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Record Nr. |
UNINA9910784903403321 |
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Titolo |
Bioinformatics : high performance parallel computer architectures / / edited by Bertil Schmidt |
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Pubbl/distr/stampa |
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Boca Raton : , : CRC Press, , 2010 |
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ISBN |
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0-429-13222-0 |
1-4398-1489-9 |
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Descrizione fisica |
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1 online resource (372 p.) |
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Collana |
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Embedded multi-core systems |
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Altri autori (Persone) |
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Disciplina |
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Soggetti |
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Bioinformatics - Data processing |
Parallel processing (Electronic computers) |
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Lingua di pubblicazione |
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Formato |
Materiale a stampa |
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Livello bibliografico |
Monografia |
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Note generali |
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Description based upon print version of record. |
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Nota di bibliografia |
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Includes bibliographical references and index. |
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Nota di contenuto |
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Front cover; Contents; Editor; Contributors; Chapter 1: Algorithms for Bioinformatics; Chapter 2: Introduction to GPGPUs andMassively Threaded Programming; Chapter 3: FPGA: Architecture and Programming; Chapter 4: Parallel Algorithms forAlignments on the Cell BE; Chapter 5: Orchestrating the PhylogeneticLikelihood Function on EmergingParallel Architectures; Chapter 6: Parallel Bioinformatics Algorithmsfor CUDA-Enabled GPUs; Chapter 7: CUDA Error Correction Method forHigh-Throughput Short-Read Sequencing Data; Chapter 8: FPGA Acceleration of SeededSimilarity Searching |
Chapter 9: Seed-Based Parallel Protein SequenceComparison Combining Multithreading,GPU, and FPGA TechnologiesChapter 10: Database Searching with Profi le-HiddenMarkov Models on Reconfi gurableand Many-Core Architectures; Chapter 11: COPACOBANA: A Massively ParallelFPGA-Based Computer Architecture; Chapter 12: Accelerating String Set Matching forBioinformatics Using FPGA Hardware; Chapter 13: Reconfi gurable Neural System and ItsApplication to Dimeric ProteinBinding Site Identification; Chapter 14: Parallel FPGA Search Enginefor Protein Identification; Index; Back cover |
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Sommario/riassunto |
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New sequencing technologies have broken many experimental barriers to genome scale sequencing, leading to the extraction of huge quantities of sequence data. This expansion of biological databases |
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