Cover -- Title Page -- Copyright Page -- Contents in Brief -- Contents -- Preface to the Third Edition -- About the Companion Website -- Part I Analyzing DNA, RNA, and Protein Sequences -- 1 Introduction -- 2 Access to Sequence Data and Related Information -- 3 Pairwise Sequence Alignment -- 4 Basic Local Alignment Search Tool (BLAST) -- 5 Advanced Database Searching -- 6 Multiple Sequence Alignment -- 7 Molecular Phylogeny and Evolution -- Part II Genomewide Analysis of DNA, RNA, and Protein -- 8 DNA: The Eukaryotic Chromosome -- 9 Analysis of Next-Generation Sequence Data -- 10 Bioinformatic Approaches to Ribonucleic Acid (RNA) -- 11 Gene Expression: Microarray and RNA-seq Data Analysis -- 12 Protein Analysis and Proteomics -- 13 Protein Structure -- 14 Functional Genomics -- Part III Genome Analysis -- 15 Genomes Across the Tree of Life -- 16 Completed Genomes: Viruses -- 17 Completed Genomes: Bacteria and Archaea -- 18 Eukaryotic Genomes: Fungi -- 19 Eukaryotic Genomes: From Parasites to Primates -- 20 Human Genome -- 21 Human Disease -- Glossary -- Self-Test Quiz: Solutions -- Author Index -- Subject Index -- Wiley End User License Agreement. |