LEADER 07461nam 2200769 450 001 9910828144803321 005 20240219151734.0 010 $a1-118-56781-1 010 $a1-118-56786-2 010 $a1-118-56792-7 024 7 $a10.1002/9781118567869 035 $a(CKB)2550000001138470 035 $a(EBL)1465941 035 $a(SSID)ssj0001056006 035 $a(PQKBManifestationID)11678591 035 $a(PQKBTitleCode)TC0001056006 035 $a(PQKBWorkID)11036894 035 $a(PQKB)11128495 035 $a(CaBNVSL)mat06670808 035 $a(IDAMS)0b00006481f6fa24 035 $a(IEEE)6670808 035 $a(WaSeSS)IndRDA00019609 035 $a(Au-PeEL)EBL1465941 035 $a(CaPaEBR)ebr10788028 035 $a(CaONFJC)MIL538171 035 $a(PPN)255934254 035 $a(OCoLC)862077228 035 $a(CaSebORM)9781118567814 035 $a(MiAaPQ)EBC1465941 035 $a(EXLCZ)992550000001138470 100 $a20151222d2013 uy 101 0 $aeng 135 $aur|n|---||||| 181 $ctxt 182 $cc 183 $acr 200 00$aAlgorithmic and artificial intelligence methods for protein bioinformatics /$fedited by Yi Pan, Jianxin Wang, Min Li 205 $aFirst edition. 210 1$aHoboken, New Jersey :$cWiley :$cIEEE Computer Society,$d[2014] 210 2$a[Piscataqay, New Jersey] :$cIEEE Xplore,$d[2014] 215 $a1 online resource (708 p.) 225 1 $aWiley series in bioinformatics ;$v22 300 $aDescription based upon print version of record. 311 $a1-118-34578-9 311 $a1-306-06920-3 320 $aIncludes bibliographical references at the end of each chapters and index. 327 $aPREFACE ix -- CONTRIBUTORS xv -- I FROM PROTEIN SEQUENCE TO STRUCTURE -- 1 EMPHASIZING THE ROLE OF PROTEINS IN CONSTRUCTION OF THE DEVELOPMENTAL GENETIC TOOLKIT IN PLANTS 3 -- Anamika Basu and Anasua Sarkar -- 2 PROTEIN SEQUENCE MOTIF INFORMATION DISCOVERY 41 -- Bernard Chen -- 3 IDENTIFYING CALCIUM BINDING SITES IN PROTEINS 57 -- Hui Liu and Hai Deng -- 4 REVIEW OF IMBALANCED DATA LEARNING FOR PROTEIN METHYLATION PREDICTION 71 -- Zejin Ding and Yan-Qing Zhang -- 5 ANALYSIS AND PREDICTION OF PROTEIN POSTTRANSLATIONAL MODIFICATION SITES 91 -- Jianjiong Gao, Qiuming Yao, Curtis Harrison Bollinger, and Dong Xu -- II PROTEIN ANALYSIS AND PREDICTION -- 6 PROTEIN LOCAL STRUCTURE PREDICTION 109 -- Wei Zhong, Jieyue He, Robert W. Harrison, Phang C. Tai, and Yi Pan -- 7 PROTEIN STRUCTURAL BOUNDARY PREDICTION 125 -- Gulsah Altun -- 8 PREDICTION OF RNA BINDING SITES IN PROTEINS 153 -- Zhi-Ping Liu and Luonan Chen -- 9 ALGORITHMIC FRAMEWORKS FOR PROTEIN DISULFIDE CONNECTIVITY DETERMINATION 171 -- Rahul Singh, William Murad, and Timothy Lee -- 10 PROTEIN CONTACT ORDER PREDICTION: UPDATE 205 -- Yi Shi, Jianjun Zhou, David S. Wishart, and Guohui Lin -- 11 PROGRESS IN PREDICTION OF OXIDATION STATES OF CYSTEINES VIA COMPUTATIONAL APPROACHES 217 -- Aiguo Du, Hui Liu, Hai Deng, and Yi Pan -- 12 COMPUTATIONAL METHODS IN CRYOELECTRON MICROSCOPY 3D STRUCTURE RECONSTRUCTION 231 -- Fa Zhang, Xiaohua Wan, and Zhiyong Liu -- III PROTEIN STRUCTURE ALIGNMENT AND ASSESSMENT -- 13 FUNDAMENTALS OF PROTEIN STRUCTURE ALIGNMENT 255 -- Mark Brandt, Allen Holder, and Yosi Shibberu -- 14 DISCOVERING 3D PROTEIN STRUCTURES FOR OPTIMAL STRUCTURE ALIGNMENT 281 -- Toma?S Novosa?d, Va?clav Sna-Sel, Ajith Abraham, and Jack Y. Yang -- 15 ALGORITHMIC METHODOLOGIES FOR DISCOVERY OF NONSEQUENTIAL PROTEIN STRUCTURE SIMILARITIES 299 -- Bhaskar DasGupta, Joseph Dundas, and Jie Liang -- 16 FRACTAL RELATED METHODS FOR PREDICTING PROTEIN STRUCTURE CLASSES AND FUNCTIONS 317 -- Zu-Guo Yu, Vo Anh, Jian-Yi Yang, and Shao-Ming Zhu. 327 $a17 PROTEIN TERTIARY MODEL ASSESSMENT 339 -- Anjum Chida, Robert W. Harrison, and Yan-Qing Zhang -- IV PROTEIN-PROTEIN ANALYSIS OF BIOLOGICAL NETWORKS -- 18 NETWORK ALGORITHMS FOR PROTEIN INTERACTIONS 357 -- Suely Oliveira -- 19 IDENTIFYING PROTEIN COMPLEXES FROM PROTEIN-PROTEIN INTERACTION NETWORKS 377 -- Jianxin Wang, Min Li, and Xiaoqing Peng -- 20 PROTEIN FUNCTIONAL MODULE ANALYSIS WITH PROTEIN-PROTEIN INTERACTION (PPI) NETWORKS 393 -- Lei Shi, Xiujuan Lei, and Aidong Zhang -- 21 EFFICIENT ALIGNMENTS OF METABOLIC NETWORKS WITH BOUNDED TREEWIDTH 413 -- Qiong Cheng, Piotr Berman, Robert W. Harrison, and Alexander Zelikovsky -- 22 PROTEIN-PROTEIN INTERACTION NETWORK ALIGNMENT: ALGORITHMS AND TOOLS 431 -- Valeria Fionda -- V APPLICATION OF PROTEIN BIOINFORMATICS -- 23 PROTEIN-RELATED DRUG ACTIVITY COMPARISON USING SUPPORT VECTOR MACHINES 451 -- Wei Zhong and Jieyue He -- 24 FINDING REPETITIONS IN BIOLOGICAL NETWORKS: CHALLENGES, TRENDS, AND APPLICATIONS 461 -- Simona E. Rombo -- 25 MeTaDoR: ONLINE RESOURCE AND PREDICTION SERVER FOR MEMBRANE TARGETING PERIPHERAL PROTEINS 481 -- Nitin Bhardwaj, Morten Ka?llberg, Wonhwa Cho, and Hui Lu -- 26 BIOLOGICAL NETWORKS-BASED ANALYSIS OF GENE EXPRESSION SIGNATURES 495 -- Gang Chen and Jianxin Wang -- INDEX 507. 330 $aAn in-depth look at the latest research, methods, and applications in the field of protein bioinformaticsThis book presents the latest developments in protein bioinformatics, introducing for the first time cutting-edge research results alongside novel algorithmic and AI methods for the analysis of protein data. In one complete, self-contained volume, Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics addresses key challenges facing both computer scientists and biologists, arming readers with tools and techniques for analyzing and interpreting protein data and solving a variety of biological problems.Featuring a collection of authoritative articles by leaders in the field, this work focuses on the analysis of protein sequences, structures, and interaction networks using both traditional algorithms and AI methods. It also examines, in great detail, data preparation, simulation, experiments, evaluation methods, and applications. Algorithmic and Artificial Intelligence Methods for Protein Bioinformatics:. Highlights protein analysis applications such as protein-related drug activity comparison. Incorporates salient case studies illustrating how to apply the methods outlined in the book. Tackles the complex relationship between proteins from a systems biology point of view. Relates the topic to other emerging technologies such as data mining and visualization. Includes many tables and illustrations demonstrating concepts and performance figuresAlgorithmic and Artificial Intelligence Methods for Protein Bioinformatics is an essential reference for bioinformatics specialists in research and industry, and for anyone wishing to better understand the rich field of protein bioinformatics. 410 0$aWiley series on bioinformatics: Computational techniques and engineering ;$v22 606 $aProteins$xAnalysis$xMathematics 606 $aBioinformatics 606 $aArtificial intelligence 615 0$aProteins$xAnalysis$xMathematics. 615 0$aBioinformatics. 615 0$aArtificial intelligence. 676 $a572/.6 702 $aPan$b Yi$f1960-, 702 $aWang$b Jianxin$f1969-, 702 $aLi$b Min$f1978-, 801 0$bCaBNVSL 801 1$bCaBNVSL 801 2$bCaBNVSL 906 $aBOOK 912 $a9910828144803321 996 $aAlgorithmic and artificial intelligence methods for protein bioinformatics$93993103 997 $aUNINA