify health information seekers? Identification of personas among laypeople. -- Doctoral Consortium. -- Toward Hybrid Agile Teams: Enhancing collaboration in agile projects by exploring traditional and AI-based tools for process optimization and best practices. -- Towards a conceptual model for evaluating prospective scenarios - A case study in future air transport. -- A Bounded-Autonomy Multi-Agent Architecture for Policy-Constrained Data Governance. -- Assessing Occupational Physical Workload Using IoT and Human Activity Recognition. -- Cyber Resilience by Design for Critical-Infrastructure Information Systems: A Three-Phase Framework for Systemic Risk Assessment, Management, and Recovery. -- DIAPROD: A Framework for Formal Consent Modelling, Dynamic Storage Limitation, Data Minimisation, and LLM-Assisted Compliance for Data Protection by Design. -- Combining large language models with named entity recognition to automate market research interview transcription and customer journey mapping – empirical feedback by business professionals. -- Towards a Knowledge Graph-based and LLM-assisted Support System for University Curriculum Engineering. |
| Record Nr. | UNINA-9911127951403321 |
|
Bernasconi Anna
|
||
| Cham : , : Springer Nature Switzerland : , : Imprint : Springer, , 2027 | ||
| Materiale a stampa | ||
| Lo trovi qui: Univ. Federico II | ||
| ||