LEADER 04006nam 22007095 450 001 9910254246603321 005 20200629123618.0 010 $a981-10-0591-5 024 7 $a10.1007/978-981-10-0591-6 035 $a(CKB)3710000000611365 035 $a(EBL)4436664 035 $a(SSID)ssj0001653298 035 $a(PQKBManifestationID)16433498 035 $a(PQKBTitleCode)TC0001653298 035 $a(PQKBWorkID)14982813 035 $a(PQKB)10257739 035 $a(DE-He213)978-981-10-0591-6 035 $a(MiAaPQ)EBC4436664 035 $a(PPN)192772546 035 $a(EXLCZ)993710000000611365 100 $a20160302d2016 u| 0 101 0 $aeng 135 $aur|n|---||||| 181 $ctxt 182 $cc 183 $acr 200 10$aArchitecture Exploration of FPGA Based Accelerators for BioInformatics Applications /$fby B. Sharat Chandra Varma, Kolin Paul, M. Balakrishnan 205 $a1st ed. 2016. 210 1$aSingapore :$cSpringer Singapore :$cImprint: Springer,$d2016. 215 $a1 online resource (133 p.) 225 1 $aSpringer Series in Advanced Microelectronics,$x1437-0387 ;$v55 300 $aDescription based upon print version of record. 311 $a981-10-0589-3 320 $aIncludes bibliographical references at the end of each chapters and index. 327 $aIntroduction -- Related Work -- Methodology for Implementing Accelerators -- FPGA based Acceleration of Protein Docking -- FPGA based Acceleration of De Novo Genome Assembly -- Design of Accelerators with HEBs -- System Level Design Space Exploration -- Future Directions. 330 $aThis book presents an evaluation methodology to design future FPGA fabrics incorporating hard embedded blocks (HEBs) to accelerate applications. This methodology will be useful for selection of blocks to be embedded into the fabric and for evaluating the performance gain that can be achieved by such an embedding. The authors illustrate the use of their methodology by studying the impact of HEBs on two important bioinformatics applications: protein docking and genome assembly. The book also explains how the respective HEBs are designed and how hardware implementation of the application is done using these HEBs. It shows that significant speedups can be achieved over pure software implementations by using such FPGA-based accelerators. The methodology presented in this book may also be used for designing HEBs for accelerating software implementations in other domains besides bioinformatics. This book will prove useful to students, researchers, and practicing engineers alike. 410 0$aSpringer Series in Advanced Microelectronics,$x1437-0387 ;$v55 606 $aElectronic circuits 606 $aBioinformatics 606 $aElectronics 606 $aMicroelectronics 606 $aCircuits and Systems$3https://scigraph.springernature.com/ontologies/product-market-codes/T24068 606 $aComputational Biology/Bioinformatics$3https://scigraph.springernature.com/ontologies/product-market-codes/I23050 606 $aElectronics and Microelectronics, Instrumentation$3https://scigraph.springernature.com/ontologies/product-market-codes/T24027 615 0$aElectronic circuits. 615 0$aBioinformatics. 615 0$aElectronics. 615 0$aMicroelectronics. 615 14$aCircuits and Systems. 615 24$aComputational Biology/Bioinformatics. 615 24$aElectronics and Microelectronics, Instrumentation. 676 $a621.395 700 $aVarma$b B. Sharat Chandra$4aut$4http://id.loc.gov/vocabulary/relators/aut$0761375 702 $aPaul$b Kolin$4aut$4http://id.loc.gov/vocabulary/relators/aut 702 $aBalakrishnan$b M$4aut$4http://id.loc.gov/vocabulary/relators/aut 801 0$bMiAaPQ 801 1$bMiAaPQ 801 2$bMiAaPQ 906 $aBOOK 912 $a9910254246603321 996 $aArchitecture Exploration of FPGA Based Accelerators for BioInformatics Applications$92540612 997 $aUNINA