Genomic Perl : from bioinformatics basics to working code / / Rex A. Dwyer [[electronic resource]] |
Autore | Dwyer Rex A. |
Pubbl/distr/stampa | Cambridge : , : Cambridge University Press, , 2003 |
Descrizione fisica | 1 online resource (xvii, 334 pages) : digital, PDF file(s) |
Disciplina | 572.80285 |
Soggetto topico |
Perl (Computer program language)
Molecular biology - Data processing Bioinformatics |
ISBN |
1-107-13046-8
1-280-41821-4 9786610418213 1-139-16476-7 1-139-14710-2 0-511-18056-X 0-511-05706-7 0-511-30755-1 0-511-07185-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Cover; Half-title; Title; Copyright; Dedication; Contents; Preface; Acknowledgments; CHAPTER ONE The Central Dogma; CHAPTER TWO RNA Secondary Structure; CHAPTER THREE Comparing DNA Sequences; CHAPTER FOUR Predicting Species: Statistical Models; CHAPTER FIVE Substitution Matrices for Amino Acids; CHAPTER SIX Sequence Databases; CHAPTER SEVEN Local Alignment and the BLAST Heuristic; CHAPTER EIGHT Statistics of BLAST Database Searches; CHAPTER NINE Multiple Sequence Alignment I; CHAPTER TEN Multiple Sequence Alignment II; CHAPTER ELEVEN Phylogeny Reconstruction
CHAPTER TWELVE Protein Motifs and PROSITECHAPTER THIRTEEN Fragment Assembly; CHAPTER FOURTEEN Coding Sequence Prediction with Dicodons; CHAPTER FIFTEEN Satellite Identification; CHAPTER SIXTEEN Restriction Mapping; CHAPTER SEVENTEEN Rearranging Genomes: Gates and Hurdles; APPENDIX A Drawing RNA Cloverleaves; APPENDIX B Space-Saving Strategies for Alignment; APPENDIX C A Data Structure for Disjoint Sets; APPENDIX D Suggestions for Further Reading; Bibliography; Index |
Record Nr. | UNINA-9910450542003321 |
Dwyer Rex A.
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Cambridge : , : Cambridge University Press, , 2003 | ||
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Lo trovi qui: Univ. Federico II | ||
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Genomic Perl : from bioinformatics basics to working code / / Rex A. Dwyer [[electronic resource]] |
Autore | Dwyer Rex A. |
Pubbl/distr/stampa | Cambridge : , : Cambridge University Press, , 2003 |
Descrizione fisica | 1 online resource (xvii, 334 pages) : digital, PDF file(s) |
Disciplina | 572.80285 |
Soggetto topico |
Perl (Computer program language)
Molecular biology - Data processing Bioinformatics |
ISBN |
1-107-13046-8
1-280-41821-4 9786610418213 1-139-16476-7 1-139-14710-2 0-511-18056-X 0-511-05706-7 0-511-30755-1 0-511-07185-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Cover; Half-title; Title; Copyright; Dedication; Contents; Preface; Acknowledgments; CHAPTER ONE The Central Dogma; CHAPTER TWO RNA Secondary Structure; CHAPTER THREE Comparing DNA Sequences; CHAPTER FOUR Predicting Species: Statistical Models; CHAPTER FIVE Substitution Matrices for Amino Acids; CHAPTER SIX Sequence Databases; CHAPTER SEVEN Local Alignment and the BLAST Heuristic; CHAPTER EIGHT Statistics of BLAST Database Searches; CHAPTER NINE Multiple Sequence Alignment I; CHAPTER TEN Multiple Sequence Alignment II; CHAPTER ELEVEN Phylogeny Reconstruction
CHAPTER TWELVE Protein Motifs and PROSITECHAPTER THIRTEEN Fragment Assembly; CHAPTER FOURTEEN Coding Sequence Prediction with Dicodons; CHAPTER FIFTEEN Satellite Identification; CHAPTER SIXTEEN Restriction Mapping; CHAPTER SEVENTEEN Rearranging Genomes: Gates and Hurdles; APPENDIX A Drawing RNA Cloverleaves; APPENDIX B Space-Saving Strategies for Alignment; APPENDIX C A Data Structure for Disjoint Sets; APPENDIX D Suggestions for Further Reading; Bibliography; Index |
Record Nr. | UNINA-9910783143403321 |
Dwyer Rex A.
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Cambridge : , : Cambridge University Press, , 2003 | ||
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Lo trovi qui: Univ. Federico II | ||
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Genomic Perl : from bioinformatics basics to working code / / Rex A. Dwyer [[electronic resource]] |
Autore | Dwyer Rex A. |
Pubbl/distr/stampa | Cambridge : , : Cambridge University Press, , 2003 |
Descrizione fisica | 1 online resource (xvii, 334 pages) : digital, PDF file(s) |
Disciplina | 572.80285 |
Soggetto topico |
Perl (Computer program language)
Molecular biology - Data processing Bioinformatics |
ISBN |
1-107-13046-8
1-280-41821-4 9786610418213 1-139-16476-7 1-139-14710-2 0-511-18056-X 0-511-05706-7 0-511-30755-1 0-511-07185-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Cover; Half-title; Title; Copyright; Dedication; Contents; Preface; Acknowledgments; CHAPTER ONE The Central Dogma; CHAPTER TWO RNA Secondary Structure; CHAPTER THREE Comparing DNA Sequences; CHAPTER FOUR Predicting Species: Statistical Models; CHAPTER FIVE Substitution Matrices for Amino Acids; CHAPTER SIX Sequence Databases; CHAPTER SEVEN Local Alignment and the BLAST Heuristic; CHAPTER EIGHT Statistics of BLAST Database Searches; CHAPTER NINE Multiple Sequence Alignment I; CHAPTER TEN Multiple Sequence Alignment II; CHAPTER ELEVEN Phylogeny Reconstruction
CHAPTER TWELVE Protein Motifs and PROSITECHAPTER THIRTEEN Fragment Assembly; CHAPTER FOURTEEN Coding Sequence Prediction with Dicodons; CHAPTER FIFTEEN Satellite Identification; CHAPTER SIXTEEN Restriction Mapping; CHAPTER SEVENTEEN Rearranging Genomes: Gates and Hurdles; APPENDIX A Drawing RNA Cloverleaves; APPENDIX B Space-Saving Strategies for Alignment; APPENDIX C A Data Structure for Disjoint Sets; APPENDIX D Suggestions for Further Reading; Bibliography; Index |
Record Nr. | UNINA-9910810983503321 |
Dwyer Rex A.
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Cambridge : , : Cambridge University Press, , 2003 | ||
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Lo trovi qui: Univ. Federico II | ||
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Modeling and analysis of bio-molecular networks / / Jinhu LuÌ, Pei Wang |
Autore | LuÌ Jinhu |
Edizione | [1st ed. 2020.] |
Pubbl/distr/stampa | Singapore : , : Springer, , [2020] |
Descrizione fisica | 1 online resource (XXI, 464 p. 144 illus., 123 illus. in color.) |
Disciplina | 572.8 |
Soggetto topico |
Molecular biology - Data processing
Computational biology Bioinformatics |
ISBN | 981-15-9144-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | 1 Introduction and Preliminaries -- 2 Reconstruction of Bio-molecular Networks -- 3 Modeling and Analysis of Simple Genetic Circuits -- 4 Modeling and Analysis of Coupled Bio-molecular Circuits -- 5 Modeling and Analysis of Large-scale Networks -- 6 Evolutionary Mechanisms of Network Motifs in PPI Networks -- 7 Identifying Important Nodes in Bio-molecular Networks -- 8 Statistical Analysis of Functional Genes in Human PPI Networks -- 9 Data-driven Statistical Approaches for Omics Data Analysis. |
Record Nr. | UNINA-9910447244003321 |
LuÌ Jinhu
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Singapore : , : Springer, , [2020] | ||
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Lo trovi qui: Univ. Federico II | ||
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Modeling and analysis of bio-molecular networks / / Jinhu LuÌ, Pei Wang |
Autore | LuÌ Jinhu |
Edizione | [1st ed. 2020.] |
Pubbl/distr/stampa | Singapore : , : Springer, , [2020] |
Descrizione fisica | 1 online resource (XXI, 464 p. 144 illus., 123 illus. in color.) |
Disciplina | 572.8 |
Soggetto topico |
Molecular biology - Data processing
Computational biology Bioinformatics |
ISBN | 981-15-9144-X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto | 1 Introduction and Preliminaries -- 2 Reconstruction of Bio-molecular Networks -- 3 Modeling and Analysis of Simple Genetic Circuits -- 4 Modeling and Analysis of Coupled Bio-molecular Circuits -- 5 Modeling and Analysis of Large-scale Networks -- 6 Evolutionary Mechanisms of Network Motifs in PPI Networks -- 7 Identifying Important Nodes in Bio-molecular Networks -- 8 Statistical Analysis of Functional Genes in Human PPI Networks -- 9 Data-driven Statistical Approaches for Omics Data Analysis. |
Record Nr. | UNISA-996465443403316 |
LuÌ Jinhu
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Singapore : , : Springer, , [2020] | ||
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Lo trovi qui: Univ. di Salerno | ||
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Modeling dynamic phenomena in molecular and cellular biology / Lee A. Segel |
Autore | Segel, Lee A. |
Edizione | [1. ed.] |
Pubbl/distr/stampa | Cambridge : Cambridge University Press, c1984 |
Descrizione fisica | xx, 300 p. : ill. ; 24 cm |
Disciplina | 571.6 |
Soggetto topico |
Cytology - Data processing
Cytology - Mathematical models Mathematics Models, Biological Models, Structural Molecular biology Molecular biology - Data processing Molecular biology - Mathematical models |
ISBN | 052127477X |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Record Nr. | UNISALENTO-991003519239707536 |
Segel, Lee A.
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Cambridge : Cambridge University Press, c1984 | ||
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Lo trovi qui: Univ. del Salento | ||
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Molecular data analysis using R / / Csaba Ortutay, Zsuzsanna Ortutay |
Autore | Ortutay Csaba |
Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley-Blackwell, , 2017 |
Descrizione fisica | 1 online resource (408 pages) |
Disciplina | 572.8 |
Soggetto topico |
Molecular biology - Data processing
Quantitative research R (Computer program language) |
ISBN |
1-119-16504-0
1-119-16503-2 1-119-16505-9 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Record Nr. | UNINA-9910157507303321 |
Ortutay Csaba
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Hoboken, New Jersey : , : Wiley-Blackwell, , 2017 | ||
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Lo trovi qui: Univ. Federico II | ||
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Molecular data analysis using R / / Csaba Ortutay, Zsuzsanna Ortutay |
Autore | Ortutay Csaba |
Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley-Blackwell, , 2017 |
Descrizione fisica | 1 online resource (408 pages) |
Disciplina | 572.8 |
Soggetto topico |
Molecular biology - Data processing
Quantitative research R (Computer program language) |
ISBN |
1-119-16504-0
1-119-16503-2 1-119-16505-9 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Record Nr. | UNINA-9910811581103321 |
Ortutay Csaba
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Hoboken, New Jersey : , : Wiley-Blackwell, , 2017 | ||
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Lo trovi qui: Univ. Federico II | ||
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Pattern recognition in computational molecular biology : techniques and approaches / / edited by Mourad Elloumi [and three others] ; contributors, Andrej Aderhold [and eighty others] |
Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley, , 2016 |
Descrizione fisica | 1 online resource (720 p.) |
Disciplina | 572.8 |
Collana | Wiley Series in Bioinformatics: Computational Techniques and Engineering |
Soggetto topico |
Molecular biology - Data processing
Computational biology Pattern recognition systems |
ISBN |
1-119-07886-5
1-119-07885-7 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Wiley Series; Title Page; Copyright; Table of Contents; List of Contributors; Preface; Part 1: Pattern Recognition in Sequences; Chapter 1: Combinatorial Haplotyping Problems; 1.1 Introduction; 1.2 Single Individual Haplotyping; 1.3 Population Haplotyping; References; Chapter 2: Algorithmic Perspectives of the String Barcoding Problems; 2.1 Introduction; 2.2 Summary of Algorithmic Complexity Results for Barcoding Problems; 2.3 Entropy-Based Information Content Technique for Designing Approximation Algorithms for String Barcoding Problems
2.4 Techniques for Proving Inapproximability Results for String Barcoding Problems2.5 Heuristic Algorithms for String Barcoding Problems; 2.6 Conclusion; Acknowledgments; References; Chapter 3: Alignment-Free Measures for Whole-Genome Comparison; 3.1 Introduction; 3.2 Whole-Genome Sequence Analysis; 3.3 Underlying Approach; 3.4 Experimental Results; 3.5 Conclusion; Author's Contributions; 3.6 Acknowledgments; References; Chapter 4: A Maximum Likelihood Framework for Multiple Sequence Local Alignment; 4.1 Introduction; 4.2 Multiple Sequence Local Alignment; 4.3 Motif Finding Algorithms 4.4 Time Complexity4.5 Case Studies; 4.6 Conclusion; References; Chapter 5: Global Sequence Alignment with a Bounded Number of Gaps; 5.1 Introduction; 5.2 Definitions and Notation; 5.3 Problem Definition; 5.4 Algorithms; 5.5 Conclusion; References; Part 2: Pattern Recognition in Secondary Structures; Chapter 6: A Short Review on Protein Secondary Structure Prediction Methods; 6.1 Introduction; 6.2 Representative Protein Secondary Structure Prediction Methods; 6.3 Evaluation of Protein Secondary Structure Prediction Methods; 6.4 Conclusion; Acknowledgments; References Chapter 7: A Generic Approach to Biological Sequence Segmentation Problems: Application to Protein Secondary Structure Prediction7.1 Introduction; 7.2 Biological Sequence Segmentation; 7.3 MSVMpred; 7.4 Postprocessing with A Generative Model; 7.5 Dedication to Protein Secondary Structure Prediction; 7.6 Conclusions and Ongoing Research; Acknowledgments; References; Chapter 8: Structural Motif Identification and Retrieval: A Geometrical Approach; 8.1 Introduction; 8.2 A Few Basic Concepts; 8.3 State of The Art; 8.4 A Novel Geometrical Approach to Motif Retrieval; 8.5 Implementation Notes 8.6 Conclusions and Future WorkAcknowledgment; References; Chapter 9: Genome-Wide Search for Pseudoknotted Noncoding RNA: A Comparative Study; 9.1 Introduction; 9.2 Background; 9.3 Methodology; 9.4 Results and Interpretation; 9.5 Conclusion; References; Part 3: Pattern Recognition in Tertiary Structures; Chapter 10: Motif Discovery in Protein 3D-Structures using Graph Mining Techniques; 10.1 Introduction; 10.2 From Protein 3D-Structures to Protein Graphs; 10.3 Graph Mining; 10.4 Subgraph Mining; 10.5 Frequent Subgraph Discovery; 10.6 Feature Selection; 10.7 Feature Selection for Subgraphs 10.8 Discussion |
Record Nr. | UNINA-9910137171903321 |
Hoboken, New Jersey : , : Wiley, , 2016 | ||
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Lo trovi qui: Univ. Federico II | ||
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Pattern recognition in computational molecular biology : techniques and approaches / / edited by Mourad Elloumi [and three others] ; contributors, Andrej Aderhold [and eighty others] |
Pubbl/distr/stampa | Hoboken, New Jersey : , : Wiley, , 2016 |
Descrizione fisica | 1 online resource (720 p.) |
Disciplina | 572.8 |
Collana | Wiley Series in Bioinformatics: Computational Techniques and Engineering |
Soggetto topico |
Molecular biology - Data processing
Computational biology Pattern recognition systems |
ISBN |
1-119-07886-5
1-119-07885-7 |
Formato | Materiale a stampa ![]() |
Livello bibliografico | Monografia |
Lingua di pubblicazione | eng |
Nota di contenuto |
Wiley Series; Title Page; Copyright; Table of Contents; List of Contributors; Preface; Part 1: Pattern Recognition in Sequences; Chapter 1: Combinatorial Haplotyping Problems; 1.1 Introduction; 1.2 Single Individual Haplotyping; 1.3 Population Haplotyping; References; Chapter 2: Algorithmic Perspectives of the String Barcoding Problems; 2.1 Introduction; 2.2 Summary of Algorithmic Complexity Results for Barcoding Problems; 2.3 Entropy-Based Information Content Technique for Designing Approximation Algorithms for String Barcoding Problems
2.4 Techniques for Proving Inapproximability Results for String Barcoding Problems2.5 Heuristic Algorithms for String Barcoding Problems; 2.6 Conclusion; Acknowledgments; References; Chapter 3: Alignment-Free Measures for Whole-Genome Comparison; 3.1 Introduction; 3.2 Whole-Genome Sequence Analysis; 3.3 Underlying Approach; 3.4 Experimental Results; 3.5 Conclusion; Author's Contributions; 3.6 Acknowledgments; References; Chapter 4: A Maximum Likelihood Framework for Multiple Sequence Local Alignment; 4.1 Introduction; 4.2 Multiple Sequence Local Alignment; 4.3 Motif Finding Algorithms 4.4 Time Complexity4.5 Case Studies; 4.6 Conclusion; References; Chapter 5: Global Sequence Alignment with a Bounded Number of Gaps; 5.1 Introduction; 5.2 Definitions and Notation; 5.3 Problem Definition; 5.4 Algorithms; 5.5 Conclusion; References; Part 2: Pattern Recognition in Secondary Structures; Chapter 6: A Short Review on Protein Secondary Structure Prediction Methods; 6.1 Introduction; 6.2 Representative Protein Secondary Structure Prediction Methods; 6.3 Evaluation of Protein Secondary Structure Prediction Methods; 6.4 Conclusion; Acknowledgments; References Chapter 7: A Generic Approach to Biological Sequence Segmentation Problems: Application to Protein Secondary Structure Prediction7.1 Introduction; 7.2 Biological Sequence Segmentation; 7.3 MSVMpred; 7.4 Postprocessing with A Generative Model; 7.5 Dedication to Protein Secondary Structure Prediction; 7.6 Conclusions and Ongoing Research; Acknowledgments; References; Chapter 8: Structural Motif Identification and Retrieval: A Geometrical Approach; 8.1 Introduction; 8.2 A Few Basic Concepts; 8.3 State of The Art; 8.4 A Novel Geometrical Approach to Motif Retrieval; 8.5 Implementation Notes 8.6 Conclusions and Future WorkAcknowledgment; References; Chapter 9: Genome-Wide Search for Pseudoknotted Noncoding RNA: A Comparative Study; 9.1 Introduction; 9.2 Background; 9.3 Methodology; 9.4 Results and Interpretation; 9.5 Conclusion; References; Part 3: Pattern Recognition in Tertiary Structures; Chapter 10: Motif Discovery in Protein 3D-Structures using Graph Mining Techniques; 10.1 Introduction; 10.2 From Protein 3D-Structures to Protein Graphs; 10.3 Graph Mining; 10.4 Subgraph Mining; 10.5 Frequent Subgraph Discovery; 10.6 Feature Selection; 10.7 Feature Selection for Subgraphs 10.8 Discussion |
Record Nr. | UNINA-9910819436003321 |
Hoboken, New Jersey : , : Wiley, , 2016 | ||
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Lo trovi qui: Univ. Federico II | ||
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