Omics of climate resilient small millets / / edited by Ramesh Namdeo Pudake, [and three others]

• Record Nr.: UNINA9910584478403321
• Pubbl/distr/stampa: Singapore : , : Springer, , [2022]; ©2022
• ISBN: 981-19-3907-1
• Descrizione fisica: 1 online resource (363 pages)
• Disciplina: 304.2
• Soggetti: Genomics
• Lingua di pubblicazione: Inglese
• Formato: Materiale a stampa
• Livello bibliografico: Monografia
• Nota di bibliografia: Includes bibliographical references.
• Nota di contenuto: Intro -- Preface -- Contents -- Editors and Contributors -- 1: Small Millets: The Next-Generation Smart Crops in the Modern Era of Climate Change -- 1.1 Introduction -- 1.2 Salient Features of Small Millets -- 1.2.1 Finger Millet (Eleusine coracana L. Gaertn) -- 1.2.2 Foxtail Millet (Setaria Italica L.) -- 1.2.3 Proso Millet (Panicum miliaceum L.) -- 1.2.4 Barnyard Millet (Echinochloa frumentacea L.) -- 1.2.5 Little Millet (Panicum sumatrense Roth. ex Roem. and Schult) -- 1.2.6 Kodo Millet -- 1.2.7 Brown-Top Millet -- 1.3 Small Millets as Functional Foods -- 1.4 Small Millets as Climate-Smart Crops -- 1.4.1 Millets as a Driver of Climate-Smart Agriculture -- 1.4.1.1 Productivity of Small Millets -- 1.4.1.2 Adapting to Changing Climate -- 1.4.1.3 Mitigating Climate Change -- 1.5 Climate-Smart Small Millets Production Practices -- 1.5.1 Integrated Nutrient Management (INM) -- 1.5.2 Soil Test Crop Response (STCR)-Based Nutrient Management -- 1.5.3 Resource Conserving Technologies -- 1.5.4 Breeding of Suitable Varieties -- 1.5.5 Agronomic Practice Adjustment -- 1.5.6 System of Millet Intensification -- 1.6 Conclusion -- References -- 2: Omics for Abiotic Stress Tolerance in Foxtail Millet -- 2.1 Introduction -- 2.2 Characterization of Abiotic Stress Tolerance Mechanism in Foxtail Millet -- 2.2.1 Genomics Studies in Foxtail Millets to Understand Abiotic Stress -- 2.2.2 Functional Genomics -- 2.2.3 Transcriptomics -- 2.2.4 Proteomics -- 2.2.5 Metabolomics -- 2.2.6 Phenomics -- 2.3 Conclusion -- References -- 3: Current Status and Future Prospects of ; Omics Strategies in Barnyard Millet -- 3.1 Introduction -- 3.2 Omics in Barnyard Millet -- 3.2.1 Studies on Nuclear Genome -- 3.2.2 Chloroplast Genome Studies -- 3.2.3 Transcriptomics Studies -- 3.2.4 Proteomics Studies -- 3.3 Application of Omics in Barnyard Millet -- 3.3.1 Genetic Diversity Studies.; 3.3.2 Gene/QTL Mapping -- 3.3.3 Comparative Genomics Studies -- 3.4 Summary and Future Perspective -- References -- 4: Role of Inducible Promoters and Transcription Factors in Conferring Abiotic Stress-Tolerance in Small Millets -- 4.1 Introduction -- 4.2 Plant Responses to Abiotic Stresses -- 4.3 Mining of Transcription Factors (TFs) and Inducible Promoters and their Role in Combating Abiotic Stresses -- 4.3.1 Finger Millet -- 4.3.2 Foxtail Millet -- 4.3.3 Other Small Millets -- 4.4 Comparative Analysis of TFs across Millets -- 4.5 Future Prospects -- References -- 5: Genome-Wide Identification and Expression Profiling of Noncoding RNAs in Response to Abiotic Stresses in Small Millets -- 5.1 Introduction -- 5.2 Noncoding RNA -- 5.2.1 Role of Millets microRNA during Abiotic Stress Conditions -- 5.2.1.1 Methods to Identify Abiotic Stress-Related miRNA -- 5.2.1.2 Abiotic Stress-Responsive miRNAs in Small Millets -- 5.2.2 Role of lncRNA in Abiotic Stress -- 5.2.3 LncRNA and their Role in Abiotic Stress -- 5.2.4 Drought-Responsive siRNA in Small Millets -- 5.3 Databases and Tools Used for Identification and Analysis of Noncoding RNA in Small Millets -- 5.4 Conclusion -- References -- 6: Insights into Abiotic Stress Tolerance in Small Millets through Transcriptomics -- 6.1 Introduction -- 6.2 Millets and Abiotic Stresses -- 6.3 Transcriptome Efforts in Small Millets -- 6.3.1 Finger Millet (Eleusine coracana L. Gaertn) -- 6.3.2 Barnyard Millet (Echinochloa esculenta A. Braun) -- 6.3.3 Proso Millet (Panicum miliaceum L.) -- 6.3.4 Foxtail Millet (Setaria italica (L.) P. Beauv) -- 6.3.5 Kodo Millet (Paspalum scrobiculatum L.) -- 6.3.6 Little Millet (Panicum sumatrense Roth. Ex Roemer and Schultes) -- 6.4 Conclusion and Future Perspectives -- References -- 7: Role of Proteomics in Understanding the Abiotic Stress Tolerance in Minor Millets -- 7.1 Introduction.; 7.2 Morpho-Physio and Biochemical Responses of Minor Millets to Abiotic Stresses -- 7.3 The Need for Proteomics Research to Understand the Abiotic Stress Tolerance -- 7.4 Potential and Advances of Proteomics to Improve the Abiotic Stress Tolerance -- 7.5 Proteomics of Minor Millets Grown under Abiotic Stress -- 7.6 Conclusion and Future Perspectives -- References -- 8: Plant Regeneration and Transgenic Approaches for the Development of Abiotic Stress-Tolerant Small Millets -- 8.1 Introduction -- 8.2 Factors That Hinder the Production of Small Millets -- 8.3 Mechanism of Abiotic Stress Tolerance in Small Millets -- 8.4 Plant Regeneration Methods in Small Millets -- 8.4.1 Finger Millet -- 8.4.2 Foxtail Millet -- 8.4.3 Proso Millet -- 8.4.4 Barnyard Millet -- 8.4.5 Kodo Millet -- 8.4.6 Tef Millet -- 8.4.7 Fonio Millet -- 8.5 Transformation Studies in Small Millets -- 8.5.1 Finger Millet -- 8.5.2 Foxtail Millet -- 8.5.3 Barnyard Millet -- 8.5.4 Kodo Millet -- 8.5.5 Tef Millet -- 8.5.6 Fonio Millet -- 8.6 Transgenic Approaches to Produce Abiotic Stress-Tolerant Small Millets -- 8.6.1 Finger Millet -- 8.6.2 Foxtail Millet -- 8.7 Functionally Characterized Abiotic Stress Resistance Genes in Small Millets -- 8.8 Conclusion and Future Perspective -- References -- 9: Mining Genes and Markers Across Minor Millets Using Comparative Genomics Approaches -- 9.1 Introduction -- 9.2 Genome Sequences of Small Millets -- 9.3 Comparative Genomics Approaches in Small Millets -- 9.3.1 Analysis of Microsatellite Markers of Millets with Closely Related Cereals Through Comparative Genomic Approaches -- 9.3.2 Identification of Candidate Genes Targeting QTLs Reported in Small ; Millets -- 9.3.3 Expression Analysis of Stress-Related Genes in Small Millets by Comparative Genomics -- 9.4 Mining of Genes from Genome Sequences of Millets -- 9.5 Steps -- 9.6 Conclusion -- References.; 10: Improving the Nutrient-Use Efficiency in Millets by Genomics Approaches -- 10.1 Introduction -- 10.2 Nutritional Importance of Millets -- 10.3 Influence of Nutrients on Millet Growth and Production -- 10.4 Characterization of Millet Germplasm for Nutrient-Use Efficiency -- 10.5 Genomic Approaches for Improving Nutrient-Use Efficiency in Millets -- 10.5.1 Molecular Marker-Assisted Breeding Approaches -- 10.5.2 Functional Genomic Approaches -- 10.5.3 Genomics-Assisted Breeding Approaches -- 10.6 Conclusion and Future Prospectus -- References -- 11: Current Status of Bioinformatics Resources of Small Millets -- 11.1 Introduction -- 11.2 Genome Sequences Available in Minor Millets -- 11.3 Online Genomic Resources and Databases Available for Small Millets -- 11.3.1 Gramene Portal -- 11.3.1.1 Gene and Genome Browsers -- 11.3.1.2 Pathway Browser -- 11.3.1.3 Plant Gene Expression Atlas -- 11.3.1.4 Analysis and Visualization Tools -- 11.3.2 Millet Genome Database -- 11.3.3 Setaria italica Genome Database (SiGDB) -- 11.3.4 Foxtail Millet Marker Database (FmMDb) -- 11.3.5 Foxtail Millet MicroRNA Database (FmMiRNADb) -- 11.3.6 Foxtail Millet Transcription Factor Database (FmTFDb) -- 11.3.7 Foxtail Millet Transposable Elements-Based Marker Database (FmTEMDb) -- 11.3.8 Phytozome Database -- 11.3.8.1 Text and Sequence Search -- 11.3.8.2 Gene Family and Gene Page Views -- 11.3.8.3 Data Access -- 11.3.9 Plant Metabolic Network Database -- 11.3.9.1 Blast Tool -- 11.3.9.2 Metabolic Cluster View -- 11.4 Conclusion and Prospects -- References -- 12: Advances in Omics for Enhancing Abiotic Stress Tolerance in Finger Millets -- 12.1 Introduction -- 12.2 Development and Utilization of DNA Markers in Finger Millet -- 12.2.1 Random Amplified Polymorphic DNA (RAPD) -- 12.2.2 Inter Simple Sequence Repeat (ISSR) -- 12.2.3 Simple Sequence Repeats (SSRs).; 12.2.4 Expressed Sequence Tags (EST) SSRs (EST-SSRs) -- 12.2.5 Next Generation Sequencing (NGS) Derived Markers in Finger Millet -- 12.3 Different Omics Approaches in the Technological Era -- 12.3.1 Transcriptomics -- 12.3.2 Proteomics -- 12.3.3 Ionomics -- 12.3.4 Metabolomics -- 12.4 Reverse Genomics -- 12.4.1 Overexpressions (Transgenomics) -- 12.4.2 Gene Silencing -- 12.5 Conclusion and Future Prospects -- References -- 13: Genome-Editing Approaches for Abiotic Stress Tolerance in Small Millets -- 13.1 Introduction -- 13.2 Adaptation of Small Millets for Tolerance to Abiotic Stress -- 13.3 Progress Made in Genome Editing of Millets for Abiotic Stress Tolerance -- 13.3.1 CRISPR/Cas9 Targeting of Abiotic Stress Tolerance Genes -- 13.3.2 RNA Interference -- 13.4 Role of Biosafety and Regulation in Plant Genome Editing -- 13.5 Conclusion -- References -- 14: Integrating Genomics and Phenomics Tools to Dissect Climate Resilience Traits in Small Millets -- 14.1 Introduction -- 14.2 Productivity and Major Producers of Small Millets -- 14.3 Nutritional Significance of Small Millets -- 14.4 Abiotic Stress Tolerance in Small Millets -- 14.4.1 Drought Stress -- 14.4.2 Heat Stress -- 14.4.3 Salinity Stress -- 14.4.4 Flooding Stress -- 14.4.5 Chilling/Freezing Stress -- 14.4.6 Mineral-Deficient Soils -- 14.4.7 Metal Toxicity -- 14.5 Conventional and Molecular Breeding Approaches for Enhancing Stress Tolerance -- 14.6 Genomics-Assisted Breeding in Small Millets -- 14.7 Phenomics and Its Implication in Crop Improvement -- 14.8 Integrating Genomics and Phenomics in Small Millets for Climate Resilience -- 14.9 Conclusions and Future Perspectives -- References -- 15: Abiotic Stress Tolerant Small Millet Plant Growth Regulation by ; Long Non-coding RNAs: An Omics Perspective -- 15.1 Introduction.; 15.2 Millet as a Climate-Smart Model Candidate for Future Agricultural Sustainability: An Overview.