LEADER 05290nam 2200673Ia 450 001 9911020081503321 005 20200520144314.0 010 $a9780470958926 010 $a0470958928 010 $a9780470958858 010 $a0470958855 010 $a9780470958964 010 $a0470958960 035 $a(CKB)2480000000008400 035 $a(EBL)792613 035 $a(OCoLC)695549665 035 $a(SSID)ssj0000506237 035 $a(PQKBManifestationID)11347762 035 $a(PQKBTitleCode)TC0000506237 035 $a(PQKBWorkID)10512903 035 $a(PQKB)10642214 035 $a(MiAaPQ)EBC792613 035 $a(Perlego)1011171 035 $a(EXLCZ)992480000000008400 100 $a20100819d2011 uy 0 101 0 $aeng 135 $aur|n|---||||| 181 $ctxt 182 $cc 183 $acr 200 00$aNext generation sequencing and whole genome selection in aquaculture /$fedited by Zhanjiang (John) Liu 210 $aAmes, Iowa $cWiley-Blackwell$d2011 215 $a1 online resource (484 p.) 300 $aDescription based upon print version of record. 311 08$a9780813806372 311 08$a0813806372 320 $aIncludes bibliographical references and index. 327 $aCover; Half title page; Title page; Copyright page; Preface; List of Contributors; Genetic Variations at the Genomic Level; A Review of DNA Marker Technologies; Trend of DNA Marker Technologies; Assessment of the Usefulness of Various Markers for Genome-based Selection; Acknowledgments; Chapter 1 Genomic Variations and Marker Technologies for Genome-based Selection; Characteristics of CNVs; Impact of CNVs on Gene Expression and Phenotypes; Methods for CNV Detection and Analysis; Genome-wide Association Studies Using CNV; Chapter 2 Copy Number Variations; Introduction 327 $aNext Generation Sequencing: The Current PlatformsApplication of Next Generation Sequencing Technologies; Next-Next Generation Sequencing; Perspectives; Chapter 3 Next Generation DNA Sequencing Technologies and Applications; Sample Preparation for Illumina Sequencing; Indexed Libraries for Sequencing Multiple Samples in a Single Lane; Sample Preparation for 454 Sequencing; Sample Preparation for Sequencing Multiplexed Samples Using SOLiD Sequencing; Acknowledgments; Chapter 4 Library Construction for Next Generation Sequencing; Introduction 327 $aAn Example of SNP Discovery via Pyrosequencing of RRLsConclusions; Acknowledgments; Chapter 5 SNP Discovery through De Novo Deep Sequencing Using the Next Generation of DNA Sequencers; Advantages and Disadvantages of SNP Discovery through EST Data Mining; SNP Discovery Using ESTs Generated by Sanger Sequencing; SNP Discovery Using Transcript Sequences Generated by Next Generation Sequencing; Windows-Based Platforms for EST Assembly and SNP Identification; Summary; Chapter 6 SNP Discovery through EST Data Mining; Quality Assessment Parameters for EST-derived SNPs 327 $aAssessment of SNP Distribution in the GenomeQuality Issues of SNPs Generated from Sequencing RRLs; Conclusions; Chapter 7 SNP Quality Assessment; SNP Genotyping Platforms: Chemistries and Detection Methods; SNP Genotyping Platforms: Throughput and Multiplexing; SNP Genotyping Platforms: Cost and Flexibility; SNP Genotyping Platforms: Matching Platforms with Project Goals; Conclusions; Chapter 8 SNP Genotyping Platforms; Applications of SNP Markers; Genome Duplication in Fish; Identifying and Genotyping SNPs in Duplicated Fish Genomes; Concluding Remarks; Acknowledgment 327 $aChapter 9 SNP Analysis with Duplicated Fish Genomes: Differentiation of SNPs, Paralogous Sequence Variants, and Multisite VariantsThe Steps for Genomic Selection; Traits; Breeding Value Estimation for Genomic Selection; Within-Family Genomic Selection; Effect on Genetic Gain; Accuracy of GWEBV; Quality of SNP Chip; Design of Genomic Selection Schemes for Aquaculture; Chapter 10 Genomic Selection for Aquaculture: Principles and Procedures; Introduction; Genomic Selection: Definition and Theory; Future Directions; Summary 327 $aChapter 11 Genomic Selection in Aquaculture: Methods and Practical Considerations 330 $aRecent developments in DNA marker technologies, in particular the emergence of Single Nucleotide Polymorphism (SNP) discovery, have rendered some of the traditional methods of genetic research outdated. Next Generation Sequencing and Whole Genome Selection in Aquaculture comprehensively covers the current state of research in whole genome selection and applies these discoveries to the aquaculture industry specifically. The text begins with a thorough review of SNP and transitions into topics such as next generation sequencing, EST data mining, SNP quality assessment, and whole genome se 606 $aGene mapping 606 $aFishes$xBreeding 606 $aShellfish$xBreeding 615 0$aGene mapping. 615 0$aFishes$xBreeding. 615 0$aShellfish$xBreeding. 676 $a639.8 701 $aLiu$b Zhanjiang$0882863 801 0$bMiAaPQ 801 1$bMiAaPQ 801 2$bMiAaPQ 906 $aBOOK 912 $a9911020081503321 996 $aNext generation sequencing and whole genome selection in aquaculture$94417688 997 $aUNINA