Next generation sequencing and whole genome selection in aquaculture [[electronic resource] /] / edited by Zhanjiang (John) Liu

• Pubblicazione: Ames, Iowa, : Wiley-Blackwell, 2011
• Descrizione fisica: 1 online resource (484 p.)
• Disciplina: 639.8
• Soggetto topico: Gene mapping; Fishes - Breeding; Shellfish - Breeding
• Altri autori: LiuZhanjiang
• Note generali: Description based upon print version of record.
• Nota di bibliografia: Includes bibliographical references and index.
• Nota di contenuto: Cover; Half title page; Title page; Copyright page; Preface; List of Contributors; Genetic Variations at the Genomic Level; A Review of DNA Marker Technologies; Trend of DNA Marker Technologies; Assessment of the Usefulness of Various Markers for Genome-based Selection; Acknowledgments; Chapter 1 Genomic Variations and Marker Technologies for Genome-based Selection; Characteristics of CNVs; Impact of CNVs on Gene Expression and Phenotypes; Methods for CNV Detection and Analysis; Genome-wide Association Studies Using CNV; Chapter 2 Copy Number Variations; Introduction ; Next Generation Sequencing: The Current PlatformsApplication of Next Generation Sequencing Technologies; Next-Next Generation Sequencing; Perspectives; Chapter 3 Next Generation DNA Sequencing Technologies and Applications; Sample Preparation for Illumina Sequencing; Indexed Libraries for Sequencing Multiple Samples in a Single Lane; Sample Preparation for 454 Sequencing; Sample Preparation for Sequencing Multiplexed Samples Using SOLiD Sequencing; Acknowledgments; Chapter 4 Library Construction for Next Generation Sequencing; Introduction ; An Example of SNP Discovery via Pyrosequencing of RRLsConclusions; Acknowledgments; Chapter 5 SNP Discovery through De Novo Deep Sequencing Using the Next Generation of DNA Sequencers; Advantages and Disadvantages of SNP Discovery through EST Data Mining; SNP Discovery Using ESTs Generated by Sanger Sequencing; SNP Discovery Using Transcript Sequences Generated by Next Generation Sequencing; Windows-Based Platforms for EST Assembly and SNP Identification; Summary; Chapter 6 SNP Discovery through EST Data Mining; Quality Assessment Parameters for EST-derived SNPs ; Assessment of SNP Distribution in the GenomeQuality Issues of SNPs Generated from Sequencing RRLs; Conclusions; Chapter 7 SNP Quality Assessment; SNP Genotyping Platforms: Chemistries and Detection Methods; SNP Genotyping Platforms: Throughput and Multiplexing; SNP Genotyping Platforms: Cost and Flexibility; SNP Genotyping Platforms: Matching Platforms with Project Goals; Conclusions; Chapter 8 SNP Genotyping Platforms; Applications of SNP Markers; Genome Duplication in Fish; Identifying and Genotyping SNPs in Duplicated Fish Genomes; Concluding Remarks; Acknowledgment ; Chapter 9 SNP Analysis with Duplicated Fish Genomes: Differentiation of SNPs, Paralogous Sequence Variants, and Multisite VariantsThe Steps for Genomic Selection; Traits; Breeding Value Estimation for Genomic Selection; Within-Family Genomic Selection; Effect on Genetic Gain; Accuracy of GWEBV; Quality of SNP Chip; Design of Genomic Selection Schemes for Aquaculture; Chapter 10 Genomic Selection for Aquaculture: Principles and Procedures; Introduction; Genomic Selection: Definition and Theory; Future Directions; Summary ; Chapter 11 Genomic Selection in Aquaculture: Methods and Practical Considerations
• Sommario/riassunto: Recent developments in DNA marker technologies, in particular the emergence of Single Nucleotide Polymorphism (SNP) discovery, have rendered some of the traditional methods of genetic research outdated. Next Generation Sequencing and Whole Genome Selection in Aquaculture comprehensively covers the current state of research in whole genome selection and applies these discoveries to the aquaculture industry specifically. The text begins with a thorough review of SNP and transitions into topics such as next generation sequencing, EST data mining, SNP quality assessment, and whole genome se
• Titolo autorizzato: Next generation sequencing and whole genome selection in aquaculture
• ISBN: 0-470-95892-8; 0-470-95885-5; 0-470-95896-0
• Formato: Materiale a stampa
• Livello bibliografico: Monografia
• Lingua di pubblicazione: Inglese
• Record Nr.: 9910830902803321
• Lo trovi qui: Univ. Federico II