Alignment-free models in plant genomics : theoretical, experimental, and legal issues / / Humberto González-Díaz ... [et al.]

• Record Nr.: UNINA9910968260403321
• Pubbl/distr/stampa: New York, : Nova Science Publishers, 2010
• ISBN: 1-61668-603-0
• Edizione: [1st ed.]
• Descrizione fisica: 1 online resource (94 p.)
• Collana: Agriculture issues and policies
• Altri autori (Persone): González-DíazHumberto
• Disciplina: 581.35015118
• Soggetti: Plant genome mapping; Bioinformatics - Mathematical models; QSAR (Biochemistry)
• Lingua di pubblicazione: Inglese
• Formato: Materiale a stampa
• Livello bibliografico: Monografia
• Note generali: Description based upon print version of record.
• Nota di bibliografia: Includes bibliographical references and index.
• Nota di contenuto: Intro -- ALIGNMENT-FREE MODELS IN PLANT GENOMICS: THEORETICAL, EXPERIMENTAL, AND LEGAL ISSUES -- ALIGNMENT-FREE MODELS IN PLANT GENOMICS: THEORETICAL, EXPERIMENTAL, AND LEGAL ISSUES -- CONTENTS -- PREFACE -- Chapter 1 INTRODUCTION -- Chapter 2 RESULTS AND DISCUSSION. 1. FIRST PART: THEORETICAL BASES OF MARCH-INSIDE SEQUENCE PSEUDO-FOLDING INDICES -- 1.1. CALCULATING PSEUDO-FOLDING TOPOLOGICAL INDICES WITH MARCH-INSIDE APPROACH -- 1.2. FINDING THE PSEUDO-FOLDING QSAR MODELS WITH LINEAR DISCRIMINANT ANALYSIS (LDA) -- Chapter 3 2. SECOND PART: MARCH-INSIDE MODELS RELEVANT TO PLANT GENOMICS -- 2.1. PSEUDO-FOLDING QSAR MODELS FOR DISCOVERY OF PLANT RNASE PROTEINS AND GENE -- 2.2. PSEUDO-FOLDING QSAR MODELS FOR DISCOVERY OF PLANT ACOS PROTEINS AND GENE -- 2.3. PSEUDO-FOLDING QSAR MODELS FOR DISCOVERY OF PLANT PGS PROTEINS AND GENE -- 2.3. PSEUDO-FOLDING QSAR MODELS FOR ANNOTATION OF PLANT RIBOSOMAL RNA AND GENE -- Chapter 4 3. THIRD PART: LEGAL ISSUES RELATED QSAR AND BIOINFORMATICS IN PLANT GENOMICS -- 3.1. INTELLECTUAL PROPERTY ISSUES IN PLANT GENOMIC -- Patent on Plant -- Plant Variety Protection -- International Trends in Plant Variety Protection Rights -- 3.2. METHODS FOR LEGAL PROTECTION OF BIOINFORMATICS COMPUTER SOFTWARE IN PLANT GENOMICS -- 3.2.1. Intellectual Property Protection -- 3.2.1.2. ; Copyright -- Patent Protection in Genomics -- Trade Secret Protection -- Trademark Protection -- Copyright and Contractual Issues -- 3.2.2. Tax Issues for Software Used in Genomics -- 3.3. SCIENTIFIC SOFTWARE RESULTS: LEGAL ACCEPTANCE -- 3.3.1. Regulatory Uses for QSAR Models Relevant to Drug Design and/or Genomics -- CONCLUSIONS -- ACKNOWLEDGMENTS -- REFERENCES -- INDEX -- Blank Page.
• Sommario/riassunto: The MARCH-INSIDE approach is a computational method that can be used to seek quantitative structure-property relationships (QSAR) models in genes and their product. This book reviews previous applications of MARCH-INSIDE.