LEADER 04707 am 22007213u 450 001 9910337952203321 005 20230125212425.0 010 $a3-030-13845-3 024 7 $a10.1007/978-3-030-13845-5 035 $a(CKB)4100000008409168 035 $a(DE-He213)978-3-030-13845-5 035 $a(MiAaPQ)EBC5788423 035 $a(Au-PeEL)EBL5788423 035 $a(OCoLC)1106161463 035 $a(oapen)https://directory.doabooks.org/handle/20.500.12854/28122 035 $a(PPN)258059214 035 $a(EXLCZ)994100000008409168 100 $a20190610d2019 u| 0 101 0 $aeng 135 $aurnn#008mamaa 181 $ctxt$2rdacontent 182 $cc$2rdamedia 183 $acr$2rdacarrier 200 10$aData and Text Processing for Health and Life Sciences$b[electronic resource] /$fby Francisco M. Couto 205 $a1st ed. 2019. 210 $aCham$cSpringer Nature$d2019 210 1$aCham :$cSpringer International Publishing :$cImprint: Springer,$d2019. 215 $a1 online resource (XV, 98 p. 483 illus., 74 illus. in color.) 225 1 $aAdvances in Experimental Medicine and Biology,$x0065-2598 ;$v1137 311 $a3-030-13844-5 327 $aPreface -- Introduction -- Resources -- Data Retrieval -- Text Processing -- Semantic processing -- Index. 330 $aThis open access book is a step-by-step introduction on how shell scripting can help solve many of the data processing tasks that Health and Life specialists face everyday with minimal software dependencies. The examples presented in the book show how simple command line tools can be used and combined to retrieve data and text from web resources, to filter and mine literature, and to explore the semantics encoded in biomedical ontologies. To store data this book relies on open standard text file formats, such as TSV, CSV, XML, and OWL, that can be open by any text editor or spreadsheet application. The first two chapters, Introduction and Resources, provide a brief introduction to the shell scripting and describe popular data resources in Health and Life Sciences. The third chapter, Data Retrieval, starts by introducing a common data processing task that involves multiple data resources. Then, this chapter explains how to automate each step of that task by introducing the required commands line tools one by one. The fourth chapter, Text Processing, shows how to filter and analyze text by using simple string matching techniques and regular expressions. The last chapter, Semantic Processing, shows how XPath queries and shell scripting is able to process complex data, such as the graphs used to specify ontologies. Besides being almost immutable for more than four decades and being available in most of our personal computers, shell scripting is relatively easy to learn by Health and Life specialists as a sequence of independent commands. Comprehending them is like conducting a new laboratory protocol by testing and understanding its procedural steps and variables, and combining their intermediate results. Thus, this book is particularly relevant to Health and Life specialists or students that want to easily learn how to process data and text, and which in return may facilitate and inspire them to acquire deeper bioinformatics skills in the future. 410 0$aAdvances in Experimental Medicine and Biology ;$v1137 606 $aCancer research 606 $aHuman genetics 606 $aDatabase management 606 $aData mining 606 $aCancer Research$3https://scigraph.springernature.com/ontologies/product-market-codes/B11001 606 $aHuman Genetics$3https://scigraph.springernature.com/ontologies/product-market-codes/B12008 606 $aDatabase Management$3https://scigraph.springernature.com/ontologies/product-market-codes/I18024 606 $aData Mining and Knowledge Discovery$3https://scigraph.springernature.com/ontologies/product-market-codes/I18030 610 $aMedicine 610 $aCancer research 610 $aHuman genetics 610 $aDatabase management 610 $aData mining 615 0$aCancer research. 615 0$aHuman genetics. 615 0$aDatabase management. 615 0$aData mining. 615 14$aCancer Research. 615 24$aHuman Genetics. 615 24$aDatabase Management. 615 24$aData Mining and Knowledge Discovery. 676 $a614.5999 700 $aCouto$b Francisco M$4aut$4http://id.loc.gov/vocabulary/relators/aut$0959088 801 0$bMiAaPQ 801 1$bMiAaPQ 801 2$bMiAaPQ 906 $aBOOK 912 $a9910337952203321 996 $aData and Text Processing for Health and Life Sciences$92172900 997 $aUNINA