Coral reef conservation and restoration in the omics age / / Madeleine J. H. van Oppen and Manuel Aranda Lastra, editors

• Pubblicazione: Cham, Switzerland : , : Springer Nature Switzerland AG, , [2022]; ©2022
• Descrizione fisica: 1 online resource (246 pages)
• Disciplina: 333.9516
• Soggetto topico: Coral reef conservation; Coral reef restoration
• Persona (resp. second.): Van OppenMadeleine J. H.; LastraManuel Aranda
• Nota di bibliografia: Includes bibliographical references.
• Nota di contenuto: Intro -- Acknowledgements -- Contents -- 1: Introduction to Coral Reef Conservation and Restoration in the Omics Age -- References -- 2: Incorporating Genetic Measures of Connectivity and Adaptation in Marine Spatial Planning for Corals -- 2.1 Introduction -- 2.2 Measuring Coral Connectivity with Genetics -- 2.2.1 Dispersal Estimation for the Cnidarian Host -- 2.2.2 Caveats and Best Practice for Estimating Host Dispersal -- Text Box 2.1 Cryptic Diversity, Hybridization, and Habitat Differentiation -- 2.2.3 Emerging Insights on Symbiont Connectivity -- 2.2.4 Coral Host and Symbiont Genetic Connectivity: Summary and Future Directions -- 2.3 Uncovering the Geography of Adaptive Variation -- 2.4 Incorporating Coral Connectivity and Adaptive Diversity in Spatial Planning and Management -- 2.4.1 Coral Reef Spatial Planning: An Overview -- 2.4.2 Incorporating Connectivity into Marine Spatial Planning -- 2.4.3 Possible Future Pathways to Spatial Planning with Adaptation -- 2.5 Tackling Challenges when Using Genetic Connectivity and Adaptation in Spatial Planning -- 2.5.1 Challenges in Integrating Connectivity and Adaptation in Spatial Planning -- 2.5.2 Possible Surrogates for Connectivity and Adaptation -- 2.6 Conclusions and Future Directions -- References -- 3: Maximizing Genetic Diversity in Coral Restoration Projects -- 3.1 Setting Goals and Benchmarks -- 3.2 Determining Genotypic and Genetic Diversity of Donor Colonies -- 3.3 Determining Genotypic and Genetic Diversity of Associated Symbiodiniaceae -- 3.4 Optimizing Adaptation Potential of Restored Populations -- Box 3.1 Breeding Strategies and Steps to Achieve Larval-based Coral Restoration -- 3.5 Loss of Genetic Diversity due to Senescence of Genets in Declining Wild Populations -- 3.6 Loss of Genetic Diversity over the Course of Development in Larval Cultures. ; 3.6.1 Limited Genotypic Diversity in Spawn Collections -- 3.6.2 Uneven Genet Contribution to Batch Fertilization Cultures -- 3.6.3 Genet-Specific Underperformance During Embryogenesis, Larval Development, and Metamorphosis -- 3.6.4 Genet-Specific Underperformance on the Reef -- 3.6.5 Case Study: Laboratory-Bred Acropora palmata Population on Curaçao -- 3.7 Use of Assisted Gene Flow -- 3.8 Selective Breeding and Genetic Diversity -- 3.9 The Road to Genetic Management Plans -- 3.10 Summary -- References -- 4: Identifying, Monitoring, and Managing Adaptive Genetic Variation in Reef-Building Corals under Rapid Climate Warming -- 4.1 Detecting Adaptive Genetic Variation among and within Populations -- 4.1.1 Phenotypic Approaches -- 4.1.2 Genomic Approaches -- 4.2 Monitoring and Predicting Adaptive Responses -- 4.2.1 Monitoring Approaches -- 4.2.2 Predictive Models -- 4.3 Application of Adaptive Genetic Variation to Conservation and Management -- 4.4 Summary and Conclusions -- References -- 5: Selective Breeding to Enhance the Adaptive Potential of Corals -- 5.1 Introduction -- 5.2 Selective Breeding -- 5.3 Selective Breeding in Corals -- 5.4 Methods and Techniques -- 5.4.1 Sourcing Parental Colonies -- 5.4.2 Spawning to Settlement -- 5.4.3 Trait Validation -- 5.5 Limitations and Consequences -- 5.6 Future Directions -- 5.6.1 Post Hoc Selective Breeding -- 5.6.2 Diversification, Scalability, and Extensions -- 5.6.3 Cryopreservation -- 5.7 Conclusion -- References -- 6: Coral Conservation from the Genomic Perspective on Symbiodiniaceae Diversity and Function in the Holobiont -- 6.1 Introduction -- 6.1.1 Diversity of Symbiodiniaceae and Their Peculiar Genomes -- 6.2 Symbiodiniaceae in the Post-genomic Era -- 6.2.1 Conserved Features and Lineage-Specific Innovations -- 6.2.2 Genome Dynamics Relative to Symbiotic Associations. ; 6.3 Symbiodiniaceae Under the Spotlight of Coral Holobionts -- 6.3.1 Interacting Partners of Symbiodiniaceae in the Context of Coral Holobionts -- 6.4 Beyond Genomics -- 6.4.1 How Do Symbiodiniaceae Generate and Maintain Genetic Diversity? -- 6.4.2 How Do Symbiodiniaceae Respond to Changing Environments in Nature? -- 6.4.3 How Do Symbiodiniaceae Biotic Interactions Sustain the Coral Symbiosis? -- 6.4.4 How Can We Better Understand the Roles of Symbiodiniaceae in Coral Resilience? -- 6.5 Concluding Remarks -- References -- 7: Dynamics of Bacterial Communities on Coral Reefs: Implications for Conservation -- 7.1 Threats to Coral Reef Ecosystems -- 7.2 Spatial and Temporal Patterns in the Coral Microbiome -- 7.2.1 Bacteria Assist in Coral Development and Shift during Host Ontogeny -- 7.2.2 Bacterial Communities Display Spatial and Host Specificity -- 7.3 Functional Roles of Bacteria in the Coral Holobiont -- 7.3.1 Pathogens and Parasites Contribute to Disease and Loss of Corals Directly and Indirectly -- 7.3.2 Antimicrobial Capabilities of Bacteria Regulate Microbiome Composition -- 7.3.3 Bacteria Contribute to Metabolic Expansion and Nutrient Acquisition and Cycling -- 7.4 Community Ecology of the Microbiome during Stress -- 7.4.1 Diversity and Compositional Microbiome Changes Are Commonly Observed during Stress -- 7.4.2 Climate Change Studies Highlight Microbiome Sensitivity to Thermal Stress -- 7.4.3 Thermal Stress Interacts with Other Stressors to Impact Coral Microbiomes -- 7.5 Using Coral Studies to Model Microbiome Resistance and Resilience to Stress -- 7.5.1 Low Resistance Is Characterized by Community Sensitivity -- 7.5.2 High Resistance Is Characterized by Community Stability -- 7.5.3 Resilience Is Characterized by a Return to Community Compositional Stability. ; 7.5.4 Ability to Describe Resistance and Resilience Depends on Experimental Design -- 7.6 Microbial Contributions to Coral Reef Conservation and Restoration -- 7.7 Conclusion -- References -- 8: Increasing Coral Thermal Bleaching Tolerance via the Manipulation of Associated Microbes -- 8.1 Climate Change and Coral Bleaching -- 8.2 Studying the Coral Microbiome with Omics Approaches -- 8.3 Microbiome Manipulation: Definition and Tools for Augmenting Coral Thermal Bleaching Tolerance -- 8.3.1 Functions of Coral-Associated Symbiodiniaceae and Bacteria -- 8.3.2 Role of Coral-Associated Microbes in Coral Thermal Bleaching Tolerance -- 8.3.3 (Whole) Microbiome Transplantation -- 8.3.4 Probiotics -- 8.3.4.1 Symbiodiniaceae -- 8.3.4.2 Bacteria -- 8.3.4.3 Traits, Taxa, and Their Interactions -- 8.3.4.4 Temporal Stability -- 8.3.4.5 Effect on Phenotype -- 8.3.4.6 Location Within the Host -- 8.3.4.7 Optimum Density of the Administered Probiotic, Frequency of Administration, and Mode of Administration -- 8.3.4.8 Life Stage to Which Inoculum Is Administered -- 8.4 Experimental Evolution to Enhance Microbial Traits -- 8.4.1 Symbiodiniaceae -- 8.4.2 Bacteria -- 8.4.3 Viruses as Agents to Modify Bacterial Communities -- 8.4.4 Holobiont Selection -- 8.5 Genetic Modification -- 8.5.1 Symbiodiniaceae -- 8.5.2 Bacteria -- 8.6 Conclusions -- References -- 9: Epigenetics and Acquired Tolerance to Environmental Stress -- 9.1 A Brief History of Epigenetics -- 9.2 Epigenetic Mechanisms -- 9.2.1 DNA Methylation -- 9.2.2 Histone Modifications -- 9.2.3 Non-coding RNAs -- 9.3 Molecular Mechanisms of Epigenetic Transcriptional Memory in Model Organisms -- 9.4 Corals and Phenotypic Plasticity -- 9.5 Acquired Tolerance to Environmental Stress in Corals -- 9.5.1 Acquired Tolerance in Adult Corals -- 9.5.2 Inter- and Transgenerational Acquired Tolerance. ; 9.6 DNA Methylation in Corals -- 9.7 Histone Modifications in Corals -- 9.8 Non-coding RNAs in Corals -- 9.9 A Model for Epigenetic Memory and Acquired Tolerance in Corals -- 9.10 Future Directions -- References -- 10: Can Gene Expression Studies Inform Coral Reef Conservation and Restoration? -- 10.1 Transcriptomics in Coral Biology -- 10.2 Methods for Quantifying Gene Expression -- Box 10.1. The Case for Metatranscriptomics -- 10.3 Contemporary Conservation and Restoration Applications of Functional Genomics -- Box 10.2. The Value of Transcriptomics for Identification of Evolutionarily Significant Units -- 10.4 Taxonomic and Functional Gaps in the Study of Coral Transcriptomics Impede Development of Conservation and Restoration Ap... -- 10.5 Future Directions to Increase the Utility of Gene Expression Analyses for Conservation and Restoration Applications -- 10.5.1 Short-Term Goals with Long-Term Potential -- 10.5.1.1 Delineating Biodiversity -- 10.5.1.2 Generating New Insight Through Meta-Analysis -- 10.5.1.3 Translational Forums to Bridge Disciplines -- 10.5.2 Aims Achievable Within the Next Decade -- 10.5.2.1 Downstream Development and Implementation of Expression Biomarkers -- 10.5.2.2 Capitalizing on Metatranscriptomics to Understand Holobiont Function -- 10.5.2.3 Ecological Annotations to Bring ``Unknowns´´ Out of the Supplement -- 10.5.2.4 Reducing Taxonomic and Functional Bias -- 10.5.2.5 Perfecting the Basics -- 10.6 Looking to the Future -- References -- 11: A Need for Reverse Genetics to Study Coral Biology and Inform Conservation Efforts -- 11.1 A Need for Reverse Genetics to Study Coral Biology -- 11.2 Reverse Genetics as a Powerful Research Tool -- 11.3 State of Play of Reverse-Genetic Tools in Non-coral Cnidarians -- 11.4 State of Play of Reverse-Genetic Tools in Corals -- 11.5 Future Development of Reverse-Genetic Tools in Corals. ; 11.6 Applications of Reverse-Genetic Tools to Aid Coral Conservation.
• Titolo autorizzato: Coral Reef Conservation and Restoration in the Omics Age
• ISBN: 3-031-07055-0
• Formato: Materiale a stampa
• Livello bibliografico: Monografia
• Lingua di pubblicazione: Inglese
• Record Nr.: 9910595052703321
• Lo trovi qui: Univ. Federico II
• Serie: Coral reefs of the world (Springer (Firm)) ; ; Volume 15.