LEADER 04887nam 22008295 450 001 9910597155503321 005 20240618141839.0 010 $a3-030-76394-3 024 7 $a10.1007/978-3-030-76394-7 035 $a(CKB)4960000000268533 035 $a(DE-He213)978-3-030-76394-7 035 $a(MiAaPQ)EBC7102252 035 $a(Au-PeEL)EBL7102252 035 $a(OCoLC)1346984629 035 $a(oapen)https://directory.doabooks.org/handle/20.500.12854/92877 035 $a(PPN)264957482 035 $a(EXLCZ)994960000000268533 100 $a20220928d2022 u| 0 101 0 $aeng 135 $aurnn#008mamaa 181 $ctxt$2rdacontent 182 $cc$2rdamedia 183 $acr$2rdacarrier 200 10$aBioimage Data Analysis Workflows ? Advanced Components and Methods /$fedited by Kota Miura, Nata?a Sladoje 205 $a1st ed. 2022. 210 $aCham$cSpringer Nature$d2022 210 1$aCham :$cSpringer International Publishing :$cImprint: Springer,$d2022. 215 $a1 online resource (X, 212 p. 265 illus. in color.) 225 1 $aLearning Materials in Biosciences,$x2509-6133 311 $a3-030-76393-5 327 $aIntroduction -- Batch Processing Methods in ImageJ -- Python: Data Handling, Analysis and Plotting -- Building a Bioimage Analysis Workflow Using Deep Learning -- GPU-Accelerating ImageJ Macro Image Processing Workflows Using CLIJ -- How to Do the Deconstruction of Bioimage Analysis Workflows: A Case Study with SurfCut -- i.2.i. with the (Fruit) Fly: Quantifying Position Effect Variegation in Drosophila Melanogaster -- A MATLAB Pipeline for Spatiotemporal Quantification of Monolayer Cell Migration. 330 $aThis open access textbook aims at providing detailed explanations on how to design and construct image analysis workflows to successfully conduct bioimage analysis. Addressing the main challenges in image data analysis, where acquisition by powerful imaging devices results in very large amounts of collected image data, the book discusses techniques relying on batch and GPU programming, as well as on powerful deep learning-based algorithms. In addition, downstream data processing techniques are introduced, such as Python libraries for data organization, plotting, and visualizations. Finally, by studying the way individual unique ideas are implemented in the workflows, readers are carefully guided through how the parameters driving biological systems are revealed by analyzing image data. These studies include segmentation of plant tissue epidermis, analysis of the spatial pattern of the eye development in fruit flies, and the analysis of collective cell migration dynamics. The presented content extends the Bioimage Data Analysis Workflows textbook (Miura, Sladoje, 2020), published in this same series, with new contributions and advanced material, while preserving the well-appreciated pedagogical approach adopted and promoted during the training schools for bioimage analysis organized within NEUBIAS ? the Network of European Bioimage Analysts. This textbook is intended for advanced students in various fields of the life sciences and biomedicine, as well as staff scientists and faculty members who conduct regular quantitative analyses of microscopy images. 410 0$aLearning Materials in Biosciences,$x2509-6133 606 $aCytology 606 $aBioinformatics 606 $aImaging systems in biology 606 $aCell Biology 606 $aComputational and Systems Biology 606 $aBiological Imaging 606 $aMicroscòpia electrònica$2thub 608 $aLlibres electrònics$2thub 610 $aAnalyzing Image Data in Biology 610 $aBuilding a Bioimage Analysis Workflow 610 $aComputational Analysis 610 $aChosing the Correct Components for Given Biological Questions 610 $aData Handling and Plotting 610 $aDeep Learning 610 $aFast Computation 610 $aGPU-Acceleration 610 $aHandling Biological data 610 $aMachine Learning 610 $aPhyton 610 $aProcessing Language 610 $aUnderstanding Bioimage Analysis Software 615 0$aCytology. 615 0$aBioinformatics. 615 0$aImaging systems in biology. 615 14$aCell Biology. 615 24$aComputational and Systems Biology. 615 24$aBiological Imaging. 615 7$aMicroscòpia electrònica 676 $a571.6 700 $aMiura$b Kota$4edt$01355558 702 $aMiura$b Kota$4edt$4http://id.loc.gov/vocabulary/relators/edt 702 $aSladoje$b Nata?a$4edt$4http://id.loc.gov/vocabulary/relators/edt 801 0$bMiAaPQ 801 1$bMiAaPQ 801 2$bMiAaPQ 906 $aBOOK 912 $a9910597155503321 996 $aBioimage Data Analysis Workflows ? Advanced Components and Methods$93359688 997 $aUNINA